Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0016960 | OGI:04072900 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:25360753-25363590 | ||||||||
| Gene Symbol | OsFbox220, Os_F0518 | ||||||||||
| DNA seq | atgactatgatggtgattctcaagctggcaaaataatgagaaattcaatcccagaccttcctgaggtacgacatactacctccgttttttaatagatgacgccgttgactttttctcacatgtttgaccattcgtcttattcAaaaaatttacgtaattataatttattttgttatgagttgctttatcactcatagtactttaagtgtgatttatatcttatacatttgcataaaatttttgaataaggcgaatggtcaaacatgcgagaaaaagtcaacggcgtcatctattaaaaaacggagggagtacgaggcattgaattccgatgatccagaaattttctttagcctgggcatgcttaggctgcgtttgagatgacatctatgatgagattatggtccacatgcaaaacgagacaagtgattaggctatggttaattaggtattaattatccatagattaaaaaaaaggatataacaaaacagaagagagagatagtgacctctgacaataatctatcagcatcaagagtccaataacatgttctgcttgtttgccattttttgctacatgtcttaaactagtgcacaattaaaaggctgctttggtgctcaaatagtcgtgcaggacaccatactaaactacagactgcaccatatagaagcatgacgcctggcgccacttgttgcccaggagcgaatgccattggctagcagaggaacagcatcagagtccacagcggcaaaagactgggagcccgggcagctggccagctgcccatgctggccggcctttgaatccgccgCtgcttagatttcaagcataatatcaccacgactcacccatcggactgattatcttgctgactgtgctaggctggctgtatattactccattttttttatatgaccatatggatttgtaatataaatgttgatctttatgtcctccattttttcttcacgcattctgatgtttgtgtatgcaggacataTTgtttcgtatacagtcctttatgtcaatgcgtgaagctgctcgtgctgcttgcgtatctcgtgcttttctacattcctggaggtgtcatcccaatcttatctttaaTaaagatacgattggcttgaagagaaatgtttttggagagaatttccacggaaaaattgggcgcattctcaggaaccactcaggcattagcttgaaaacgttccagcttgactacagtggtatgtgtgggttcgatggcactagttatcttgacagttggcttcagattgctcttaaaccagagattgaagaactcaccctttttttgcctgaaacaaacaaacaataCAGcttcccatgctcacttttatctgatggggtccgagactcacttcggtacattaaacttcgatgttgtgccctccatcccacacctgaacttggccccttgagaagcctatcaaatctgcatctgttgtatgtgagcattacatgggctgagttAGagtgccttctttccaactctcttgctctggagcatttagagctcaatcattgcaaggggataatttgcctgaagataccttgcaccctgcagcagctcagcagccttaatgtcgttgaatgctcaggcttgaaagtgatagagagcaaagctccaaatctctctagtctttttgttagaggatccagggtaaacttctcccttgtagaaacattgcaaataaagaaactagacatgggacgtgcaatctgtgatgctcgggccaaactgccatccattatgccaaatcttgaaactcttgtcattgaatcggggcatgaggtatgtattctctaaaagatgaggtgctgtagtatggcgatatatacggattactttagtacaatgatatatacggattacattagtataatgatatatatggattacgttagtgagtgttatataccgattacattagtgatacctgttgtgtaataaatcttatacatgccatatttgttgtgcaggtggttgatgcaccaatgctgtctaccaaattcctctaccttaagcacctgaccattcatatgataacaggatcgaccatttcccggccatatgactaTttctctctggtttcttttattgatgcgtctccgtccttggagactttgatattaaatgtatgacattggcactgttcattcattcatttcatcctccaaagctttttgatcactctgggtctaattcaagcatatcatccttttcatggtcaggtgactcaggtacgtatggtgcatgaatcgattttcacggattcacaactgagacacatccctggacaccgccatggccacctcaagagtgtgaagatcactggtttcagctctgcgaagagcttggtggaactgacatgttatatcctcaataatgcggtgtcacttgagtgtcttacattggataccatttatggtcctaggtgtgatcaagataagtataggcggtgttttcccatgatagatggtgttctcacggaagctccaaGggggctcgcggctatcagaacatacattgaggataaagttccatctacagttaatttgattgttctggaaccttgcagccggtgccatgttagaagaagagggtgaacatcatctcaatcatgcaatgccgattccattcaattttagatgaaccaatatttgtttcctgagctatttatggctgtggcccaatgtacaatagtttaattatcttagatggacaatggaccaagctttatctctgtattatcagacctgtttaatgtttattttttgctgtacatgtataagctgaagatttatatgtttttgtccaa
