Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0017040 | OGI:04073050 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:25408447-25409455 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gcacacgattcacaccaattgatggcttgatgttacagtaccttccaagtctttttctccccttatactagcaggtcagcaggttttccttccaacagtaaacgataattgttgttacatgtactactccaacagtaaacgatattcgatattttggagtactatttactctctgctccaatgaataaatcaggacatcaggtgcgcctcttatatactcctatatAaaaAGAAAGCTCAGCagagagaattagtatagcaactcatcagtaatcattggctcattgcaggagcaagaaccatctttgaagtgattgaaatctattcttgccacgcacaacaatctccctgttgtacacctttgtggtagagtggcagtccaagcacactctcagattcttggataactgaattgttgcaccgagacgcagtttcatcaggctgaaggcaatggccaacttcttgctgtgatgtgtaacggaggtttccttctcattttgatcaaagtcgagccttacatcatctgtacctggccataatgatacttacaatcatctcctcagctttcgcatatatctccgtcatcagctgggggtgggggtgggatggtcactgtcttcagcgaagaactcaaagagaattcaccctccaactcaatgggaatgcatcctggatcagtccagtgtgattgactaattgggtccagtggatgcctcagtgcatcttgcatgttactatcaacatttgtgtgcactgtgcaggcagaaactagtgcactccaaattactgcatttggctctaccgcatggttttgataaactgatatgcctcatcgatcagtccagctcgcactaacagatcaaccatacagccatagtgctcgatccttggctggcgccataatcccgggtcattgctaacaaaatgcctgcgatcctactcatctaagcagctgtgaactgcaagacaggagaataccagtgaatgccacgtccgtgggctttaacat
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| CDS seq | atgttaaagcccacggacgtggcattcactggtacagatgatgtaaggctcgactttgatcaaaatgagaaggaaacctccgttacacatcacagcaagaagttggccattgccttcagcctgatgaaactgcgtctcggtgcaacaattcagttatccaagaatctgagagtgtgcttggactgccactctaccacaaaggtgtacaacagggagattgttgtgcgtggcaagaatagatttcaatcacttcaaagatggttcttgctcctgcaatga |
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| Protein seq | MLKPTDVAFTGTDDVRLDFDQNEKETSVTHHSKKLAIAFSLMKLRLGATIQLSKNLRVCLDCHSTTKVYNREIVVRGKNRFQSLQRWFLLLQ |
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| Function | Pentatricopeptide repeat-containing protein At5g06540 [UniProtKB/Swiss-Prot:Q9FG16] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0017040 | OsLima_04g0017040.01 | Chr04 | 25408447 | 25409455 | - | NAM | ||
| CDS seq | atgttaaagcccacggacgtggcattcactggtacagatgatgtaaggctcgactttgatcaaaatgagaaggaaacctccgttacacatcacagcaagaagttggccattgccttcagcctgatgaaactgcgtctcggtgcaacaattcagttatccaagaatctgagagtgtgcttggactgccactctaccacaaaggtgtacaacagggagattgttgtgcgtggcaagaatagatttcaatcacttcaaagatggttcttgctcctgcaatga
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| Protein seq | MLKPTDVAFTGTDDVRLDFDQNEKETSVTHHSKKLAIAFSLMKLRLGATIQLSKNLRVCLDCHSTTKVYNREIVVRGKNRFQSLQRWFLLLQ |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0469400 | SBH | 1.760141 | 2.541341 | 0.360990 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g40475 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0469400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0017290 | RBH | 0.000000 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0018090 | RBH | 0.0 | 0.000000 | 0.330227 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0017780 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0017510 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0000930 | SBH | 6.596344 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0374500 | SBH | 0.058382 | 0.2360795 | 0.12886 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0023600 | SBH | 0.043880 | 0.066512 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0373100 | SBH | 0.037114 | 0.0936045 | 0.798911 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0020830 | SBH | 0.174450 | 0.055256 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0016890 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0016910 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0017400 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0017510 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G016790 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0016740 | RBH | 0.0 | 0.0 | 0.0 |
