Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0018730 | OGI:04076350 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:26600506-26603742 | ||||||||
| Gene Symbol | RLCK153, OsRLCK153, RLCK167, OsRLCK167 | ||||||||||
| DNA seq | ctatgctaatttaagacatctcatccaaatgaggcgcaccacacttctttgttggcaaactgaaatcagatagcattctggtagccactaaacctacagggatgtttcttgtgtgttttgaagccatgtgcccctgttttggttcaagaaggaaggatgggagcgaagaccctgttcttggaagggatGgaaattcctgtaagttaaatagcaagctttcatctattggtgatctaatctgttaacacaatgaaacaatgtagatgtcacgtttggaagtataaatgaccatcatgaattgtgacacattccttcatccttgtttttccagtgaattcttctgagctgaggtcaatgtctgatagagttcctccaagccctcttcgagtacctgcaagtccatctagattttcattgtcttcatCAccaagtagaaatgagccattgaaCctgagtcttgaacaagttattaaactgacacataactttgcaccagacctgatgattggtgaaggttattttggaaaggtctacagagcacagctgcgagatggccacattgtggcaattaaaagggcaaaaatggtaggttttatttttatttttttaataaaaagcagtgttggcgcaatgatagtggctgtcaacaagcagctatactagagatttctctatttagaatgactgaggtgttttttttcaagtagtctcgctggttgatccatttttgtgtagatcagtacggtaatgaaacagtaatgcactggtaaagcatgtactcacattgcattctttgcaccagtagttgtgtagttattataatttggtgtttttcaccgcttgatcttgttggtcactagtcaaatttcttttgcaatttatatttattcaaaaggtcctgataaagtattaaagttgctgatagaaactctgcttcctacatgtgatttttcttacaagtgaatcgcagttttcatccggtttctttatgcaggaacattttgcctctttacgggccgaattcagtaatgaaattgcattactaaaaaaaattgaacacaggaatttggtccaattacttggttatatcgacaaaagaaatgaacgaatcgtcataactgagtatgttccaaacggcactcttagggagcatctagatggtaaactgcatactaagattctcttttgttgaattccatatagaacaatcagtaattttcAaattatctttcaggtcaacgtgggcttgttttaagctttaatcagcggcttgaaatagccatagatgttgctcatgggttaacttatttgcatctatatgcaggtatgctttgtcacatgtttctgttgctgagcataaaaacagtttaaaaaaacaactgactgttatttttatttttatttttataccaagtcatgcatcggggtattgccactaagtaatgcaagaactgtaaaccagtattttaactatattttccccctctaaaggttggtccattggctcataatctgctaataaatgctagtatcagatatcctgactgtaatgttctgtagttcggaaattgtttgtggctgtacatcaataaaggttgtgaaatgagcctaacaaccaagttgaataaaccatgaaaattagccatgtaatcagatgtgtatctgattttaattctttgatcttcaagctttaaagtagcttacagagattctagtttgactattcctattggcaatttgcatatgtattttaTttatttgttctgtacttttatgcttttagagaagcccataatacacagggatgtgaagtcatcaaacattctactaaatgaaggcttcagggccaaagtggccgactttggatttgcaaggactggtcctacagagccagaccagtcacagattcagactgatgtgagaggaacagctggctatgtagatccagagtatctcaggacaaaccatctgacagtcaagagtgatgtattctcttatggagttttgctcctggaaattctttctggtcgtcgtcctattgaggtcaggagagctgcaagagaaaggatcaccgtgagatgggtatgtcttcacttccctactttgtgtttacattggtttagacttttgtttctttccattgttttttctagataactatttaggagcaatttacctttgttctggttattttcttgcccccctgacccctcttgcccctgcatacgctcttgcttttctttctcgagcagttatctgcacatgaattcattttctttgtcgacaatttgcaatcccatcacaagttaaaccatacaacatgtaaacttccagtgtgcatgcacaaacataacaaaaatataatattttcttaaacactcaacattttcatttacctgggaagaaaacaataataagcttgattcattttctatagcagttaagctgtttggtcatgggttttgtcagaatttaaggcatctgaggctctctattgttttctaattttgatacaggccttcgagaaatacaacagaggtgatgttaaggaaatattggatccaatgttgaccgagtcagtaaatgaggatatactgaataagattttcgatgtagcattccaatgtgttgctcctactcgtgctgacaggccaacaatgaaagaagttgcagagaggctgtggaagataagaagggattatgcaaaaacccaacgcagagcagaaatggctctgtaaaccatctgatcctagcttctgcttttactcgagagagcatttggtgaactcaccagtgtccagcaaagatccacaaaaacaagttcagttttgcgaatcgggacaactgaaatctatacatggttgcaggattattatatgcgctgtacatggacttgcatgtttaaaagatcaatatgatgtacaccgacatgtgaatcgaagttttccccatatagccTttttgctctatccaagctttcagtaatttgtgtctcaaggaagtgtgaatggtcttgttttgaagcctttcaacactcaacagttcttgatacagctttccgttcttgtgtatattttgctggtcctcctgtggtacagctgatctttttgtcatgttcagtgttgctcatgatgtgaggtgTttttaagtgtaattatggcttttgggatgctatgttgtattcgtgtgctgtaaccagatcttaaggcaatggatgtgcattaattgtgatttttt
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| CDS seq | atgtttcttgtgtgttttgaagccatgtgcccctgttttggttcaagaaggaaggatgggagcgaagaccctgttcttggaagggatGgaaattccttgaattcttctgagctgaggtcaatgtctgatagagttcctccaagccctcttcgagtacctgcaagtccatctagattttcattgtcttcatCAccaagtagaaatgagccattgaaCctgagtcttgaacaagttattaaactgacacataactttgcaccagacctgatgattggtgaaggttattttggaaaggtctacagagcacagctgcgagatggccacattgtggcaattaaaagggcaaaaatggaacattttgcctctttacgggccgaattcagtaatgaaattgcattactaaaaaaaattgaacacaggaatttggtccaattacttggttatatcgacaaaagaaatgaacgaatcgtcataactgagtatgttccaaacggcactcttagggagcatctagatggtcaacgtgggcttgttttaagctttaatcagcggcttgaaatagccatagatgttgctcatgggttaacttatttgcatctatatgcaggtatgctttgtcacatctttaaagtagcttacagagattctagtttgactattcctattggcaatttgcatatgtattttaTttatttgttctgtacttttatgcttttagagaagcccataatacacagggatgtgaagtcatcaaacattctactaaatgaaggcttcagggccaaagtggccgactttggatttgcaaggactggtcctacagagccagaccagtcacagattcagactgatgtgagaggaacagctggctatgtagatccagagtatctcaggacaaaccatctgacagtcaagagtgatgtattctcttatggagttttgctcctggaaattctttctggtcgtcgtcctattgaggtcaggagagctgcaagagaaaggatcaccgtgagatgggccttcgagaaatacaacagaggtgatgttaaggaaatattggatccaatgttgaccgagtcagtaaatgaggatatactgaataagattttcgatgtagcattccaatgtgttgctcctactcgtgctgacaggccaacaatgaaagaagttgcagagaggctgtggaagataagaagggattatgcaaaaacccaacgcagagcagaaatggctctgtaa
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| Protein seq | MFLVCFEAMCPCFGSRRKDGSEDPVLGRDGNSLNSSELRSMSDRVPPSPLRVPASPSRFSLSSSPSRNEPLNLSLEQVIKLTHNFAPDLMIGEGYFGKVYRAQLRDGHIVAIKRAKMEHFASLRAEFSNEIALLKKIEHRNLVQLLGYIDKRNERIVITEYVPNGTLREHLDGQRGLVLSFNQRLEIAIDVAHGLTYLHLYAGMLCHIFKVAYRDSSLTIPIGNLHMYFIYLFCTFMLLEKPIIHRDVKSSNILLNEGFRAKVADFGFARTGPTEPDQSQIQTDVRGTAGYVDPEYLRTNHLTVKSDVFSYGVLLLEILSGRRPIEVRRAARERITVRWAFEKYNRGDVKEILDPMLTESVNEDILNKIFDVAFQCVAPTRADRPTMKEVAERLWKIRRDYAKTQRRAEMAL |
