Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0017020 | OGI:04073000 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:25393349-25396920 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | actcgcacgcacacctttcttcttctacatggagagattacgtacgagccgtatccacgtctatggcttcatcatcatcctcctcctcctcgtacaagctacggccgcggccacctcgcggtgcccggcgcaacaggccgccgcgctgctccggctcaaacgatccttccaccaccaccaccagccgctcctcctgccgtcgtggcgcgccgccacggactgctgcctctgggaGggcgtgtcgtgcgacgcggcggcctccggcgtcgtcgtcaccgcgctcgacctcggtggccacggggtacatagccccggcggcctggacggcgccgccctcttccagctcacgtcgctccggcggctcagcctcgcggggaacgacttcggcggcgcggggctcccggcgtccgggctcgaggggctcgccgagctcacccacctcaacctctccaacgccggcttcgccggccagatacccatcggcgtcggcagcctgagggagctcgtgtccctcgacctctcctccatgccactctccttcaagcaaccgagcttcagagctgtaatggccaacctgacgaagctgagggagctccggctggacggggtggacatgtcggcggcggcggcggccggagactggtgcgacgtgctcgcggaatccgcccccaagctccagctcctcaccttgcagtcctgcaagctctccggcgccatacgctcctccttctcgcgcctccggtccctcgtcgtcatcgacctgtcatacaaccagggcttctccgacgcgtccggcgagcccttcgccttgtcgggtgagatccccggcttcttcgccgagctcagctcactggcgattctcaacctctccaacaatggcttcaacggctcgtttcctcaaggagtgttccacctggagaggctcagggtgctagacgtgtcgtcgaacaccaacctctccggcagcttgccggagttcccggccgccggggaagcctccctggaggtgctggacctgagcgagaccaatttttccggccAaattccgggctccatcggaaacctgaagcgtctgaagatgctggacatcagtggcagcaacggccgcttctctggtgctcttcctgattcgatcagtgagcttacatccttgagcttcttggacctgagcagcagcgggttccaactcggggaattgcctgcttccatcggcaggatgcggtcactgtccacgcttcggctgagtgagtgtgccatctccggcgagataccgtcgtccgttgggaatctcacacgcttgagagagttggatctctcacagaacaatctcacaggtcagtttcaactttcttgtcgtacacaaagcacacaaaactgctatcttggaactcctttttagatagtttttgggttatgttatttgtagggccaataacctccatcaacaggaaaggggcattcctgaacctagagatattgcagctatgttgtaactccctgtcagggccagttccagtcttcttattctcactcccacgattggagttcatatcgctcatgtcaaacaatctagcaggtcccctccaagaattcgacaatccttctccgtccctaacatctgtttacctgaattacaaccagttgaatggatcaatacccaggtctttctttcagctcatgggcttacagacactagaTCtctctaggaacggcttgagtggggaagtacaacttagttacatttggagactcacaaatctaagtaacctatgcctgtcagcaaacagactgacagtgatagctgatgatgaacacatctacaacagctcttcctctgcatcactccttcaacttaactccctggggttagcatgctgcaacatgaccaagatccctgccatactaaggtcagttgtggtgaatgaccttgatctctcgtgcaaccaacttgatgggcctataCccgattggatatgggcaaatcagAacgagaacatagatgtcttcaagttcaatctttcgcgcaatagatttactaacatggagctccctctggctaatgccagcgtatactatcttgatcttagtttcaactatcttcaagggcctctacctgtcccctcatctccacagttcttggattactccaacaacctattctcatcaatcccggagaacttgatgtcaaggttgagcagttctttctttctgaacttggccaacaattcactgcaggggggcatcccacctatcaTttgcaatgcaagtgacctcaaattccttgacctgtcttacaaccatttcagtggtcgtgttccaccttgtctactagatggacatctgaccatattgaagctgagacaaaacaaatttgaggggaccttgcctgatgacaccaaaggaggatgtgtttctcagacaatagacctgaatggaaatcaattggaggggaagctacctagatcactcactaactgcaatgacctagaaatccttgatgtgggcaacaacaatttcgtggactccttcccaagctggacaggggagctaccaaagcttagggttcttgttctacgatccaacaaattcttcggcgcagtggggggaattcctgtcgacaacggtgatcgaaacagaacacaattctctagtttgcagatcatcgatcttgcctcaaacaacttctctggcagtttgcagccgcaatggttcgatagcctcaaagcGATgatggttacaagagagggtgacgtgcgaaaggccctggagaacaacctctcggggaaattctaccgtgacacagtcgtggtcacgtacaagggcgcggccacgacattcatcagggtcctgatcgccttcacgatggtcgacttctccgacaacgcgttcaccggcaacattcctgaatccattggaaggctcacctcgctaagaggtctcaacctgtcgcataatgccttcaccggaacaatcccttctcagctcagtggattggcgcagcttgaatcgctcgatctctctttgaaccagcttagtggggagatcccagaggtgttggtgtctttaacttctgtcggctggttaaacttgtcctacaatcgtttggagggtgctattccgcagggaggtcaatttcagacgtttggaagtagctcatttgaagggaatgccgCcctatgcggcaaaccgctgtctattcggtgcaatggttcgaatgcagggcccccttcgttggagcacagtgagagctgggaggccaggacagagaccattgtactgtatatttccgttggatcagggttcggtttgggatttgcaatggccttcttgttccaagtgttccgcggaaagtgaaaaatgaagcttggtggtcaataataaatagagggaaacaacaatatgacatgccttaccttttagtatacacccatgataagtaatgtacatataagcctattctttctctatttttaaagaactgtcgagataaacttgctacacttccgttttaactgagttactctaaatagttagactaccatgaataaaagttcTaattttatggttgatgc
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| CDS seq | atggagagattacgtacgagccgtatccacgtctatggcttcatcatcatcctcctcctcctcgtacaagctacggccgcggccacctcgcggtgcccggcgcaacaggccgccgcgctgctccggctcaaacgatccttccaccaccaccaccagccgctcctcctgccgtcgtggcgcgccgccacggactgctgcctctgggaGggcgtgtcgtgcgacgcggcggcctccggcgtcgtcgtcaccgcgctcgacctcggtggccacggggtacatagccccggcggcctggacggcgccgccctcttccagctcacgtcgctccggcggctcagcctcgcggggaacgacttcggcggcgcggggctcccggcgtccgggctcgaggggctcgccgagctcacccacctcaacctctccaacgccggcttcgccggccagatacccatcggcgtcggcagcctgagggagctcgtgtccctcgacctctcctccatgccactctccttcaagcaaccgagcttcagagctgtaatggccaacctgacgaagctgagggagctccggctggacggggtggacatgtcggcggcggcggcggccggagactggtgcgacgtgctcgcggaatccgcccccaagctccagctcctcaccttgcagtcctgcaagctctccggcgccatacgctcctccttctcgcgcctccggtccctcgtcgtcatcgacctgtcatacaaccagggcttctccgacgcgtccggcgagcccttcgccttgtcgggtgagatccccggcttcttcgccgagctcagctcactggcgattctcaacctctccaacaatggcttcaacggctcgtttcctcaaggagtgttccacctggagaggctcagggtgctagacgtgtcgtcgaacaccaacctctccggcagcttgccggagttcccggccgccggggaagcctccctggaggtgctggacctgagcgagaccaatttttccggccAaattccgggctccatcggaaacctgaagcgtctgaagatgctggacatcagtggcagcaacggccgcttctctggtgctcttcctgattcgatcagtgagcttacatccttgagcttcttggacctgagcagcagcgggttccaactcggggaattgcctgcttccatcggcaggatgcggtcactgtccacgcttcggctgagtgagtgtgccatctccggcgagataccgtcgtccgttgggaatctcacacgcttgagagagttggatctctcacagaacaatctcacagggccaataacctccatcaacaggaaaggggcattcctgaacctagagatattgcagctatgttgtaactccctgtcagggccagttccagtcttcttattctcactcccacgattggagttcatatcgctcatgtcaaacaatctagcaggtcccctccaagaattcgacaatccttctccgtccctaacatctgtttacctgaattacaaccagttgaatggatcaatacccaggtctttctttcagctcatgggcttacagacactagaTCtctctaggaacggcttgagtggggaagtacaacttagttacatttggagactcacaaatctaagtaacctatgcctgtcagcaaacagactgacagtgatagctgatgatgaacacatctacaacagctcttcctctgcatcactccttcaacttaactccctggggttagcatgctgcaacatgaccaagatccctgccatactaaggtcagttgtggtgaatgaccttgatctctcgtgcaaccaacttgatgggcctataCccgattggatatgggcaaatcagAacgagaacatagatgtcttcaagttcaatctttcgcgcaatagatttactaacatggagctccctctggctaatgccagcgtatactatcttgatcttagtttcaactatcttcaagggcctctacctgtcccctcatctccacagttcttggattactccaacaacctattctcatcaatcccggagaacttgatgtcaaggttgagcagttctttctttctgaacttggccaacaattcactgcaggggggcatcccacctatcaTttgcaatgcaagtgacctcaaattccttgacctgtcttacaaccatttcagtggtcgtgttccaccttgtctactagatggacatctgaccatattgaagctgagacaaaacaaatttgaggggaccttgcctgatgacaccaaaggaggatgtgtttctcagacaatagacctgaatggaaatcaattggaggggaagctacctagatcactcactaactgcaatgacctagaaatccttgatgtgggcaacaacaatttcgtggactccttcccaagctggacaggggagctaccaaagcttagggttcttgttctacgatccaacaaattcttcggcgcagtggggggaattcctgtcgacaacggtgatcgaaacagaacacaattctctagtttgcagatcatcgatcttgcctcaaacaacttctctggcagtttgcagccgcaatggttcgatagcctcaaagcGATgatggttacaagagagggtgacgtgcgaaaggccctggagaacaacctctcggggaaattctaccgtgacacagtcgtggtcacgtacaagggcgcggccacgacattcatcagggtcctgatcgccttcacgatggtcgacttctccgacaacgcgttcaccggcaacattcctgaatccattggaaggctcacctcgctaagaggtctcaacctgtcgcataatgccttcaccggaacaatcccttctcagctcagtggattggcgcagcttgaatcgctcgatctctctttgaaccagcttagtggggagatcccagaggtgttggtgtctttaacttctgtcggctggttaaacttgtcctacaatcgtttggagggtgctattccgcagggaggtcaatttcagacgtttggaagtagctcatttgaagggaatgccgCcctatgcggcaaaccgctgtctattcggtgcaatggttcgaatgcagggcccccttcgttggagcacagtgagagctgggaggccaggacagagaccattgtactgtatatttccgttggatcagggttcggtttgggatttgcaatggccttcttgttccaagtgttccgcggaaagtga
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| Protein seq | MERLRTSRIHVYGFIIILLLLVQATAAATSRCPAQQAAALLRLKRSFHHHHQPLLLPSWRAATDCCLWEGVSCDAAASGVVVTALDLGGHGVHSPGGLDGAALFQLTSLRRLSLAGNDFGGAGLPASGLEGLAELTHLNLSNAGFAGQIPIGVGSLRELVSLDLSSMPLSFKQPSFRAVMANLTKLRELRLDGVDMSAAAAAGDWCDVLAESAPKLQLLTLQSCKLSGAIRSSFSRLRSLVVIDLSYNQGFSDASGEPFALSGEIPGFFAELSSLAILNLSNNGFNGSFPQGVFHLERLRVLDVSSNTNLSGSLPEFPAAGEASLEVLDLSETNFSGQIPGSIGNLKRLKMLDISGSNGRFSGALPDSISELTSLSFLDLSSSGFQLGELPASIGRMRSLSTLRLSECAISGEIPSSVGNLTRLRELDLSQNNLTGPITSINRKGAFLNLEILQLCCNSLSGPVPVFLFSLPRLEFISLMSNNLAGPLQEFDNPSPSLTSVYLNYNQLNGSIPRSFFQLMGLQTLDLSRNGLSGEVQLSYIWRLTNLSNLCLSANRLTVIADDEHIYNSSSSASLLQLNSLGLACCNMTKIPAILRSVVVNDLDLSCNQLDGPIPDWIWANQNENIDVFKFNLSRNRFTNMELPLANASVYYLDLSFNYLQGPLPVPSSPQFLDYSNNLFSSIPENLMSRLSSSFFLNLANNSLQGGIPPIICNASDLKFLDLSYNHFSGRVPPCLLDGHLTILKLRQNKFEGTLPDDTKGGCVSQTIDLNGNQLEGKLPRSLTNCNDLEILDVGNNNFVDSFPSWTGELPKLRVLVLRSNKFFGAVGGIPVDNGDRNRTQFSSLQIIDLASNNFSGSLQPQWFDSLKAMMVTREGDVRKALENNLSGKFYRDTVVVTYKGAATTFIRVLIAFTMVDFSDNAFTGNIPESIGRLTSLRGLNLSHNAFTGTIPSQLSGLAQLESLDLSLNQLSGEIPEVLVSLTSVGWLNLSYNRLEGAIPQGGQFQTFGSSSFEGNAALCGKPLSIRCNGSNAGPPSLEHSESWEARTETIVLYISVGSGFGLGFAMAFLFQVFRGK |
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| Function | Receptor-like protein 7 [UniProtKB/Swiss-Prot:Q9C699] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0017020 | OsLima_04g0017020.01 | Chr04 | 25393349 | 25396920 | + | NAM | ||
