Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0020350 | OGI:01011440 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:27874715-27876586 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgcttcagcaagattcccaaatcaatacaatcacagcaattgaacaagtagagcaacatgttgggcaagcagaaacaacaagtgagacaaaagctacctcagcagaggacaatgacactatcaatgaagaagacattaacaactacttggctaatgatagccaagcactcctgtagtaattgacaagaaacacataccttgcattggcaagaaattcagaactcatgaagaagcgcgtagtttcttcaacttctatgcatatcaagtgggattttctgtagtcatcacacaccactacaaatctacaagcAaaaaaagatttggtcagatcaccaagtacacataccagtgctacaggtatggtaagatgatgatggtcagaagaagaaaaaaaagaaaactcagcagcaaggaatacacaggtgattgacagaactgattgcaaatgcatgctaacagtgaggcttgatggtgatgtttggagaatactaagcatgaatctcaaccataaccatacactcacacccaatagagaagcaaagttcctcagatcacacaaacatatgacggatgaagagaaaaagttgataaggactttgaaacaatgcaacatacccacgagaaatatgatttcaatattgtcatttctcagaggaggcatagcagcactgccatataccggaaaagacgtcagcaatgttggaacagcaattaactcagagacaagaaatactgacatgaatcaagtgatggaatatctaaggcaaaaagaagcaaaagatcctggctactattacaagctgactctagatgagaataacaaagttaagagcatgttctggactgatgggaggtcaacacaactctatgagcaatatggtgaatttgtgagtttcgacacaacttacaaaactaacagatataatatgccatttgctccaatagttggtgttacaggccatggaaacatatgcatttttgcatgtgcatttttaggagatgaaactacagaaactttcaaatgggtttttgaaacgttcctaacagccatgggaggaaaacatccagaaacaattataacagatcaagacttggcaatgagggcagctatacgtcaagtatttccaaacagcaaacatagaaattgtttgttccacattttgaagaaatgtagagaaaggtcaggaaatacattttcagacaagagaaggaaagatctctatgcagaatttaatgacattgtgcacaatagcttgacaagagctgaatttgaaagcctatggttgcaaatgattgcacagtacaacttgaaaaatatcaaatatctggaaataatgtggagaacaaggaagaattttataccGgtgtattccaaaacagatttttgcccatttatacatagcacagcacttagtgagggcacaaatgcaaggtttaaaaggggagttggcccaacacatagtgtcatgacttttctactggaatatgaaacaatcaatgacatcatcttcgacactgagtatgggaaagattatgaatccagaaacaagaagccaaagtctttttggtcaaattacatgatagaagaacaagcagcagacctatacaaccatgggatatttgataagtttcaagatgaattgaagggaacactaaatctagaagtggcagctatacaacaaggaaaagcatatgaagtatatgcagcgccaaatctgaaacaacaagaattcagaccaagaatatgttgtgatgacagacttaccacaagaaaacttcgtgtgcatatgtgcaaagttctccaaagatggaatcctatgcagccatgttttgaaagtgatgttgtatctgaaaatgagcaagattcctga
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| CDS seq | atgcttcagcaagattcccaaatcaatacaatcacagcaattgaacaagtagagcaacatgttgggcaagcagaaacaacaagtgagacaaaagctacctcagcagaggacaatgacactatcaatgaagaagacattaacaactacttggctaatgatagccaagcactcctaactcatgaagaagcgcgtagtttcttcaacttctatgcatatcaagtgggattttctgtagtcatcacacaccactacaaatctacaagcAaaaaaagatttggtcagatcaccaagtacacataccagtgctacaggtatggtaagatgatgatggtcagaagaagaaaaaaaagaaaactcagcagcaaggaatacacagtgaggcttgatggtgatgtttggagaatactaagcatgaatctcaaccataaccatacactcacacccaatagagaagcaaagttcctcagatcacacaaacatatgacggatgaagagaaaaagttgataaggactttgaaacaatgcaacatacccacgagaaatatgatttcaatattgtcatttctcagaggaggcatagcagcactgccatataccggaaaagacgtcagcaattacaacttgaaaaatatcaaatatctggaaataatgtggagaacaaggaagaattttataccGgtgtattccaaaacagatttttgcccatttatacatagcacagcacttagtgagggcacaaatgcaaggtttaaaaggggagttggcccaacacatagtgtcatgacttttctactggaatatgaaacaatcaatgacatcatcttcgacactgagtatgggaaagattatgaatccagaaacaagaagccaaagtctttttggtcaaattacatgatagaagaacaagcagcagacctatacaaccatgggatatttgataagtttcaagatgaattgaagggaacactaaatctagaagtggcagctatacaacaaggaaaagcatatgaagtatatgcagcgccaaatctgaaacaacaagaattcagaccaagaatatgttgtgatgacagacttaccacaagaaaacttcgtgtgcatatgtgcaaagttctccaaagatggaatcctatgcagccatgttttgaaagtgatgttgtatctgaaaatgagcaagattcctga
