Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0016640 | OGI:04072210 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:25133426-25139572 | ||||||||
| Gene Symbol | BGLU9, Os4bglu9, Os4BGlu9, - | ||||||||||
| DNA seq | actcaatttcgatgttcaatgaaaaaaaagaaggcaatgcgtgcgactcttttcatccctgtttcatttctcggaggaacttcttgaaccaatgggctgaattcttggggtgtctcttcatcccatcatcgtaatccacaaagtttagcccaaaccggagtgtgtagccatccgcccactcaaagttgtcaagcagagaccatgcaaagtaccccttcacgtttgctccatccctgtggaggcatatggaataatgcagtgttagtaccatctttaagttgtctactgatagctgagtgtctgaattgatgttctgacctcatagcatttcgcagggcgagaaggtgcttgtgataatattctatcctcgtattatcattcagggcctccttgagtggcatggtcttgttattgacttcatcaacaccttgagatgtacgagtacaaagaatcagtaagattcatacacttttagttagaagctagaggagaactctctctctctctctctctcacatagataggagaagaaaaaatattcaagtcctatgtgcacttactggctagattggggagaaaataggaaaatagaaagaagaatcagaaggtgttatagtagtgttggtttgaacaaatgcggagaaattgtatgacctatatgtttgtgggaacttaccattttcagtaataaagatggtaggattgccgtagttttccttgatataaagcaacaattcacggagcccttgagggtatatatgaagccaagatgaagcagcctacacacatattgtttatagagttcaatcatgtcacctgatcattgttttgcacttttactaataatttgttttgtgggtaacaaagctgtaggtcacctgaggaccaatgagagtaccgtttcgactacctagcataattgggcaaggttagcacctagtagcaaaaaaaaaaaaaaagctacaaaatgcatgtatccaaaattccaaaaaaattgccatatgtttatatttcatggttcaaacgcacaaaagaagttgactgatcccagaatatgttgactcaccggtaatcctagcgtggaaatcggtattgtagctgttcttaagaccatacgatggaagaacattctcggcatagcttgaagagtagtaattaagtccaatgaaatcaaatgcacccttgaccatttcagattgctctttggtgaactttggcaagcgatttccaaccaattctctcatgtttagggggtagtcccctctaatgagaggatccataagcctagaaaggatttcatagttagaattttcagtctcctaatgaagaaattatgtgtgacaaagaatttaccatccaagcacgaaatctagaacacgtcttgctgcatccttgttggttttggattgggagaagggaacataccactgtgagttcacaattattccaatcttccccttttgtaaggcctgcatttgtcaagcattttgttgttccttttgatttgaaaaacagaattgattctactaagcattcaatctgcatgcatggtcaaaggttttgtgttccctaaaaataatattaacaacaaatgtataacaatcatgttcaaattataaggccttgaacgtattatcatgtagcagtaaattgcagaagctttgaatatatcactggactagaatatgcatgtctccatttcataatatgcaggatataaattagcgctgcagttaataaagtaattagctagtcaagttacccgcagaaattgtgagctagctatcagaaacatttgtgatgttggatactgatatgtgtttgaatttgaagataacttaatgggagatgttttgctttttatgaatttattgcttttcttatcaactctaaagtctttcattgaatttagcatgaaaataataaaataataggagtatatctttaacctaaccaacagatccagacctttgtattaggaggaccgagattaaggcatgatgttttgtttttatgtgagaaggtcttgtataatacataaatattttctctgacctattttgacctctctaactagggcacataacacattgggattaagtgccaatttttattgttttttttgtgaattctagaatttctttcctttttttccttatcaactactactagtaaaggttaatgtctgtactggcaaactctaccaccaggacctggctgaaagtgaatgccaagcaataagtaattttggattatgaaacttaactttgcggatcttcgatgtaaatcattatcatggatgaactgcgactgcctgacaacttcttcagtgaactgatatttctctctgtacaaccgaacagtttctgcgtgggcaagtagttggtgatggcatgcagtgtaaggctcccttcctgaatctccaacgctgcattttcccatctcccagggtgaacaccggcccggggcataggtgccagatgcataggccttagagcagaagatccaaggctcattgaaggtgatccaatgtttcactcggtcaccaaactctttgaagcagatttcagcatagtccttatagtcatttctgcaatagttcttcacagtcagtaactttagcacttttttcatggcaaataacactaggatgttttagctgaaaatactatatgaagggaacactaatgtggatggtgtcgatgcaacaagggttaaatcttgtccttcaacaaatcacagtaaacaatattcacaagaaaatggggaagggaactccaaaggcttttggcattgaaatattgggtattttaattgatatgcatgatgacgtggacaatatttttctgaagtatataacatggtccctagtatttatggaaaacattattcagctgtagacactctcctatcttactgggttgtgtttactaaccaggtcagaccccaatttaacttttccagatttaacttgtaatatatttaagtagcaaatggtactgaagaattgttgacttacatgatattagggctaagaaatccgttgtatttatcttccagtgcctgaggtgtgtcataatggaaaagggtaacaaatgattggacccctgcaaatgtattaagattattttgcattttggaaaaggaaatctggcataccaagggatggagctaatggtttccacaagttgcatctagccactgaacttgaaactaaacagtgaagattagacatgcatgcctttcaataatagctcattgatcaaattgttgtagtagttgatgccttctatgttgactccgccattcagacttccatctgccatgacagtgagattttaattccttgtgggatcaccttggagattgaaaaagatatgcaaaatattgtacttcgaagaaaaatgagaacatcttcagataagctatatatttgttatgcgtgacagtgcattatagtatatattaggtgtatcacgcacttggaagaattcttgaccatgagatggaaaacctgtatgcatccattcccatctccttcatcatgtgcacatcttcctgcattttttcaggatgtgagtactgaactagtccttccagtgaaacttagaattgatctctgaagcgatggcgccataggcagactgacatgtggtatatcttttatctgtagaaacaaagaaactaacagaaacatggagtgcatatttattgaaagtccttacaaaatgcctgttaaaaaatgcccaggacggctacttaaaaatggtaattgctaataccttgtagagatggtaggtgttgtcagccacatccccgttgcttttgtcagcgattttatctgccatattagataatggtcaattcaaaataatgccttattgctttttcattcttgtcatttacagttaaacatgcctggatgctgatatgtgaaggtgtcccagatgcttgatcctctgcccccctctgctgctccaccctcgcactgcatgtgtgaagcaacggccgattcttcaggtttcagacccgaaacagttaattgaccactgaatgcttattggatgtttagtttttttttgctggaatgaccgaaggaggtcattcaatgtaattaagataagaagaaaaggttacaagaaaagttttacatcgacagctggctgtcgaggaaggatgtgcaccagagtacacgccctgaaccatgtgccaaccgcccaaacacacgctacagagagggaagccaagcaccgaaccggccatcgctatgtgagaccgatcgccactggaccaacaacaccatgacgacacgaagactctaaaacgaagccctcacgagggtcacgacgccgaaagacgccgtcatcatccgtccaaagaactggacaatgttttcacccagagctccttaggagggatacctcaacaatgccctcaggagggttaccacgcccgaagacgtagtcactgttggcccaaagaattgggctaagctttcgctcggaaaccccctaccgctgtggtccgttgcccaatccgaatccaccatctaaacatcggtggcacatggcttccgccaacgaaccaccatccctgagagctggcccaggacccctctgttccaccacccgccagcctccttgctagatctggccgaaggagaacccgggactgggtgccatagtttcggcaacctgagcttCccccgctgacaagctgccgcctcaatccaacctagaaactccccgcaaagaaggggaggagctccagaaagggcgagggtgccgaccggtaacgaggaagacgatccaccactgccagctccctttgcactgccttctaggcctacgccgacgccagtgaagCTActacccctccggctccggcgccctcgttgcccggccgccgcgccccatctggccacgccacgccgcccacccggccgcagggcatcgcggcggcaccccggcagccgaggactggccgcgccatggggctgctcgcggccgcacagccgagccgcggcacgccgccgccgcgcccgggcagccgcaccagcgccacgctgccgcccgctcccaacccgtagctccgggccggccacgccgccgccgttcctagccgccgagccgccaccgctcgcaccgtctccgcacccgggcaggctacgccgccgctgttcccaactgccgagccgctgccgctcgcgccgtcccgcgcccgggcacgccacgccgctgccgagccgccgccgcagctcgcgccgtattcacgcccaggcaggccgcacgccgccgagccacctcacgccgccaacacgcccaggccggccagcagcctcgcgccgacgcgccggagcagctgctccggccagatccaggcgtcggagggccaaatccggcctcaaagaagccggatccaccgcctctccaagtagccccaccgtcttcgcctctggccgcggcggagagcttcgtcgttcccctgtcctcgtcgcgccgaggtggaggccatcgagttgatgtgcctcgccgccgccttccctgctcgctggcagctttcccgccggcgagctccggcggcggcgaggtggaggaggcggagtggcggcgcgggtagctagggttttcgcccccgagccgcccgcgcgagagcgacgcggaggtttttctagatgtttagatttcgccttgaattcctagccacatgcaaattcgagaaccattttcggagtaatttgagcattatttgcacagttcatcttaagctgctccttttttttcatgtgttacttgtgtatagtctgttccagcttttttttctttcttccttttgaaaagaacagtctgttccaaccgatgttcttgcaagaattcagttaaggcggcagtcttatcaaattgttcttgatctcttgtaggaagaatgatgcggaagggaagcctaacctgataggacgcggaggacgtcccgaagatgaaccccttggggaagcttctccggctaatcggcggcagctcgccggcttcgacgcaggcggcagctaggaggaggaggaggaggaggagaataccgccggacatcgccactgccccggcaaccgccatctgaacgaagcttgacctgcaattctgcaaaagaaagagt
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| CDS seq | atggcgcggccagtcctcggctgccggggtgccgccgcgatgccctgcggccgggtgggcggcgtggcgtggccagatggggcgcggcggccgggcaacgagggcgccggagccggagggtgcgagggtggagcagcagaggggggcagaggatcaagcatctgggacaccttcacatatcagcatccaggcatgtttaactataaaatcgctgacaaaagcaacggggatgtggctgacaacacctaccatctctacaagatttccttttccaaaatgcaaaataatcttaatacatttgcaggggtccaatcatttgttacccttttccattatgacacacctcaggcactggaagataaatacaacggatttcttagccctaatatcataaatgactataaggactatgctgaaatctgcttcaaagagtttggtgaccgagtgaaacattggatcaccttcaatgagccttggatcttctgctctaaggcctatgcatctggcacctatgccccgggccggtgttcaccctgggagatgggaaaatgcagcgttggagattcaggaagggagccttacactgcatgccatcaccaactacttgcccacgcagaaactgttcggttgtacagagagaaatatcagttcactgaagaagttgtcaggcagtcgcagttcatccatgataatgatttacatcgaagatccgcaaagttaagtttcataatccaaaattacttattgcttggcattcactttcagccaggtcctggtggtagagtttgccagtacagacattaa
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| Protein seq | MARPVLGCRGAAAMPCGRVGGVAWPDGARRPGNEGAGAGGCEGGAAEGGRGSSIWDTFTYQHPGMFNYKIADKSNGDVADNTYHLYKISFSKMQNNLNTFAGVQSFVTLFHYDTPQALEDKYNGFLSPNIINDYKDYAEICFKEFGDRVKHWITFNEPWIFCSKAYASGTYAPGRCSPWEMGKCSVGDSGREPYTACHHQLLAHAETVRLYREKYQFTEEVVRQSQFIHDNDLHRRSAKLSFIIQNYLLLGIHFQPGPGGRVCQYRH |
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| Function | Putative beta-glucosidase 9 [UniProtKB/Swiss-Prot:B7ECS8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0016640 | OsLima_04g0016640.04 | Chr04 | 25133426 | 25134615 | - | NAM | ||
| CDS seq | atggtcaagggtgcatttgatttcattggacttaattactactcttcaagctatgccgagaatgttcttccatcgtatggtcttaagaacagctacaataccgatttccacgctaggattaccggtgttgatgaagtcaataacaagaccatgccactcaaggaggccctgaatgataatacgaggatagaatattatcacaagcaccttctcgccctgcgaaatgctatgagggatggagcaaacgtgaaggggtactttgcatggtctctgcttgacaactttgagtgggcggatggctacacactccggtttgggctaaactttgtggattacgatgatgggatgaagagacaccccaagaattcagcccattggttcaagaagttcctccgagaaatgaaacagggatga
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| Protein seq | MVKGAFDFIGLNYYSSSYAENVLPSYGLKNSYNTDFHARITGVDEVNNKTMPLKEALNDNTRIEYYHKHLLALRNAMRDGANVKGYFAWSLLDNFEWADGYTLRFGLNFVDYDDGMKRHPKNSAHWFKKFLREMKQG |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0016640 | OsLima_04g0016640.02 | Chr04 | 25138695 | 25139572 | - | NAM | ||