| CDS seq | atggagagattacgtacgagccgtatccacgtctatggcttcatcatcatcctcctcctcctcgtacaagctacggccgcggccacctcgcggtgcccggcgcaacaggccgccgcgctgctccggctcaaacgatccttccaccaccaccaccagccgctcctcctgccgtcgtggcgcgccgccacggactgctgcctctgggaGggcgtgtcgtgcgacgcggcggcctccggcgtcgtcgtcaccgcgctcgacctcggtggccacggggtacatagccccggcggcctggacggcgccgccctcttccagctcacgtcgctccggcggctcagcctcgcggggaacgacttcggcggcgcggggctcccggcgtccgggctcgaggggctcgccgagctcacccacctcaacctctccaacgccggcttcgccggccagatacccatcggcgtcggcagcctgagggagctcgtgtccctcgacctctcctccatgccactctccttcaagcaaccgagcttcagagctgtaatggccaacctgacgaagctgagggagctccggctggacggggtggacatgtcggcggcggcggcggccggagactggtgcgacgtgctcgcggaatccgcccccaagctccagctcctcaccttgcagtcctgcaagctctccggcgccatacgctcctccttctcgcgcctccggtccctcgtcgtcatcgacctgtcatacaaccagggcttctccgacgcgtccggcgagcccttcgccttgtcgggtgagatccccggcttcttcgccgagctcagctcactggcgattctcaacctctccaacaatggcttcaacggctcgtttcctcaaggagtgttccacctggagaggctcagggtgctagacgtgtcgtcgaacaccaacctctccggcagcttgccggagttcccggccgccggggaagcctccctggaggtgctggacctgagcgagaccaatttttccggccAaattccgggctccatcggaaacctgaagcgtctgaagatgctggacatcagtggcagcaacggccgcttctctggtgctcttcctgattcgatcagtgagcttacatccttgagcttcttggacctgagcagcagcgggttccaactcggggaattgcctgcttccatcggcaggatgcggtcactgtccacgcttcggctgagtgagtgtgccatctccggcgagataccgtcgtccgttgggaatctcacacgcttgagagagttggatctctcacagaacaatctcacagggccaataacctccatcaacaggaaaggggcattcctgaacctagagatattgcagctatgttgtaactccctgtcagggccagttccagtcttcttattctcactcccacgattggagttcatatcgctcatgtcaaacaatctagcaggtcccctccaagaattcgacaatccttctccgtccctaacatctgtttacctgaattacaaccagttgaatggatcaatacccaggtctttctttcagctcatgggcttacagacactagaTCtctctaggaacggcttgagtggggaagtacaacttagttacatttggagactcacaaatctaagtaacctatgcctgtcagcaaacagactgacagtgatagctgatgatgaacacatctacaacagctcttcctctgcatcactccttcaacttaactccctggggttagcatgctgcaacatgaccaagatccctgccatactaaggtcagttgtggtgaatgaccttgatctctcgtgcaaccaacttgatgggcctataCccgattggatatgggcaaatcagAacgagaacatagatgtcttcaagttcaatctttcgcgcaatagatttactaacatggagctccctctggctaatgccagcgtatactatcttgatcttagtttcaactatcttcaagggcctctacctgtcccctcatctccacagttcttggattactccaacaacctattctcatcaatcccggagaacttgatgtcaaggttgagcagttctttctttctgaacttggccaacaattcactgcaggggggcatcccacctatcaTttgcaatgcaagtgacctcaaattccttgacctgtcttacaaccatttcagtggtcgtgttccaccttgtctactagatggacatctgaccatattgaagctgagacaaaacaaatttgaggggaccttgcctgatgacaccaaaggaggatgtgtttctcagacaatagacctgaatggaaatcaattggaggggaagctacctagatcactcactaactgcaatgacctagaaatccttgatgtgggcaacaacaatttcgtggactccttcccaagctggacaggggagctaccaaagcttagggttcttgttctacgatccaacaaattcttcggcgcagtggggggaattcctgtcgacaacggtgatcgaaacagaacacaattctctagtttgcagatcatcgatcttgcctcaaacaacttctctggcagtttgcagccgcaatggttcgatagcctcaaagcGATgatggttacaagagagggtgacgtgcgaaaggccctggagaacaacctctcggggaaattctaccgtgacacagtcgtggtcacgtacaagggcgcggccacgacattcatcagggtcctgatcgccttcacgatggtcgacttctccgacaacgcgttcaccggcaacattcctgaatccattggaaggctcacctcgctaagaggtctcaacctgtcgcataatgccttcaccggaacaatcccttctcagctcagtggattggcgcagcttgaatcgctcgatctctctttgaaccagcttagtggggagatcccagaggtgttggtgtctttaacttctgtcggctggttaaacttgtcctacaatcgtttggagggtgctattccgcagggaggtcaatttcagacgtttggaagtagctcatttgaagggaatgccgCcctatgcggcaaaccgctgtctattcggtgcaatggttcgaatgcagggcccccttcgttggagcacagtgagagctgggaggccaggacagagaccattgtactgtatatttccgttggatcagggttcggtttgggatttgcaatggccttcttgttccaagtgttccgcggaaagtga
