Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0019660 | OGI:04026840 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:27308236-27309643 | ||||||||
| Gene Symbol | OsMYB4, Osmyb4, OsMyb4, MYB4, OsMYB55, MYB55, OsMyb8, MYB8, OsMYB13b, MYB13b | ||||||||||
| DNA seq | ctagatctgcggcaagtcttgcgcttcgccggactccatgaacactccgagccagtagtccatgtcgtcggcggatggcggcgcgacgaacgcgtcgccgggctccatggacacgtcgtacccgtccagcggcatcgacagcgtctccgaccagaagctgtcgtcgatctggaactcctcggaagccgaggtgaaggagctctcctccttggcgcacacggacgcggacgccgagctgatcccggcgttgccgtgctcctccgccaccgacgaggccatcgaggactccgtcaccgacgacgaggcggaccgctcgggcgacgccggcggcgcggcggcggcggcggctggcttcttcgcgctcttcggcttcttgtgcttcttgccgccgctcgccgcgacatgaccgccctgagccggcgcatcgaggcgcttcttgaggtgggtgtgccacacgttcttgatctcgttgtccgtcctcccgggcaacctggcggcaattgcggaccacctgcgtagcacagaattcagagcggatcagtgcccaagttcatgtttcattttgtcaaaaaaaaaaaattgtttggctatttcagatgacttcattttgatttagagctttgctatcatcgcgtgatttgattccctcgtcgggatcacatgcggttgtttaatgcaaagcgcatgtttttgcagcgctgaattcaaggggggtcaccggaagagccaaacaagatggaatcttttagcacatctcgcgcatcatcagtgatgtaattagctacagaaaagtggcctacgactagcaatatattttctctctatttgcatcgagagcaggtggcccaggaggataacatatcagtatatgcccctccacaatggtaataaataactaataataactaaataaataaaaaaggaataaacctccctctcatagcatttgaagcacataagcaagcagcaatcattgctccaaaccaggagcagcgaaatttggggggatcagatcagataagtctgcaattaaggaggagcagagcagcgtgtgtacctgttgccaagcagctcgtggagatggatgatggtgtcctcctcctccttggagaagttgccccgcttgatgtccggccgcaggtagttgatccaccggagccggcagctcttgccgcaacgcagcagccctgcgacatcaaaacccattttagctttgcttcaccggcgccgccaaaggtacacgacctgaaccgaacacgagccgctgtcactcaccggcttgcttgggcagggcgcgccagttgccgtggccgtggcgctggatgtgggcgacgaggaccttgtcctcctccggcgtccatggacccttcttgagccccatcttctcgcagcacggagccctccccat
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| CDS seq | atggggagggctccgtgctgcgagaagatggggctcaagaagggtccatggacgccggaggaggacaaggtcctcgtcgcccacatccagcgccacggccacggcaactggcgcgccctgcccaagcaagccggtgagtggtccgcaattgccgccaggttgcccgggaggacggacaacgagatcaagaacgtgtggcacacccacctcaagaagcgcctcgatgcgccggctcagggcggtcatgtcgcggcgagcggcggcaagaagcacaagaagccgaagagcgcgaagaagccagccgccgccgccgccgcgccgccggcgtcgcccgagcggtccgcctcgtcgtcggtgacggagtcctcgatggcctcgtcggtggcggaggagcacggcaacgccgggatcagctcggcgtccgcgtccgtgtgcgccaaggaggagagctccttcacctcggcttccgaggagttccagatcgacgacagcttctggtcggagacgctgtcgatgccgctggacgggtacgacgtgtccatggagcccggcgacgcgttcgtcgcgccgccatccgccgacgacatggactactggctcggagtgttcatggagtccggcgaagcgcaagacttgccgcagatctag
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| Protein seq | MGRAPCCEKMGLKKGPWTPEEDKVLVAHIQRHGHGNWRALPKQAGEWSAIAARLPGRTDNEIKNVWHTHLKKRLDAPAQGGHVAASGGKKHKKPKSAKKPAAAAAAPPASPERSASSSVTESSMASSVAEEHGNAGISSASASVCAKEESSFTSASEEFQIDDSFWSETLSMPLDGYDVSMEPGDAFVAPPSADDMDYWLGVFMESGEAQDLPQI |
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| Function | Transcription factor MYB4 [UniProtKB/Swiss-Prot:Q7XBH4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0019660 | OsLima_04g0019660.01 | Chr04 | 27308236 | 27309643 | - | NAM | ||
| CDS seq | atggggagggctccgtgctgcgagaagatggggctcaagaagggtccatggacgccggaggaggacaaggtcctcgtcgcccacatccagcgccacggccacggcaactggcgcgccctgcccaagcaagccggtgagtggtccgcaattgccgccaggttgcccgggaggacggacaacgagatcaagaacgtgtggcacacccacctcaagaagcgcctcgatgcgccggctcagggcggtcatgtcgcggcgagcggcggcaagaagcacaagaagccgaagagcgcgaagaagccagccgccgccgccgccgcgccgccggcgtcgcccgagcggtccgcctcgtcgtcggtgacggagtcctcgatggcctcgtcggtggcggaggagcacggcaacgccgggatcagctcggcgtccgcgtccgtgtgcgccaaggaggagagctccttcacctcggcttccgaggagttccagatcgacgacagcttctggtcggagacgctgtcgatgccgctggacgggtacgacgtgtccatggagcccggcgacgcgttcgtcgcgccgccatccgccgacgacatggactactggctcggagtgttcatggagtccggcgaagcgcaagacttgccgcagatctag
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| Protein seq | MGRAPCCEKMGLKKGPWTPEEDKVLVAHIQRHGHGNWRALPKQAGEWSAIAARLPGRTDNEIKNVWHTHLKKRLDAPAQGGHVAASGGKKHKKPKSAKKPAAAAAAPPASPERSASSSVTESSMASSVAEEHGNAGISSASASVCAKEESSFTSASEEFQIDDSFWSETLSMPLDGYDVSMEPGDAFVAPPSADDMDYWLGVFMESGEAQDLPQI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.999370 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0517100 | RBH | 1.783421 | 1.523612 | 3.962170 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g43680 | RBH | 1.034805 | 0.938188 | 0.954964 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0517100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0025030 | SBH | 0.0 | 5.854043 | 4.541621 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0025780 | SBH | 0.0 | 0.000000 | 0.701850 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0020450 | RBH | 0.639512 | 20.840832 | 1.347608 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0025240 | SBH | 0.0 | 0.124003 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0020380 | RBH | 0.0 | 34.538200 | 3.953696 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0404400 | RBH | 4.9506665 | 330.982071 | 16.0935345 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0024260 | SBH | 0.0 | 0.534992 | 0.355168 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0405400 | RBH | 4.7625685 | 192.0972675 | 2.0020415 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0025420 | RBH | 0.0 | 0.173337 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0019510 | RBH | 0.0 | 20.796198 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0019630 | RBH | 0.0 | 69.949875 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0020000 | RBH | 0.0 | 3.479289 | 0.594451 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0016230 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G015430 | SBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0019410 | RBH | 0.0 | 28.207296 | 1.997644 |