| CDS seq | atggcggttgccggggcagtggcgatgtccggcggtattctcctcctcctcctcctcctcctagctgccgcctgcgtcgaagccggcgagctgccgccgattagccggagaagcttccccaaggggttcatcttcgggacgtcctccgcgtcctatcaggaattcaaggcgaaatctaaacatctagaaaaacctccgcgtcgctctcgcgcgggcggctcgggggcgaaaaccctagctacccgcgccgccactccgcctcctccacctcgccgccgccggagctcgccggcgggaaagctgccagcgagcagggaaggcggcggcgaggcacatcaactcgatggcctccacctcggcgcgacgaggacaggggaacgacgaagctctccgccgcggccagaggcgaagacggtggggctacttggagaggcggtggatccggcttctttgaggccggatttggccctccgacgcctggatctggccggagcagctgctccggcgcgtcggcgcgaggctgctggccggcctgggcgtgttggcggcgtgaggtggctcggcggcgtgcggcctgcctgggcgtga
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| Protein seq | MAVAGAVAMSGGILLLLLLLLAAACVEAGELPPISRRSFPKGFIFGTSSASYQEFKAKSKHLEKPPRRSRAGGSGAKTLATRAATPPPPPRRRRSSPAGKLPASREGGGEAHQLDGLHLGATRTGERRSSPPRPEAKTVGLLGEAVDPASLRPDLALRRLDLAGAAAPARRREAAGRPGRVGGVRWLGGVRPAWA |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0016640 | OsLima_04g0016640.03 | Chr04 | 25133426 | 25138417 | - | NAM | ||
| CDS seq | atggcgcggccagtcctcggctgccggggtgccgccgcgatgccctgcggccgggtgggcggcgtggcgtggccagatggggcgcggcggccgggcaacgagggcgccggagccggagggtgcgagggtggagcagcagaggggggcagaggatcaagcatctgggacaccttcacatatcagcatccaggcatgtttaactataaaatcgctgacaaaagcaacggggatgtggctgacaacacctaccatctctacaagatttccttttccaaaatgcaaaataatcttaatacatttgcaggggtccaatcatttgttacccttttccattatgacacacctcaggcactggaagataaatacaacggatttcttagccctaatatcataaatgactataaggactatgctgaaatctgcttcaaagagtttggtgaccgagtgaaacattggatcaccttcaatgagccttggatcttctgctctaaggcctatgcatctggcacctatgccccgggccggtgttcaccctgggagatgggaaaatgcagcgttggagattcaggaagggagccttacactgcatgccatcaccaactacttgcccacgcagaaactgttcggttgtacagagagaaatatcagttcactgaagaagttgtcaggcagtcgcagttcatccatgataatgatttacatcgaagatccgcaaagttaagtttcataatccaaaattacttattgcttggcattcactttcagccaggtcctggtggtagagtttgccagtacagacattaa
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| Protein seq | MARPVLGCRGAAAMPCGRVGGVAWPDGARRPGNEGAGAGGCEGGAAEGGRGSSIWDTFTYQHPGMFNYKIADKSNGDVADNTYHLYKISFSKMQNNLNTFAGVQSFVTLFHYDTPQALEDKYNGFLSPNIINDYKDYAEICFKEFGDRVKHWITFNEPWIFCSKAYASGTYAPGRCSPWEMGKCSVGDSGREPYTACHHQLLAHAETVRLYREKYQFTEEVVRQSQFIHDNDLHRRSAKLSFIIQNYLLLGIHFQPGPGGRVCQYRH
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0016640 | OsLima_04g0016640.01 | Chr04 | 25133426 | 25139572 | - | NAM | ||
| CDS seq | atgcaggccttacaaaaggggaagattggaataattgtgaactcacagtggtatgttcccttctcccaatccaaaaccaacaaggatgcagcaagacgtgttctagatttcgtgcttggatggcttatggatcctctcattagaggggactaccccctaaacatgagagaattggttggaaatcgcttgccaaagttcaccaaagagcaatctgaaatggtcaagggtgcatttgatttcattggacttaattactactcttcaagctatgccgagaatgttcttccatcgtatggtcttaagaacagctacaataccgatttccacgctaggattaccggtagtcgaaacggtactctcattggtcctcaggctgcttcatcttggcttcatatataccctcaagggctccgtgaattgttgctttatatcaaggaaaactacggcaatcctaccatctttattactgaaaatggtgttgatgaagtcaataacaagaccatgccactcaaggaggccctgaatgataatacgaggatagaatattatcacaagcaccttctcgccctgcgaaatgctatgagggatggagcaaacgtgaaggggtactttgcatggtctctgcttgacaactttgagtgggcggatggctacacactccggtttgggctaaactttgtggattacgatgatgggatgaagagacaccccaagaattcagcccattggttcaagaagttcctccgagaaatgaaacagggatga