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| Function | Calmodulin-binding receptor-like cytoplasmic kinase 3 [UniProtKB/Swiss-Prot:Q9ASQ5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0018730 | OsLima_04g0018730.02 | Chr04 | 26600506 | 26603742 | + | NAM | ||
| CDS seq | atgtttcttgtgtgttttgaagccatgtgcccctgttttggttcaagaaggaaggatgggagcgaagaccctgttcttggaagggatGgaaattccttgaattcttctgagctgaggtcaatgtctgatagagttcctccaagccctcttcgagtacctgcaagtccatctagattttcattgtcttcatCAccaagtagaaatgagccattgaaCctgagtcttgaacaagttattaaactgacacataactttgcaccagacctgatgattggtgaaggttattttggaaaggtctacagagcacagctgcgagatggccacattgtggcaattaaaagggcaaaaatggaacattttgcctctttacgggccgaattcagtaatgaaattgcattactaaaaaaaattgaacacaggaatttggtccaattacttggttatatcgacaaaagaaatgaacgaatcgtcataactgagtatgttccaaacggcactcttagggagcatctagatggtcaacgtgggcttgttttaagctttaatcagcggcttgaaatagccatagatgttgctcatgggttaacttatttgcatctatatgcagagaagcccataatacacagggatgtgaagtcatcaaacattctactaaatgaaggcttcagggccaaagtggccgactttggatttgcaaggactggtcctacagagccagaccagtcacagattcagactgatgtgagaggaacagctggctatgtagatccagagtatctcaggacaaaccatctgacagtcaagagtgatgtattctcttatggagttttgctcctggaaattctttctggtcgtcgtcctattgaggtcaggagagctgcaagagaaaggatcaccgtgagatgggccttcgagaaatacaacagaggtgatgttaaggaaatattggatccaatgttgaccgagtcagtaaatgaggatatactgaataagattttcgatgtagcattccaatgtgttgctcctactcgtgctgacaggccaacaatgaaagaagttgcagagaggctgtggaagataagaagggattatgcaaaaacccaacgcagagcagaaatggctctgtaa
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| Protein seq | MFLVCFEAMCPCFGSRRKDGSEDPVLGRDGNSLNSSELRSMSDRVPPSPLRVPASPSRFSLSSSPSRNEPLNLSLEQVIKLTHNFAPDLMIGEGYFGKVYRAQLRDGHIVAIKRAKMEHFASLRAEFSNEIALLKKIEHRNLVQLLGYIDKRNERIVITEYVPNGTLREHLDGQRGLVLSFNQRLEIAIDVAHGLTYLHLYAEKPIIHRDVKSSNILLNEGFRAKVADFGFARTGPTEPDQSQIQTDVRGTAGYVDPEYLRTNHLTVKSDVFSYGVLLLEILSGRRPIEVRRAARERITVRWAFEKYNRGDVKEILDPMLTESVNEDILNKIFDVAFQCVAPTRADRPTMKEVAERLWKIRRDYAKTQRRAEMAL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0018730 | OsLima_04g0018730.01 | Chr04 | 26600506 | 26603742 | + | NAM | ||
| CDS seq | atgtttcttgtgtgttttgaagccatgtgcccctgttttggttcaagaaggaaggatgggagcgaagaccctgttcttggaagggatGgaaattccttgaattcttctgagctgaggtcaatgtctgatagagttcctccaagccctcttcgagtacctgcaagtccatctagattttcattgtcttcatCAccaagtagaaatgagccattgaaCctgagtcttgaacaagttattaaactgacacataactttgcaccagacctgatgattggtgaaggttattttggaaaggtctacagagcacagctgcgagatggccacattgtggcaattaaaagggcaaaaatggaacattttgcctctttacgggccgaattcagtaatgaaattgcattactaaaaaaaattgaacacaggaatttggtccaattacttggttatatcgacaaaagaaatgaacgaatcgtcataactgagtatgttccaaacggcactcttagggagcatctagatggtcaacgtgggcttgttttaagctttaatcagcggcttgaaatagccatagatgttgctcatgggttaacttatttgcatctatatgcaggtatgctttgtcacatctttaaagtagcttacagagattctagtttgactattcctattggcaatttgcatatgtattttaTttatttgttctgtacttttatgcttttagagaagcccataatacacagggatgtgaagtcatcaaacattctactaaatgaaggcttcagggccaaagtggccgactttggatttgcaaggactggtcctacagagccagaccagtcacagattcagactgatgtgagaggaacagctggctatgtagatccagagtatctcaggacaaaccatctgacagtcaagagtgatgtattctcttatggagttttgctcctggaaattctttctggtcgtcgtcctattgaggtcaggagagctgcaagagaaaggatcaccgtgagatgggccttcgagaaatacaacagaggtgatgttaaggaaatattggatccaatgttgaccgagtcagtaaatgaggatatactgaataagattttcgatgtagcattccaatgtgttgctcctactcgtgctgacaggccaacaatgaaagaagttgcagagaggctgtggaagataagaagggattatgcaaaaacccaacgcagagcagaaatggctctgtaa
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| Protein seq | MFLVCFEAMCPCFGSRRKDGSEDPVLGRDGNSLNSSELRSMSDRVPPSPLRVPASPSRFSLSSSPSRNEPLNLSLEQVIKLTHNFAPDLMIGEGYFGKVYRAQLRDGHIVAIKRAKMEHFASLRAEFSNEIALLKKIEHRNLVQLLGYIDKRNERIVITEYVPNGTLREHLDGQRGLVLSFNQRLEIAIDVAHGLTYLHLYAGMLCHIFKVAYRDSSLTIPIGNLHMYFIYLFCTFMLLEKPIIHRDVKSSNILLNEGFRAKVADFGFARTGPTEPDQSQIQTDVRGTAGYVDPEYLRTNHLTVKSDVFSYGVLLLEILSGRRPIEVRRAARERITVRWAFEKYNRGDVKEILDPMLTESVNEDILNKIFDVAFQCVAPTRADRPTMKEVAERLWKIRRDYAKTQRRAEMAL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.225455 | 0.786465 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0503600 | RBH | 2.009165 | 1.122295 | 1.594315 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g42480 | RBH | 0.654810 | 0.577906 | 0.282630 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0503600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0019020 | RBH | 0.511366 | 37.336555 | 2.063144 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0019790 | RBH | 0.192205 | 4.845901 | 1.331691 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0019500 | RBH | 1.961894 | 25.116289 | 6.899019 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0019240 | RBH | 0.174650 | 0.515665 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0019440 | RBH | 4.444238 | 6.948589 | 19.637257 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0394600 | RBH | 6.139429 | 32.1948635 | 9.6629515 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0018250 | RBH | 0.287844 | 1.889619 | 0.294807 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0394300 | RBH | 6.029891 | 24.2531265 | 5.0422385 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0020640 | SBH | 0.000000 | 0.295251 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0018580 | RBH | 0.155865 | 14.132297 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0018690 | RBH | 1.300075 | 24.115866 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0019070 | RBH | 0.859170 | 2.786506 | 0.571292 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0019230 | RBH | 0.049492 | 6.813022 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G018530 | RBH | 0.337121 | 3.055661 | 0.486285 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0018470 | RBH | 0.863370 | 33.105244 | 1.959404 |
