Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0017990 | OGI:04074910 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:26106498-26111463 | ||||||||
| Gene Symbol | OsbHLH065, OsbHLH65 | ||||||||||
| DNA seq | gcttctagcagaaactgagcacttcttacaaaaactacagcagggctgatgtactcaatcacattgaacttggttgctagcagcaacatgctgctactatcatgttactgaagagacacatagttacatatcacatatgggcacatcaggtagtctagtactatcacctcgctatgtatgatgattacacacatatgtccggcgctaacacagactcatcagtagcacactctcacggtctcacaccgacctgcaggcagggttgcagctactactatattacaggcaagagatccgacgagagtgaaacacggtttgcttattagtttttgctttgttaggagatttgatgaatcgggtcagacacttggaagttggaactctacaccgcccccagacaaaagtgctcccctcctcctctaggcctcttagacccccgagcctccaggccggttcctccgttcacctgcgcctggtcgtgttcgccggcgcccacaggtcggcgccgttgctctgcgtcagctgcagcgtctggtccactggaaccaggcagaggccacggttcctcaggctgtagtggtcgggatcctggatcacagcaagtgacatgcttgttacatacaaagattactacaaagttttcctttttctagccaaaatttaacatttcgaattttcgttaaactttcagagtatatatgatgacttaggtagaaggatgtaggtagctgtagctgacctcaggcgcagcgccaggcaccggaggagcacgcatgtaaggggagctaagaacctgcaaaatgtttcagttgagtcacagaaaacgaaaggtaagcaggcttaaagatcacagaaatgagtgtgcggtgatcgagaacaagtacctcgagctgctggtgaagaaacttgatgtaccctgaggcctcctgaagaacagaagcagtgtccgtctgcacaaagcgagagagTttgcataaccagatgagctcaggcttctaagttttataacatgagtttgattcacaaagatgagagaAGacaggaagcaagtgcagaaatgtatagtaaataccttcccaaatggtgacactagctgctgcagtgcagccactctctcaccaatcttatccttcttctcctgatcaattgcaatttgcaaccaaagaaacctcagtcagaacaacacacaagaaaaatgaaagaacaggaaagacgtgtgaaaattagacttgagcaacatgccttcggggagacgggagcgtctctcgggtttgtgttcctcggcttcttggatgtcatgctcccaaactcctccgagctgctggtgactgctgctttcccggtgaagtagctttcattgtggttccttttgctgtgattggcgacctcggtcatcatcatcttcctcttctgctgctctcagtctttcttgccctttttttcctgctgaaaatcaggaggaaagtataggtaaggtgaccttcaccttgcttctactttgtttgctactatgaatcctccagtctctggtaaaaaggcaaacTttttacaagtgcagtggttggttcagagtcggtttcatggaaatcactgtcaggctatcactatgttcagaggctggtcttagacaagcaaaacttagtttatgagctaaggactcaactgcctcacaggtaacaataatagaaggatatgtgacaagacaaagtcaaaggtatcatgtgtctcagaacccTtttttcttcctgcagaaactatgttctagaaaattatcccaaatagggaaagaattaaaattcctcttgattaggtccctagtattctctgtctggtggcctagtattccctggctgccgttctttactctcaaggagatgtgctatcctccatcaatttaaatactgttcaactgttcagttgctaattgacaagtttgttcgtttgcaatgctgccagttgggacttatccgaaggttcctggcaaggcagaccaattgattagaagcgaccggaatatgatagggagcatagggcaaatgtatgtatgtatgtgtgtgtgtgtgtgtatatatatatatatatatatatatatatatatatatatataatatataatatattggttccttaaatatccaaggttacgtgacttgtattccccagttgagctaaaattattaaataaactattgggtcaaagcaataatataatggaaccctttatctatcaccgattcaacattagaaacgtgtcgctactggcttccatacacttgtaggacatctcaggagcaaatggtttcagacactgtgtcctgtggggCTctgaacattgtgcatatcaagcacagggtgtgataaagaaaaaggaaccaggtaaaatcactcaacaagacaacaagccaccttattagaaaagctagccctatgaaaatatactggctattccatgtgctctaaaaagaagctaataggttactgtggtttctaaccatgtcatgtactcggtttatttcacctagtatatataactagcatgatctatatctattgtcTAtagttcccaggacgttataacttataagcgccccaccgtttaccgtcgccgggaaatcttttgtgacttgtgagacatatttacaccggcaggatgctactacttgcaaggaacagggtgagccgctagttagcacttccaaagccattccgttccagaaaaaaccaatttttaactatgaattcgaacatatactccctccagttctataTtttttgtcgttttgaacgtaatgacatttaccaaggagtaattaataggaggtctatttatggttctaccgatattaaatacatttgaactcaacattttttctcacgttgaaaaccacaattacactaactacaggggtaaactcctctgaagcgttcactaatctctcacacatacAaaaaatttgatccaacctatAaaacacttcaacgataggaaatacggaaccgaaggaagcatcaaacaagttcatgttttcctgtatgaagaatAaaaggaaggctaacatgtgtaaagtagcaaagcttattgtacaggagttatacaaacgtgacccgtaatctatcacactacagtgcagcatgatgtgtatgtgtgtgtctcgtggcttgtgatgatgaacaaccacataggagtactccttgtcatcacatctcagcagttggggggtcccatcctttggtggagaagacaacaaggtgccagctatcgttcaggctagctagcaagcgacattagtgtgcctgcttccttccatttgtgcaccactccggggattcagacAacaggttcattgactacgttgtactagaggaagaggtcgtccagctgcaccgcttactggtagctaatagtcatgacagattagctaatagctatagctatcactcctttttggaagtattaacggaaacctaattgtccttttaagtgatacaagccagcttaaTtacttgttttgttactctaggtgttccatctgcctgcatctgaatccagtttgtttctttctaatattttttttctcactttgagcctgcatgaaccatgtactgcagtactagggggtgttcgggaagtttagcccctataacttatgttttcgagagagggggctaaagtttagccctactttagtccctccaaccaaacaccacctaggatatgcatgcaccagcttatatttctttgaatttttcctatctgaagaaatgggagaggtgtggaacaaaagctctggaaaaaaaggacaaaacgctcgtctgttttggtgatgcatgcatgctgctgctgctggtggtggcggcggggggcgtgtgattgaggaatttgtcaactagcagcggcatgcacgcgtcggccgggcgggtggttttccaagcaccggcagccgagcgatcgacccgatctcattctcatcagcaacacacacatgcatttactccttctccagctcttcacctaaaccgcttcagactgaaaccctgacggatagctgccacctgacccgtagtatcgatcttttatcaggctgcaatttaagcgtagttaagttttaaccatggcgacgctagcatcagtaccctcgtcgcgacgcaatcagcagcggcagcagcagcacagccacaacgaccacttggtagctaattaatcatttctggagagcttaattaagcacgtcaggtcatgtctaattaatctggtctccgacgttagctagacgatcgatcaaacacagccaggagccagctatacagaaaggacgacgtgcgccaaccgaggctctcgctcgctgacacgtacgtacggacgaacaccatgcatactccatactccacctcctcctccatggcttatgctatggccctccctccctccctctctctctctctctctcaagaacaaaagaccaagcagtctatgtagtgcaaaAGaaattaaggtcactgttcactacagttagccggtgcagctaacaacaggtcaacagcctaacatgcatccggcttactgatagtgacacagtatgaacacacaggtgatagatggcacggattacatgagcttaaagacatttgctgcaggcacagcgagaggaagatcgatcaataccgaagctagggagaagagtgaagtgatcttaccaagctgtgaaaaacgacgatcactctgagcaaaagagatgcaagcgtcgatacgattgagctggaagaagatgtagcagcttcgtgtatctccgaggcaggagctcctccgatggcagaaatcaaggatgtgtcctcctcctgcgctgcggagtatcgttgtgtatctatcccccttgtcacctgtctcctggaagaaagagagagagaggaggcttatggagggtttagtctttaaggatggattcaGaggggccggagacacatttgg
More
|
||||||||||
| CDS seq | atgatgatgaccgaggtcgccaatcacagcaaaaggaaccacaatgaaagctacttcaccgggaaagcagcagtcaccagcagctcggaggagtttgggagcatgacatccaagaagccgaggaacacaaacccgagagacgctcccgtctccccgaaggagaagaaggataagattggtgagagagtggctgcactgcagcagctagtgtcaccatttgggaagacggacactgcttctgttcttcaggaggcctcagggtacatcaagtttcttcaccagcagctcgaggttcttagctccccttacatgcgtgctcctccggtgcctggcgctgcgcctgaggatcccgaccactacagcctgaggaaccgtggcctctgcctggttccagtggaccagacgctgcagctgacgcagagcaacggcgccgacctgtgggcgccggcgaacacgaccaggcgcaggtga
More
|
||||||||||
| Protein seq | MMMTEVANHSKRNHNESYFTGKAAVTSSSEEFGSMTSKKPRNTNPRDAPVSPKEKKDKIGERVAALQQLVSPFGKTDTASVLQEASGYIKFLHQQLEVLSSPYMRAPPVPGAAPEDPDHYSLRNRGLCLVPVDQTLQLTQSNGADLWAPANTTRRR |
||||||||||
| Function | Transcription factor bHLH153 [UniProtKB/Swiss-Prot:Q7XJU2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0017990 | OsLima_04g0017990.01 | Chr04 | 26106563 | 26111463 | - | NAM | ||
| CDS seq | atgatgatgaccgaggtcgccaatcacagcaaaaggaaccacaatgaaagctacttcaccgggaaagcagcagtcaccagcagctcggaggagtttgggagcatgacatccaagaagccgaggaacacaaacccgagagacgctcccgtctccccgaaggagaagaaggataagattggtgagagagtggctgcactgcagcagctagtgtcaccatttgggaagacggacactgcttctgttcttcaggaggcctcagggtacatcaagtttcttcaccagcagctcgaggttcttagctccccttacatgcgtgctcctccggtgcctggcgctgcgcctgaggatcccgaccactacagcctgaggaaccgtggcctctgcctggttccagtggaccagacgctgcagctgacgcagagcaacggcgccgacctgtgggcgccggcgaacacgaccaggcgcaggtga