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| CDS seq | atgactatgatggacataTTgtttcgtatacagtcctttatgtcaatgcgtgaagctgctcgtgctgcttgcgtatctcgtgcttttctacattcctggaggtgtcatcccaatcttatctttaaTaaagatacgattggcttgaagagaaatgtttttggagagaatttccacggaaaaattgggcgcattctcaggaaccactcaggcattagcttgaaaacgttccagcttgactacagtggtatgtgtgggttcgatggcactagttatcttgacagttggcttcagattgctcttaaaccagagattgaagaactcaccctttttttgcctgaaacaaacaaacaataCAGcttcccatgctcacttttatctgatggggtccgagactcacttcggtacattaaacttcgatgttgtgccctccatcccacacctgaacttggccccttgagaagcctatcaaatctgcatctgttgtatgtgagcattacatgggctgagttAGagtgccttctttccaactctcttgctctggagcatttagagctcaatcattgcaaggggataatttgcctgaagataccttgcaccctgcagcagctcagcagccttaatgtcgttgaatgctcaggcttgaaagtgatagagagcaaagctccaaatctctctagtctttttgttagaggatccagggtaaacttctcccttgtagaaacattgcaaataaagaaactagacatgggacgtgcaatctgtgatgctcgggccaaactgccatccattatgccaaatcttgaaactcttgtcattgaatcggggcatgaggtggttgatgcaccaatgctgtctaccaaattcctctaccttaagcacctgaccattcatatgataacaggatcgaccatttcccggccatatgactaTttctctctggtttcttttattgatgcgtctccgtccttggagactttgatattaaatgtgactcaggtacgtatggtgcatgaatcgattttcacggattcacaactgagacacatccctggacaccgccatggccacctcaagagtgtgaagatcactggtttcagctctgcgaagagcttggtggaactgacatgttatatcctcaataatgcggtgtcacttgagtgtcttacattggataccatttatggtcctaggtgtgatcaagataagtataggcggtgttttcccatgatagatggtgttctcacggaagctccaaGggggctcgcggctatcagaacatacattgaggataaagttccatctacagttaatttgattgttctggaaccttgcagccggtgccatgttagaagaagagggtga
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| Protein seq | MTMMDILFRIQSFMSMREAARAACVSRAFLHSWRCHPNLIFNKDTIGLKRNVFGENFHGKIGRILRNHSGISLKTFQLDYSGMCGFDGTSYLDSWLQIALKPEIEELTLFLPETNKQYSFPCSLLSDGVRDSLRYIKLRCCALHPTPELGPLRSLSNLHLLYVSITWAELECLLSNSLALEHLELNHCKGIICLKIPCTLQQLSSLNVVECSGLKVIESKAPNLSSLFVRGSRVNFSLVETLQIKKLDMGRAICDARAKLPSIMPNLETLVIESGHEVVDAPMLSTKFLYLKHLTIHMITGSTISRPYDYFSLVSFIDASPSLETLILNVTQVRMVHESIFTDSQLRHIPGHRHGHLKSVKITGFSSAKSLVELTCYILNNAVSLECLTLDTIYGPRCDQDKYRRCFPMIDGVLTEAPRGLAAIRTYIEDKVPSTVNLIVLEPCSRCHVRRRG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0016960 | OsLima_04g0016960.01 | Chr04 | 25360753 | 25363590 | + | NAM | ||
| CDS seq | atgactatgatggacataTTgtttcgtatacagtcctttatgtcaatgcgtgaagctgctcgtgctgcttgcgtatctcgtgcttttctacattcctggaggtgtcatcccaatcttatctttaaTaaagatacgattggcttgaagagaaatgtttttggagagaatttccacggaaaaattgggcgcattctcaggaaccactcaggcattagcttgaaaacgttccagcttgactacagtggtatgtgtgggttcgatggcactagttatcttgacagttggcttcagattgctcttaaaccagagattgaagaactcaccctttttttgcctgaaacaaacaaacaataCAGcttcccatgctcacttttatctgatggggtccgagactcacttcggtacattaaacttcgatgttgtgccctccatcccacacctgaacttggccccttgagaagcctatcaaatctgcatctgttgtatgtgagcattacatgggctgagttAGagtgccttctttccaactctcttgctctggagcatttagagctcaatcattgcaaggggataatttgcctgaagataccttgcaccctgcagcagctcagcagccttaatgtcgttgaatgctcaggcttgaaagtgatagagagcaaagctccaaatctctctagtctttttgttagaggatccagggtaaacttctcccttgtagaaacattgcaaataaagaaactagacatgggacgtgcaatctgtgatgctcgggccaaactgccatccattatgccaaatcttgaaactcttgtcattgaatcggggcatgaggtggttgatgcaccaatgctgtctaccaaattcctctaccttaagcacctgaccattcatatgataacaggatcgaccatttcccggccatatgactaTttctctctggtttcttttattgatgcgtctccgtccttggagactttgatattaaatgtgactcaggtacgtatggtgcatgaatcgattttcacggattcacaactgagacacatccctggacaccgccatggccacctcaagagtgtgaagatcactggtttcagctctgcgaagagcttggtggaactgacatgttatatcctcaataatgcggtgtcacttgagtgtcttacattggataccatttatggtcctaggtgtgatcaagataagtataggcggtgttttcccatgatagatggtgttctcacggaagctccaaGggggctcgcggctatcagaacatacattgaggataaagttccatctacagttaatttgattgttctggaaccttgcagccggtgccatgttagaagaagagggtga
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| Protein seq | MTMMDILFRIQSFMSMREAARAACVSRAFLHSWRCHPNLIFNKDTIGLKRNVFGENFHGKIGRILRNHSGISLKTFQLDYSGMCGFDGTSYLDSWLQIALKPEIEELTLFLPETNKQYSFPCSLLSDGVRDSLRYIKLRCCALHPTPELGPLRSLSNLHLLYVSITWAELECLLSNSLALEHLELNHCKGIICLKIPCTLQQLSSLNVVECSGLKVIESKAPNLSSLFVRGSRVNFSLVETLQIKKLDMGRAICDARAKLPSIMPNLETLVIESGHEVVDAPMLSTKFLYLKHLTIHMITGSTISRPYDYFSLVSFIDASPSLETLILNVTQVRMVHESIFTDSQLRHIPGHRHGHLKSVKITGFSSAKSLVELTCYILNNAVSLECLTLDTIYGPRCDQDKYRRCFPMIDGVLTEAPRGLAAIRTYIEDKVPSTVNLIVLEPCSRCHVRRRG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0479800 | RBH | 1.772034 | 1.603051 | 3.801438 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g40370 | RBH | 1.189105 | 1.073738 | 0.971114 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0479800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0017210 | RBH | 0.094123 | 4.580782 | 3.309861 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0018000 | RBH | 0.124543 | 2.536591 | 0.322590 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0017700 | RBH | 0.839348 | 2.236172 | 2.981884 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0017430 | RBH | 0.142383 | 0.089185 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0017650 | RBH | 3.104416 | 5.197836 | 6.473035 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0373500 | RBH | 1.7461155 | 1.95294 | 2.0553705 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0016440 | RBH | 0.097193 | 0.396938 | 0.643914 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0372000 | RBH | 2.154792 | 1.273057 | 10.358077 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0016950 | RBH | 0.244120 | 0.171973 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0016810 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0016830 | RBH | 0.000000 | 16.376398 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0017320 | RBH | 0.000000 | 0.150807 | 0.145426 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0017430 | RBH | 0.076866 | 0.902781 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G016710 | RBH | 0.126630 | 0.445606 | 1.206765 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0016660 | RBH | 0.304841 | 5.071267 | 1.006947 |