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| Protein seq | MQALQKGKIGIIVNSQWYVPFSQSKTNKDAARRVLDFVLGWLMDPLIRGDYPLNMRELVGNRLPKFTKEQSEMVKGAFDFIGLNYYSSSYAENVLPSYGLKNSYNTDFHARITGSRNGTLIGPQAASSWLHIYPQGLRELLLYIKENYGNPTIFITENGVDEVNNKTMPLKEALNDNTRIEYYHKHLLALRNAMRDGANVKGYFAWSLLDNFEWADGYTLRFGLNFVDYDDGMKRHPKNSAHWFKKFLREMKQG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr04 | 25136445 | 25137266 | - | OsLima_04g0016640.01 | OsLima_04g0016640.03,OsLima_04g0016640.01 | All |
| A5 | Chr04 | 25133852 | 25134492 | - | OsLima_04g0016640.03 | OsLima_04g0016640.03,OsLima_04g0016640.04 | All |
| A5 | Chr04 | 25137266 | 25137344 | - | OsLima_04g0016640.03 | OsLima_04g0016640.03,OsLima_04g0016640.01 | All |
| AF | Chr04 | 25137413 | 25139572 | - | OsLima_04g0016640.03 | OsLima_04g0016640.03,OsLima_04g0016640.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.158292 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0474500 | SBH | 0.241777 | 0.390373 | 2.659999 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g39814 | SBH | 0.474078 | 0.352156 | 0.417975 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0474500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0016860 | SBH | 0.580800 | 1204.014648 | 17.229502 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0017630 | SBH | 0.000000 | 2.980392 | 0.785118 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0017350 | SBH | 0.403977 | 4.460511 | 4.238048 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0017060 | SBH | 0.029187 | 0.036088 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0017290 | RBH | 0.0 | 0.000000 | 0.374052 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0369900 | SBH | 2.020888 | 5.9245855 | 7.5129575 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0016070 | RBH | 0.032007 | 0.000000 | 0.456857 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0368100 | SBH | 1.5054895 | 7.0764065 | 2.467973 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0016500 | RBH | 0.145352 | 2.978193 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0016500 | RBH | 0.913782 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0017010 | RBH | 0.243695 | 0.680139 | 0.089263 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0017090 | SBH | 0.048970 | 2.407362 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G016340 | SBH | 0.170521 | 0.615946 | 1.179078 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0016370 | SBH | 6.220611 | 167.321060 | 29.707485 |
