Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0019400 | OGI:04077350 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:27062732-27070117 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctgaaaataccgtacattaatgcaataggcatcatatcttacaccaatatggtttgtgaattgggcgaggagtaacgtttatAtttttttcagccatcatgttatgattcattgaacgaacttatagctagtattacacagatttaggggaaccacaaaggttgtaccgctgaaggacattaagctaacggccagtagagttcttagctcttcttctggggctatctgcactctcaagcatgaattgctaacctcgattcttggccatgaacgtagtttgactttttgcatctgaaaatcaatgatacatgatttggtagtatttatacctctcatccatagctgcatgtagataactgagtactgtctattgttattgacttgagtatatgatttttctatctgtttttccttccttttagggctcgaaaatacaaactctggttgacgaggcagtaaggatatccagcgttctttaacactgcactcaacattgcattgttgcagtagcatttaaaggtccgttccagaattcagagagcaaggttttgtcagaggtttgaatccatgcttaatagctgccgaccaagtcttctcaatggtcatcatatcatctccacattcatgcatttcccaaccttctaaagcatgcaatattccagcaatgcgccatgcactcatcacccttcttggcagccaattctgttcatacagccagtagtatactcatgtcaatgttggtaaatttaggcatggagaaatagttggtatataacatatgggcccattttgtttagctcaaaatacctcacaggtgtggacattctgcattgtctctgggatcttcattgctgggttactcaagtaagtgcagtccttgcgtgccttcttaagggggaactgtgacgtgggaataaatatagttccctttggtgCcctcccttgtgcatcgtctatgctatctcctatccaaatctgttgcaatgggagtataatcatgaatataataagcttgcatgagtttttttttcttggttatctcttttatgaacctctgtccacaaggtatcctagctgtttttttttgagatattaaggatgaaaggaagagatgcatgtaccccctcattaatgatgacggatgttaggggagtgggagggtggtttgggggtaaaattgggtgaaaattaaatgactggtagttgggtgggagaagtagtactctaaggaccccttaggtcaatcctaacccaagacactagacatagtttccataaactccgcctcatcaagaactagtactagacactactatttcaatacaaacaccaatattccatacttaaatttaatgctacttatctcacatgatgtcttgggtgttgtgtagaaactatgtttcatgcaagacataattttcttctctttcctcatttattcacttgacacatcatttttcatcataggtgctagcttatttaatgctatggacatcatcctagtcattgggttgggaatggtcttaaagttgtggacaaaTtttgaaggagcattaaagtattactaatatacatcacccactaatttactcgtcatttgatgcaatcccaatagtggttatataatatagtgtcacacatatgggaactcgtgtgatagcatgatgcatgaataacttgtttgaattcttttaacaaggtttatagttgagatttttactagcctaccaagctccagtagtgtctatggtaccacagtactatttattcaccaatttatgcttcttgaggaaaactccctccttattttacctgtggtgtttcatcattagagaatttcagatagatagctctactctctggaactcgagacttgagcattccatattctttctcttgattcaggattacctgcacaaaaatatgtggaatagtctggattatagcaagatttataacccaagttttaatacattaagataatttaatataaaaaataatctactaaatgattataaaaatgtatcgaacataacaaagtgggaggctgctagatttacctggacacctctctgacataaagctatggctgttgcacgggtcaccttagaattacttccacagagaaaaacttgctttgtaccaaaaggtatgctattgagcaccacggcagttgctaagccgcttccatcaataagtcgtacccttaatcttggatattttttggcaaacaattcaccgcttccattgagttgttCTGCctgcaacgatgaaatgaggtctaaaatcatggccatctgattaaatggtacacttctgaagtttggatgaaacaaatcaatgttttttgtacaatttttttcaaagaaatttgtatgtgtttatgcatgacctgacatttcacaatgattctggtaaaaaactgactaattctacgaagttgttagaagtagacaaaatgttattcttgcatgcattttgctaatgtacttgaatccatatttatacagaaaggttgtaatagtataaaagaaaattatgcaatacaataattatcatcatgcctgatttagaagtcctagactgagcactttgacccctttttcattagcatctaatattgccttctcgatcaagttgttgatggacttactttcccaagacaagccatactgcatggaaagaacttgttagcagttttcaaactgttaactgttaaggcatagcaatcttagagcaggtacaatagcagactattagccggctgtaaatatattttaatgaaataaaagatgagagagaagagcgggctacagatctgtagccagctgcagcatggactccaagacgcaatgtgtgtatgacaggtgggaccatatattaatagtatagtaagcaactattgtatgaattggctattagattagctatagatgaattgaagctaatagtgggctatactattaaacttgctcttactgcggatgaatccattacttggaagttgtatcttggtagtgcccatacttgcatgctgaacttcttcagttttagtctctcgacaacaaatgctgaagatccataaatccatgccagtaccattgataaccacgcaacaggccatagcatccacatataccacactgagtcattgcatggtttagatgatatggaagtaatcccaatccttagatgatacgttgatttcaaggaagtcatatgtgtcaggtgaacaatatctggtgtttcctctgttcctttcaatgatctctcatacaactcatcacttgaactatccatggtgttgtaaatgtagtcatagaatggcatgaacaatgagtagtttgtacggaactgggtatgatggagagagtgaaacctgtgaaatggaacaaaaataagtagtttttttatatacttctatccataatccacttgtcagctttgactaagaatgcaacaaatcccaagtccattacctagtggactgctaatatgttggtcagattgtgaacttgatgttaaaattttatacttacgatggagtatatatgagatacttgagaggaggaaaagtttggaacatccactttggcatcagctcaaaattgcagtggcccatgttattcatgaaatcaatgtaagtaatgtacaagacaccagccaggacagaaccacagCccataaaaattggcggcaatatggagattgaaaatagcaggaaataggctaaatgttcagcaaacggatggatgacagctgccagtcatatattaaaattgcattagaatcaaaggaggctgtggaattactgcataaatgttgcacaacatgctatctgcaacacaataatacgcgttgccaacataatgaacatctagtgagttaatacgttagtccaagcgaagaaggcaaattcaaagtagatgagctggtgtaaggaccaatgacataacaccttagttgagaattgtgttatggctttgagagactacatatagctcaatactttctcttagattcatctaagcttgattttttaaaatttttaaacctttttaatttttaattttaaaaataaacccatccaaaacttattttcaagatatgaaccttttggccacgttggccaaactggcgtggcaaaacaatattgtcacgccgctcctgctggcgtgacaacgttatttggccacgccgctctcgctggagtgacaggacaaaactgtcacgcccgctacaggcggcgtggcagtgttgttttgccacgccaggcgggctggcaaggccatatggttcagattttgaaaataagttttgcatgagtttatttttaaaatttaaaatagaaaaggttcaaaaaattaaaaaaaaaaatctctaagcttttaactttttgtgctcacagcaacaaattattctcaggaattcagttgatgccatgtagtatagacaaaaaaaataccgatggtactttgatatcttccagtacgttagtaaatgagctatataaacaattatttattttgtatgtttttacactcttcaagccattgttggtaaaaaaaaaactgactgtgaagtaacataaatatgatgtgtgctagtagcataaattgtaggagcaatgacaaacatgtaacaaaaaaaagaatggtcttacatgtgtaacagtacatgcaccttacttactgttaactactaaaagcaattactgtgaattactggctcatgaatagtttttggtgatgaaagttgagtgatgcatttcatgtttctatgataagaactttgtgtgctcttagcatcatgatagcatgtggtgctactttggcggcagattgatgtgaatatcacatgagaagtgctttgttttttttaacatcttaccatcatctgcaattacacatttactgaagctgatcAaaatcacacagtgcaatattacagggtactcatgctttgatttatttatatagtaaatttaaggtacactttgtcttgttttgtccatctttggggactttgatgtgtttgttgatgctctcaaactggcacaatgtcacttatctagtgttcttggcagttgtcttaagatgcaacaggaaaaacaattgttacttctgcaaactagtggcgtggggcgaatcataaacctgtaaaaatgttctaaaaccttaccgcgctttttctgaaacaatcaataaacaagaagatcagttccatgttcgccatttcatgttgccattatttattcctatttaaagctcttggataataactatgttcttgaggcatcgttgtttgtgcatctagttgtagatttaggtggtgtttgggaaggagggactaaagtacaaaaattttaatccctataggagggacttatacttttgtgagagggactataaagtttagtcccttcttcccaaacaccaccttagagaataagttggatatatcattgtgttgattcttgttgtttttagtgtcgttacttacaggttatgggctcagtgacgatggatgcgtggtggtgcgagtggtaacgcgagtagagaaaatggtggtgcagtgccctgtgaaaccagtagtagaggaactcgacaggtcccatgtgaagcaagatagtgatgagggctccattggttctccacactggcattaggcgaaagttcgggatgattgcgtagcccaggtagaacagaagtccgttcaagatgatctgatcatccctgcacataatagcaaggatcaatcatcatttcaattaacacgagtagatttgcctgcagtggagatatttcccaccaacgcaaggattacttgggcatcgcatacctgcccgtgcccatgccaagtataatactcggtccacctgctcgaagtcgagactgcgatcaacaatgaggtgcttcctgcgagcagtctggtatcgagacaaactgatccagatctggttgtggatcatcctcagcagcagagttggcaacatgaaagtgtacgctgggtcaaagtctccccaccccttggtggccaacctgtgtgccgtgtgcatggccacaggagccaggaccaggtactgtgcatggacagaaagcattcggtcaagtactgggtggtgggaacaaattatgttggaatgacatcttgtcTttgaaaggtttttcagttgatcgtcatcaagtttatcaccgtggatttgcagtttacagtgtcagttcagttgaatcatgaaactgcttgaaatgtacagctactgccatatttagacggctggtacttatgtcatttggcgattgtgcaacttattgagccaaagaatctgagacgtcaacagaggagattgggcacatgttggacgatggtactgtcagtattgatcagatcatgcaagcaaagaaacctgccatatattttgggcgaatgattggcaccatggtttacttccatcgttttcttgaagcattttttttctgggtgtggagatggaatatattgttggactaacaagaaatcatatcatggctaagtgaggtaactacacaatttgaaaataatctgcgggccaaaaatgcacgaacacgagaaagacagcttctgatctatatctatgcaacgtatgcggttccaataacttgttaggatatgcttgagcatggtccaattgttgaccctatggaaatcaaatttgctgcaatccctaattgacaatgcatggagaccttccattgtttcagaaccccgtgtggctcaaattcatgttcaagccatcattctggtaatgattagtttttccttgataatatttcaactaatattgattaattctcttgatctccttcaactagacattattatgatcacgcattacttgaataccgcttgtaaataacccaagaaatatgaccggtataggaactactaagggtactaaagaaacaagaacgacgacgactaattcatCcatcaatatattcatgaaaaatcgaaaactaaacgatgatggtttgtgcaatcctctaatagcatgttaattggtaaatggattggagttggtttaatatatttctcgaacaagacatcctgtatggaaggagtaggacatgctggcaaattcttggcataccttgtagccccccatccattgccatggccattcggtcaaagggcctggtcgcgtcgccatggtgatgggcagtgtctttcctctctgacccaaaggtaagcaagcagctccctcacccgaccgtgctaactggtaagctcttcggtagcattttatttgcatggactgtttacattgcagaaaacacctcatgtacgcaaggggatttgtgaagcacccctagaatcttttgtcaggcacctcctagaaaaaattca
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| CDS seq | atgaggtgttttctgcaatgtaaacagtccatgcaaataaaatgctaccgaagagcttaccagttagcacggtcgggtgagggagctgcttgcttacctttgggtcagagaggaaagacactgcccatcaccatggcgacgcgaccaggccctttgaccgaatggccatggcaatggatggggggctacaagtacctggtcctggctcctgtggccatgcacacggcacacaggttggccaccaaggggtggggagactttgacccagcgtacactttcatgttgccaactctgctgctgaggatgatccacaaccagatctggatcagtttgtctcgataccagactgctcgcaggaagcacctcattgttgatcgcagtctcgacttcgagcaggtggaccgaatcatcttgaacggacttctgttctacctgggctacgcaatcatcccgaactttcgcctaatgccagtgtggagaaccaatggagccctcatcactatcttgcttcacatgggacctgtcgagttcctctactactggtttcacagggcactgcaccaccattttctctactcgcgttaccactcgcaccaccacgcatccatcgtcactgagcccataacctctgtcatccatccgtttgctgaacatttagcctatttcctgctattttcaatctccatattgccgccaatttttatggGctgtggttctgtcctggctggtgtcttgtacattacttacattgatttcatgaataacatgggccactgcaattttgagctgatgccaaagtggatgttccaaacttttcctcctctcaagtatctcatatatactccatcgtttcactctctccatcatacccagttccgtacaaactactcattgttcatgccattctatgactacatttacaacaccatggatagttcaagtgatgagttgtatgagagatcattgaaaggaacagaggaaacaccagatattgttcacctgacacatatgacttccttgaaatcaacgtatcatctaaggattgggattacttccatatcatctaaaccatgcaatgactcagtgtggtatatgtggatgctatggcctgttgcgtggttatcaatgGCAGaacaactcaatggaagcggtgaattgtttgccaaaaaatatccaagattaagggtacgacttattgatggaagcggcttagcaactgccgtggtgctcaatagcataccttttggtacaaagcaagtttttctctgtggaagtaattctaaggtgacccgtgcaacagccatagctttatgtcagagaggtgtccaggtaatcctgaatcaagagaaagaatatggaatgctcaagtctcgagttccagagagtagagctatctatctgaaattctctaatgatgaaacaccacagatttggataggagatagcatagacgatgcacaagggaggGcaccaaagggaactatatttattcccacgtcacagttcccccttaagaaggcacgcaaggactgcacttacttgagtaacccagcaatgaagatcccagagacaatgcagaatgtccacacctgtgagaattggctgccaagaagggtgatgagtgcatggcgcattgctggaatattgcatgctttagaaggttgggaaatgcatgaatgtggagatgatatgatgaccattgagaagacttggtcggcagctattaagcatggattcaaacctctgacaaaaccttgctctctgaattctggaacggacctttaa
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| Protein seq | MRCFLQCKQSMQIKCYRRAYQLARSGEGAACLPLGQRGKTLPITMATRPGPLTEWPWQWMGGYKYLVLAPVAMHTAHRLATKGWGDFDPAYTFMLPTLLLRMIHNQIWISLSRYQTARRKHLIVDRSLDFEQVDRIILNGLLFYLGYAIIPNFRLMPVWRTNGALITILLHMGPVEFLYYWFHRALHHHFLYSRYHSHHHASIVTEPITSVIHPFAEHLAYFLLFSISILPPIFMGCGSVLAGVLYITYIDFMNNMGHCNFELMPKWMFQTFPPLKYLIYTPSFHSLHHTQFRTNYSLFMPFYDYIYNTMDSSSDELYERSLKGTEETPDIVHLTHMTSLKSTYHLRIGITSISSKPCNDSVWYMWMLWPVAWLSMAEQLNGSGELFAKKYPRLRVRLIDGSGLATAVVLNSIPFGTKQVFLCGSNSKVTRATAIALCQRGVQVILNQEKEYGMLKSRVPESRAIYLKFSNDETPQIWIGDSIDDAQGRAPKGTIFIPTSQFPLKKARKDCTYLSNPAMKIPETMQNVHTCENWLPRRVMSAWRIAGILHALEGWEMHECGDDMMTIEKTWSAAIKHGFKPLTKPCSLNSGTDL |
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| Function | Very-long-chain aldehyde decarbonylase GL1-7 [UniProtKB/Swiss-Prot:Q7XPZ4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0019400 | OsLima_04g0019400.01 | Chr04 | 27062732 | 27070117 | - | NAM | ||
| CDS seq | atgaggtgttttctgcaatgtaaacagtccatgcaaataaaatgctaccgaagagcttaccagttagcacggtcgggtgagggagctgcttgcttacctttgggtcagagaggaaagacactgcccatcaccatggcgacgcgaccaggccctttgaccgaatggccatggcaatggatggggggctacaagtacctggtcctggctcctgtggccatgcacacggcacacaggttggccaccaaggggtggggagactttgacccagcgtacactttcatgttgccaactctgctgctgaggatgatccacaaccagatctggatcagtttgtctcgataccagactgctcgcaggaagcacctcattgttgatcgcagtctcgacttcgagcaggtggaccgaatcatcttgaacggacttctgttctacctgggctacgcaatcatcccgaactttcgcctaatgccagtgtggagaaccaatggagccctcatcactatcttgcttcacatgggacctgtcgagttcctctactactggtttcacagggcactgcaccaccattttctctactcgcgttaccactcgcaccaccacgcatccatcgtcactgagcccataacctctgtcatccatccgtttgctgaacatttagcctatttcctgctattttcaatctccatattgccgccaatttttatggGctgtggttctgtcctggctggtgtcttgtacattacttacattgatttcatgaataacatgggccactgcaattttgagctgatgccaaagtggatgttccaaacttttcctcctctcaagtatctcatatatactccatcgtttcactctctccatcatacccagttccgtacaaactactcattgttcatgccattctatgactacatttacaacaccatggatagttcaagtgatgagttgtatgagagatcattgaaaggaacagaggaaacaccagatattgttcacctgacacatatgacttccttgaaatcaacgtatcatctaaggattgggattacttccatatcatctaaaccatgcaatgactcagtgtggtatatgtggatgctatggcctgttgcgtggttatcaatgGCAGaacaactcaatggaagcggtgaattgtttgccaaaaaatatccaagattaagggtacgacttattgatggaagcggcttagcaactgccgtggtgctcaatagcataccttttggtacaaagcaagtttttctctgtggaagtaattctaaggtgacccgtgcaacagccatagctttatgtcagagaggtgtccaggtaatcctgaatcaagagaaagaatatggaatgctcaagtctcgagttccagagagtagagctatctatctgaaattctctaatgatgaaacaccacagatttggataggagatagcatagacgatgcacaagggaggGcaccaaagggaactatatttattcccacgtcacagttcccccttaagaaggcacgcaaggactgcacttacttgagtaacccagcaatgaagatcccagagacaatgcagaatgtccacacctgtgagaattggctgccaagaagggtgatgagtgcatggcgcattgctggaatattgcatgctttagaaggttgggaaatgcatgaatgtggagatgatatgatgaccattgagaagacttggtcggcagctattaagcatggattcaaacctctgacaaaaccttgctctctgaattctggaacggacctttaa
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| Protein seq | MRCFLQCKQSMQIKCYRRAYQLARSGEGAACLPLGQRGKTLPITMATRPGPLTEWPWQWMGGYKYLVLAPVAMHTAHRLATKGWGDFDPAYTFMLPTLLLRMIHNQIWISLSRYQTARRKHLIVDRSLDFEQVDRIILNGLLFYLGYAIIPNFRLMPVWRTNGALITILLHMGPVEFLYYWFHRALHHHFLYSRYHSHHHASIVTEPITSVIHPFAEHLAYFLLFSISILPPIFMGCGSVLAGVLYITYIDFMNNMGHCNFELMPKWMFQTFPPLKYLIYTPSFHSLHHTQFRTNYSLFMPFYDYIYNTMDSSSDELYERSLKGTEETPDIVHLTHMTSLKSTYHLRIGITSISSKPCNDSVWYMWMLWPVAWLSMAEQLNGSGELFAKKYPRLRVRLIDGSGLATAVVLNSIPFGTKQVFLCGSNSKVTRATAIALCQRGVQVILNQEKEYGMLKSRVPESRAIYLKFSNDETPQIWIGDSIDDAQGRAPKGTIFIPTSQFPLKKARKDCTYLSNPAMKIPETMQNVHTCENWLPRRVMSAWRIAGILHALEGWEMHECGDDMMTIEKTWSAAIKHGFKPLTKPCSLNSGTDL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0512200 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g43270 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0512200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0019690 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0020480 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0020190 | RBH | 0.0 | 0.0 | 0.423403 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0019910 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0020120 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0401400 | RBH | 0.0097655 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0018920 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0401800 | RBH | 0.008204 | 0 | 0.0130385 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0025240 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0019250 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0019370 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0019750 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0019910 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G019190 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0019140 | RBH | 0.0 | 0.0 | 0.000000 |
