Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0019880 | OGI:04078570 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:27555789-27557464 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gctgttcgagagattcatcagagaatcggaagcagttcaatcccgaagcaatttcacttttcctaaatcctaatcccttcgcttgtcgccgatgagcgcggcgacggaggaggggcggccggacggcgaggaggattcgccgcgcgcggaggcgttcctggagatcctcggccgggtccagccgggggatgcggaagcggagctctcctcctgcggcatcggcccgacggcggaggtcgcggagcaggtgctcaggtcccgcgtctgctactcccgccccaaatccgccgtccgcttcttcgtctggtcgggccggtcggtgaagcacaccggctacgcctggaacctcctcgtcgacatcctcggcaaggccgacatggaggagcccatgtgggacgccgtccgcaccatgaacaaggagggcggcggcctcgtcaccgtcgccaccttcgcctccatcttctcctcctactgcgccagcggcaacctcaggaaggccgtcgaggccttcgacgtcatggggaagtacggcgtggagccggacgccgtcgccctcaactccctcctctccgccatgtgccgcggggagggccgcgcgcaggcggcgcaggacctgttcgagcgcaccaaggccaccgtcgcgcccgacgcggacaccttcgggattctcctcgaggcgtgggagaaagaggggaacgcccagcgcgccaagagcaccttcggcgagatgattgtccgcgtcggctgggacgccggcaacatgcccgcgtacgacgccttcctctccacgcttgtgcgcggggatcaattcggcgaggcgctcaagttccttcaggtgatgcggtccaagggctgcctcccggggctcaagttcttcgccagggcaatcgaccttgtcgtccgcaagcgcgactatgcgaactctttggccatttggcaaatgatgatctcggatgctggccttgtaccaaacctCcccatgtacaatgccatgatcgacctctgttgcaGTgttggtgataccgactacgccctccgcatgctcgacgaaatgcccttcaatggcgtctttgcagattttatcacgtacaatgccatacttgaagggctcatcaagcagcgcaaggctcgtgaggctgaggctttcctcgcagagatgagcaagaacgagcagctgccctccccaaccaattgtgctgctgctatcagcatgttctctaaggagtttaacccgtcagcagcaatcgatgtgtggcactgcattgtggagcaccagattactccggctgatgagtcagccagagaactaatagttgggttgcttgattttggcaggtttgctgaggtgaagaaatatactgatgaaatgcttgacatgggaattgagttacctcagtcaaccattgataatatgaagcgcacatttgataaggttggcaagcaccacacatatgaccatattgctagaaggccaaagcggtgttagctatacatcaccaatttaatcataataggtatgccttctttcatatgggtgtttttggctgtgtcagtgaatgccatgaattgcatgaattcatctatcatcttgaccttatgccattcactaataagtcctcatgacttgctagtaagctacttggagtgaatgtcatcagttgcgtgaattcaccaat
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| CDS seq | atgagcgcggcgacggaggaggggcggccggacggcgaggaggattcgccgcgcgcggaggcgttcctggagatcctcggccgggtccagccgggggatgcggaagcggagctctcctcctgcggcatcggcccgacggcggaggtcgcggagcaggtgctcaggtcccgcgtctgctactcccgccccaaatccgccgtccgcttcttcgtctggtcgggccggtcggtgaagcacaccggctacgcctggaacctcctcgtcgacatcctcggcaaggccgacatggaggagcccatgtgggacgccgtccgcaccatgaacaaggagggcggcggcctcgtcaccgtcgccaccttcgcctccatcttctcctcctactgcgccagcggcaacctcaggaaggccgtcgaggccttcgacgtcatggggaagtacggcgtggagccggacgccgtcgccctcaactccctcctctccgccatgtgccgcggggagggccgcgcgcaggcggcgcaggacctgttcgagcgcaccaaggccaccgtcgcgcccgacgcggacaccttcgggattctcctcgaggcgtgggagaaagaggggaacgcccagcgcgccaagagcaccttcggcgagatgattgtccgcgtcggctgggacgccggcaacatgcccgcgtacgacgccttcctctccacgcttgtgcgcggggatcaattcggcgaggcgctcaagttccttcaggtgatgcggtccaagggctgcctcccggggctcaagttcttcgccagggcaatcgaccttgtcgtccgcaagcgcgactatgcgaactctttggccatttggcaaatgatgatctcggatgctggccttgtaccaaacctCcccatgtacaatgccatgatcgacctctgttgcaGTgttggtgataccgactacgccctccgcatgctcgacgaaatgcccttcaatggcgtctttgcagattttatcacgtacaatgccatacttgaagggctcatcaagcagcgcaaggctcgtgaggctgaggctttcctcgcagagatgagcaagaacgagcagctgccctccccaaccaattgtgctgctgctatcagcatgttctctaaggagtttaacccgtcagcagcaatcgatgtgtggcactgcattgtggagcaccagattactccggctgatgagtcagccagagaactaatagttgggttgcttgattttggcaggtttgctgaggtgaagaaatatactgatgaaatgcttgacatgggaattgagttacctcagtcaaccattgataatatgaagcgcacatttgataaggttggcaagcaccacacatatgaccatattgctagaaggccaaagcggtgttag
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| Protein seq | MSAATEEGRPDGEEDSPRAEAFLEILGRVQPGDAEAELSSCGIGPTAEVAEQVLRSRVCYSRPKSAVRFFVWSGRSVKHTGYAWNLLVDILGKADMEEPMWDAVRTMNKEGGGLVTVATFASIFSSYCASGNLRKAVEAFDVMGKYGVEPDAVALNSLLSAMCRGEGRAQAAQDLFERTKATVAPDADTFGILLEAWEKEGNAQRAKSTFGEMIVRVGWDAGNMPAYDAFLSTLVRGDQFGEALKFLQVMRSKGCLPGLKFFARAIDLVVRKRDYANSLAIWQMMISDAGLVPNLPMYNAMIDLCCSVGDTDYALRMLDEMPFNGVFADFITYNAILEGLIKQRKAREAEAFLAEMSKNEQLPSPTNCAAAISMFSKEFNPSAAIDVWHCIVEHQITPADESARELIVGLLDFGRFAEVKKYTDEMLDMGIELPQSTIDNMKRTFDKVGKHHTYDHIARRPKRC |