More
|
|||||||
| Protein seq | MMMTEVANHSKRNHNESYFTGKAAVTSSSEEFGSMTSKKPRNTNPRDAPVSPKEKKDKIGERVAALQQLVSPFGKTDTASVLQEASGYIKFLHQQLEVLSSPYMRAPPVPGAAPEDPDHYSLRNRGLCLVPVDQTLQLTQSNGADLWAPANTTRRR |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0017990 | OsLima_04g0017990.02 | Chr04 | 26106498 | 26111461 | - | NAM | ||
| CDS seq | atgatgatgaccgaggtcgccaatcacagcaaaaggaaccacaatgaaagctacttcaccgggaaagcagcagtcaccagcagctcggaggagtttgggagcatgacatccaagaagccgaggaacacaaacccgagagacgctcccgtctccccgaaggagaagaaggataagattggtgagagagtggctgcactgcagcagctagtgtcaccatttgggaagacggacactgcttctgttcttcaggaggcctcagggtacatcaagtttcttcaccagcagctcgaggttcttagctccccttacatgcgtgctcctccggtgcctggcgctgcgcctgaggatcccgaccactacagcctgaggaaccgtggcctctgcctggttccagtggaccagacgctgcagctgacgcagagcaacggcgccgacctgtgggcgccggcgaacacgaccaggcgcaggtga
More
|
|||||||
| Protein seq | MMMTEVANHSKRNHNESYFTGKAAVTSSSEEFGSMTSKKPRNTNPRDAPVSPKEKKDKIGERVAALQQLVSPFGKTDTASVLQEASGYIKFLHQQLEVLSSPYMRAPPVPGAAPEDPDHYSLRNRGLCLVPVDQTLQLTQSNGADLWAPANTTRRR |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0017990 | OsLima_04g0017990.03 | Chr04 | 26106548 | 26108051 | - | IsoSeq | ||
| CDS seq | acttgtaaaaAgtttgcctttttaccagagactgcctatactttcctcctgattttcagcaggaaaaaaagggcaagaaagactgagagcagcagaagagga |
|||||||
| Protein seq | TCKKFAFLPETAYTFLLIFSRKKRARKTESSRRG |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr04 | 26107940 | 26111193 | - | OsLima_04g0017990.02 | OsLima_04g0017990.02,OsLima_04g0017990.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.161221 | 0.087609 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0493100 | RBH | 1.771726 | 1.841078 | 8.891873 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g41570 | RBH | 0.964123 | 0.823242 | 1.268205 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0493100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0018280 | RBH | 1.815613 | 27.199617 | 1.238840 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0019060 | RBH | 0.430180 | 3.234060 | 2.821149 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0018770 | RBH | 2.926378 | 8.895435 | 1.053183 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0018480 | RBH | 0.259165 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0018710 | RBH | 11.486509 | 5.290818 | 6.508732 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0385300 | RBH | 4.758054 | 32.5334625 | 16.0133625 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0017490 | RBH | 0.451251 | 0.203722 | 1.194303 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0385200 | RBH | 14.1520785 | 13.9376305 | 4.687558 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0017840 | RBH | 1.712410 | 2.205448 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0017930 | RBH | 0.706743 | 23.683279 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0018340 | RBH | 4.021273 | 0.114419 | 0.779065 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0018500 | RBH | 0.488732 | 3.034627 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G017780 | RBH | 1.197417 | 0.0 | 3.030838 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0017730 | RBH | 0.732023 | 25.977488 | 7.429113 |