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| Protein seq | MERLRTSRIHVYGFIIILLLLVQATAAATSRCPAQQAAALLRLKRSFHHHHQPLLLPSWRAATDCCLWEGVSCDAAASGVVVTALDLGGHGVHSPGGLDGAALFQLTSLRRLSLAGNDFGGAGLPASGLEGLAELTHLNLSNAGFAGQIPIGVGSLRELVSLDLSSMPLSFKQPSFRAVMANLTKLRELRLDGVDMSAAAAAGDWCDVLAESAPKLQLLTLQSCKLSGAIRSSFSRLRSLVVIDLSYNQGFSDASGEPFALSGEIPGFFAELSSLAILNLSNNGFNGSFPQGVFHLERLRVLDVSSNTNLSGSLPEFPAAGEASLEVLDLSETNFSGQIPGSIGNLKRLKMLDISGSNGRFSGALPDSISELTSLSFLDLSSSGFQLGELPASIGRMRSLSTLRLSECAISGEIPSSVGNLTRLRELDLSQNNLTGPITSINRKGAFLNLEILQLCCNSLSGPVPVFLFSLPRLEFISLMSNNLAGPLQEFDNPSPSLTSVYLNYNQLNGSIPRSFFQLMGLQTLDLSRNGLSGEVQLSYIWRLTNLSNLCLSANRLTVIADDEHIYNSSSSASLLQLNSLGLACCNMTKIPAILRSVVVNDLDLSCNQLDGPIPDWIWANQNENIDVFKFNLSRNRFTNMELPLANASVYYLDLSFNYLQGPLPVPSSPQFLDYSNNLFSSIPENLMSRLSSSFFLNLANNSLQGGIPPIICNASDLKFLDLSYNHFSGRVPPCLLDGHLTILKLRQNKFEGTLPDDTKGGCVSQTIDLNGNQLEGKLPRSLTNCNDLEILDVGNNNFVDSFPSWTGELPKLRVLVLRSNKFFGAVGGIPVDNGDRNRTQFSSLQIIDLASNNFSGSLQPQWFDSLKAMMVTREGDVRKALENNLSGKFYRDTVVVTYKGAATTFIRVLIAFTMVDFSDNAFTGNIPESIGRLTSLRGLNLSHNAFTGTIPSQLSGLAQLESLDLSLNQLSGEIPEVLVSLTSVGWLNLSYNRLEGAIPQGGQFQTFGSSSFEGNAALCGKPLSIRCNGSNAGPPSLEHSESWEARTETIVLYISVGSGFGLGFAMAFLFQVFRGK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0480500 | RBH | 0.0 | 0.000000 | 0.344732 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g40440 | RBH | 0.0 | 0.000000 | 0.088058 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0480500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0017270 | RBH | 0.0 | 0.0 | 0.703626 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0018060 | RBH | 0.0 | 0.0 | 0.091600 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0017760 | RBH | 0.120915 | 0.0 | 1.330659 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0017490 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0017710 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0374200 | RBH | 0.037742 | 0.0405515 | 0.072872 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0016500 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0372800 | RBH | 0.0502735 | 0.0256445 | 0.2290155 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0023810 | RBH | 0.068580 | 0.050293 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0016870 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0016890 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0017380 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0017490 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G016770 | RBH | 0.045014 | 0.0 | 0.203757 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0016720 | RBH | 0.0 | 0.0 | 0.0 |