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| Protein seq | MLQQDSQINTITAIEQVEQHVGQAETTSETKATSAEDNDTINEEDINNYLANDSQALLTHEEARSFFNFYAYQVGFSVVITHHYKSTSKKRFGQITKYTYQCYRYGKMMMVRRRKKRKLSSKEYTVRLDGDVWRILSMNLNHNHTLTPNREAKFLRSHKHMTDEEKKLIRTLKQCNIPTRNMISILSFLRGGIAALPYTGKDVSNYNLKNIKYLEIMWRTRKNFIPVYSKTDFCPFIHSTALSEGTNARFKRGVGPTHSVMTFLLEYETINDIIFDTEYGKDYESRNKKPKSFWSNYMIEEQAADLYNHGIFDKFQDELKGTLNLEVAAIQQGKAYEVYAAPNLKQQEFRPRICCDDRLTTRKLRVHMCKVLQRWNPMQPCFESDVVSENEQDS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0020350 | OsLima_04g0020350.01 | Chr04 | 27874715 | 27876586 | + | NAM | ||
| CDS seq | atgcttcagcaagattcccaaatcaatacaatcacagcaattgaacaagtagagcaacatgttgggcaagcagaaacaacaagtgagacaaaagctacctcagcagaggacaatgacactatcaatgaagaagacattaacaactacttggctaatgatagccaagcactcctaactcatgaagaagcgcgtagtttcttcaacttctatgcatatcaagtgggattttctgtagtcatcacacaccactacaaatctacaagcAaaaaaagatttggtcagatcaccaagtacacataccagtgctacaggtatggtaagatgatgatggtcagaagaagaaaaaaaagaaaactcagcagcaaggaatacacagtgaggcttgatggtgatgtttggagaatactaagcatgaatctcaaccataaccatacactcacacccaatagagaagcaaagttcctcagatcacacaaacatatgacggatgaagagaaaaagttgataaggactttgaaacaatgcaacatacccacgagaaatatgatttcaatattgtcatttctcagaggaggcatagcagcactgccatataccggaaaagacgtcagcaattacaacttgaaaaatatcaaatatctggaaataatgtggagaacaaggaagaattttataccGgtgtattccaaaacagatttttgcccatttatacatagcacagcacttagtgagggcacaaatgcaaggtttaaaaggggagttggcccaacacatagtgtcatgacttttctactggaatatgaaacaatcaatgacatcatcttcgacactgagtatgggaaagattatgaatccagaaacaagaagccaaagtctttttggtcaaattacatgatagaagaacaagcagcagacctatacaaccatgggatatttgataagtttcaagatgaattgaagggaacactaaatctagaagtggcagctatacaacaaggaaaagcatatgaagtatatgcagcgccaaatctgaaacaacaagaattcagaccaagaatatgttgtgatgacagacttaccacaagaaaacttcgtgtgcatatgtgcaaagttctccaaagatggaatcctatgcagccatgttttgaaagtgatgttgtatctgaaaatgagcaagattcctga
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| Protein seq | MLQQDSQINTITAIEQVEQHVGQAETTSETKATSAEDNDTINEEDINNYLANDSQALLTHEEARSFFNFYAYQVGFSVVITHHYKSTSKKRFGQITKYTYQCYRYGKMMMVRRRKKRKLSSKEYTVRLDGDVWRILSMNLNHNHTLTPNREAKFLRSHKHMTDEEKKLIRTLKQCNIPTRNMISILSFLRGGIAALPYTGKDVSNYNLKNIKYLEIMWRTRKNFIPVYSKTDFCPFIHSTALSEGTNARFKRGVGPTHSVMTFLLEYETINDIIFDTEYGKDYESRNKKPKSFWSNYMIEEQAADLYNHGIFDKFQDELKGTLNLEVAAIQQGKAYEVYAAPNLKQQEFRPRICCDDRLTTRKLRVHMCKVLQRWNPMQPCFESDVVSENEQDS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0476500 | SBH | 2.892113 | 1.787543 | 5.617553 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g44630 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0476500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0020640 | SBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0021400 | SBH | 0.000000 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0021130 | SBH | 0.000000 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0020860 | SBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0021050 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0414500 | SBH | 0 | 0 | 0.0179385 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0019840 | SBH | 0.000000 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0467800 | SBH | 0.021931 | 0.0095625 | 0.0182745 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0020190 | SBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0020310 | SBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0020690 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0020870 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G020120 | SBH | 0.000000 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0020080 | SBH | 0.0 | 0.0 | 0.0 |