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| Function | Pentatricopeptide repeat-containing protein At3g62470, mitochondrial [UniProtKB/Swiss-Prot:Q9LZP3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0019880 | OsLima_04g0019880.01 | Chr04 | 27555789 | 27557464 | + | NAM | ||
| CDS seq | atgagcgcggcgacggaggaggggcggccggacggcgaggaggattcgccgcgcgcggaggcgttcctggagatcctcggccgggtccagccgggggatgcggaagcggagctctcctcctgcggcatcggcccgacggcggaggtcgcggagcaggtgctcaggtcccgcgtctgctactcccgccccaaatccgccgtccgcttcttcgtctggtcgggccggtcggtgaagcacaccggctacgcctggaacctcctcgtcgacatcctcggcaaggccgacatggaggagcccatgtgggacgccgtccgcaccatgaacaaggagggcggcggcctcgtcaccgtcgccaccttcgcctccatcttctcctcctactgcgccagcggcaacctcaggaaggccgtcgaggccttcgacgtcatggggaagtacggcgtggagccggacgccgtcgccctcaactccctcctctccgccatgtgccgcggggagggccgcgcgcaggcggcgcaggacctgttcgagcgcaccaaggccaccgtcgcgcccgacgcggacaccttcgggattctcctcgaggcgtgggagaaagaggggaacgcccagcgcgccaagagcaccttcggcgagatgattgtccgcgtcggctgggacgccggcaacatgcccgcgtacgacgccttcctctccacgcttgtgcgcggggatcaattcggcgaggcgctcaagttccttcaggtgatgcggtccaagggctgcctcccggggctcaagttcttcgccagggcaatcgaccttgtcgtccgcaagcgcgactatgcgaactctttggccatttggcaaatgatgatctcggatgctggccttgtaccaaacctCcccatgtacaatgccatgatcgacctctgttgcaGTgttggtgataccgactacgccctccgcatgctcgacgaaatgcccttcaatggcgtctttgcagattttatcacgtacaatgccatacttgaagggctcatcaagcagcgcaaggctcgtgaggctgaggctttcctcgcagagatgagcaagaacgagcagctgccctccccaaccaattgtgctgctgctatcagcatgttctctaaggagtttaacccgtcagcagcaatcgatgtgtggcactgcattgtggagcaccagattactccggctgatgagtcagccagagaactaatagttgggttgcttgattttggcaggtttgctgaggtgaagaaatatactgatgaaatgcttgacatgggaattgagttacctcagtcaaccattgataatatgaagcgcacatttgataaggttggcaagcaccacacatatgaccatattgctagaaggccaaagcggtgttag
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| Protein seq | MSAATEEGRPDGEEDSPRAEAFLEILGRVQPGDAEAELSSCGIGPTAEVAEQVLRSRVCYSRPKSAVRFFVWSGRSVKHTGYAWNLLVDILGKADMEEPMWDAVRTMNKEGGGLVTVATFASIFSSYCASGNLRKAVEAFDVMGKYGVEPDAVALNSLLSAMCRGEGRAQAAQDLFERTKATVAPDADTFGILLEAWEKEGNAQRAKSTFGEMIVRVGWDAGNMPAYDAFLSTLVRGDQFGEALKFLQVMRSKGCLPGLKFFARAIDLVVRKRDYANSLAIWQMMISDAGLVPNLPMYNAMIDLCCSVGDTDYALRMLDEMPFNGVFADFITYNAILEGLIKQRKAREAEAFLAEMSKNEQLPSPTNCAAAISMFSKEFNPSAAIDVWHCIVEHQITPADESARELIVGLLDFGRFAEVKKYTDEMLDMGIELPQSTIDNMKRTFDKVGKHHTYDHIARRPKRC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.147985 | 0.144759 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0520900 | RBH | 1.482193 | 2.395319 | 1.326239 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g44030 | RBH | 0.618052 | 1.134843 | 0.148464 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0520900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0020170 | RBH | 0.140750 | 7.823378 | 1.135217 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0020950 | RBH | 0.263453 | 1.276927 | 1.140262 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0020670 | RBH | 0.687407 | 0.000000 | 4.341585 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0020400 | RBH | 0.0 | 0.087637 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0020590 | RBH | 2.492211 | 4.113815 | 13.353318 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0408100 | RBH | 3.5364485 | 9.1230705 | 7.892841 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0019390 | RBH | 0.000000 | 0.472557 | 0.593333 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0408800 | RBH | 3.6970545 | 9.249969 | 7.928133 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0014300 | RBH | 0.082957 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0019740 | RBH | 0.433522 | 4.494384 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0019850 | RBH | 4.216703 | 3.767452 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0020220 | RBH | 0.593233 | 1.139509 | 0.161007 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0020390 | RBH | 0.111266 | 4.860102 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G019660 | RBH | 0.325244 | 1.057856 | 0.471113 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0019610 | RBH | 0.431929 | 4.898458 | 2.752035 |
