Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0015940 | OGI:04070630 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:24520443-24523952 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | actttgcaacacttggcaaacaacaaaattttgcaactggtaaacaacAaacgttccatatttcacaggtctctcacgttcaatgaggccagtacactctatatactgctaatgatacacaaacaggcaccaaagaatttaactacggacaacctgcacgtttgcaccagacattaacgcctgagtcacttccagcaaaagaacaatccgacttgtaccgggttcttgggtaatgttgattcattgctcaacttaactgactctgaaacAaaaaaacttgttaagacaaatttgaatacagcctgcagggaaattgtatcctgccaagacaagataactttagcactcaaaagaaaacaaattcttcctcgaaactgggacttggtaggcattgggtcagttctatttctaccatgaattgttctgctccattatttataagattaaatacaacatgatataaacggagagaccattaaaaggaatgatctgttcgggatttcaatcaaacaaaataacttgtagatgatgctcaaatcactaaaagggagcaataacacattgtcggaaatctagtattgcaatgacaacattaataattcagggtagggtcacactgtcacccaacttgggatttaactcagggcagggtaactcacaggttgagaatattatgaaatgtgatattgtgccaatgtgcaaagaaagcactagatttggtattcttgggcacttccccttttttggaagggcttaggccttgtggcacttccatcctagctttaagcttttaacacttctctcaccatacaggcttgagttaactctaaataaagatcttattactagcttaggttcagacatctcagcccgacaatacaactctctaaccagaagccttacaatataatacttacaagtttgagtggtttcattgacaatgctcatggattatgcaaaaaattaagatagggtaggaagaaaactagataggagtacaatgtaatgcatggtaaggtccattactattttacctgtagcagttgcctggcagaactgaaatatattacataaattttaagaactaaaataaggtaaatacagagagcaagacaacacaccttaaccgaaattagagtcaattccttccttgccaaagtcaggatgataaaaccaaccctggcagactattgattaaccacaacatggaaggttaaatccaatgaaatatactaaaaattgaaaaaaaaaattcaaatcttaatggtggaagtggccaggaaaccttctaagagatataattctgaaaacagcttgcaaccgttgtatgttctttaaaatatttagtattaggagtgattgtagggaatatctggtccaattacagggcAAaaccaatataatacagtaacatgaaggTttggtttacaaatgtaaatccactcttagaacaccacacctattgcatttgataaaatggagtacacccacagagcaaataccagcattaaatgttgaagaatatgctttaaaggacaagaaaggattgcataatattttatgagttacttatgatgaacggagtcaaaacatcttaacaaaagtaaaaaaaatatatataaaaattcagaggtaggcaaatattacgcaaagatcaatgtacttcattgctcataaatgggtagataagtagctgcaaaggtcatcttatatagctatcatatatgatatcacaaaacgataaggagtcctctccagcaacatacgcatcacatacaatgcAaacagtctaaaaacagacaccgagtttctggagacgttctatatggatttagcacctatccaatattcacatttctttataccaaaaagggacaacacaagacaaaacgcatatctgacagcaacagcaaaggaccaaattgcgacagagagctattataaaccctggcacaacctagtatcttggacccatgctacaagaccGggatagccgcgcagcaacatattccttcctgcacccagggcagcgtccatcagcttcgaggatcttgttgtggcagaagagacacaggcaaaatttacaaggacaaggacagaagcttgagtctgtcaggtcaagatcctcgcagcatattggacatgtcaaaggcgtAGagaggttggcctgctgtgcagcacccatccagccattcccgatgcttgctgggaagctgacctgcctggagatgctgggtaagctctgtggacggaatatatcatcaggcgcccaagcttttgttctctgaatgggatcttgccttccagtttgattggcaggagctgtacaaacatttggagcagctggtggcgccacatgacctgaactctggtgggaatgacaatcatcaactgtaagcgcatctgcatcagcaacagcttcccagtcatccaagaccccattctcctcttcagggccaccagtatcatcatcctcggcctcgctcacacttctcgaactggaccatacactgctgctgctgctgagattgaggccaccaccattgttgtaatgcttcctgtgcatgccgccaacgctcccagaattgtccgagctagggctgtgcacaggagagtccagatagctgctgcctaactcctgcctggcagcacccctctcctccctgtcctcctctggatcccctcccttcgacctcacatctaagcgacggcgagggagcggagggtgtggcgaaggaacggtcatggacccagcatttggctctgtacctgtcggcgaagtcgatgccttagcctcctttccatccttgactataccaatccaaaaggcaggaggatcagagtttgaacaatcttcaataaaacaccaattcccccacctagaatcatccccaaacccaatacacaaatagataatacggattcctacgctgaaacgtaagagatttaactatgatccgcacagatattccaacttccgcatgcgcatcgcccaacccccaaacctgagaaaacgcccgagcaacaaccccAaaaaaaaaaaaaATCAGACGAACATCCCCACAAGGGAGGCACGAGATCAGACCTTGCGAAAGCCACTGCTCGCGGCGCGCGTCGAGCTTGCACTGCTTCAGCTTCGCCGACGACCGGTTCCCCTGCATACGAAACACGCGGAAACCCCCCCGCAGATCAGCAATCCCGAATCCAACATCGAATCACACAGATCACCCCCCCACCCCCCAAATCCCCGCGCAAAACGAACCCCTTACCCTCTTCTTCTTCGCGTCGCGCGCGGCGGCGGCGGCGGCCGATGCGTCGACGTGGCCCATCTCGCCGGGGAGACCCGTCTACCTCTCACCGGGGCGGCGCGAACAAAAACCCTAAAAAGCGGCGGGGCGAGGAGAGAGAGAGAGAGGAGGCGACGGAGCGAAGAGGTGGGGGTGATGAGACGGATGGCTGGATGGATGGATAGATAACACACGAGGGCGGAGTTAATGGAAATCTTCTCGT
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| CDS seq | ATGGGCCACGTCGACGCATCGGCCGCCGCCGCCGCCGCGCGCGACGCGAAGAAGAAGAGGGGGAACCGGTCGTCGGCGAAGCTGAAGCAGTGCAAGCTCGACGCGCGCCGCGAGCAGTGGCTTTCGCAAGtcaaggatggaaaggaggctaaggcatcgacttcgccgacaggtacagagccaaatgctgggtccatgaccgttccttcgccacaccctccgctccctcgccgtcgcttagatgtgaggtcgaagggaggggatccagaggaggacagggaggagaggggtgctgccaggcaggagttaggcagcagctatctggactctcctgtgcacagccctagctcggacaattctgggagcgttggcggcatgcacaggaagcattacaacaatggtggtggcctcaatctcagcagcagcagcagtgtatggtccagttcgagaagtgtgagcgaggccgaggatgatgatactggtggccctgaagaggagaatggggtcttggatgactgggaagctgttgctgatgcagatgcgcttacagttgatgattgtcattcccaccagagttcaggtcatgtggcgccaccagctgctccaaatgtttgtacagctcctgccaatcaaactggaaggcaagatcccattcagagaacaaaagcttgggcgcctgatgatatattccgtccacagagcttacccagcatctccaggcaggtcagcttcccagcaagcatcgggaatggctggatgggtgctgcacagcaggccaacctctCTacgcctttgacatgtccaatatgctgcgaggatcttgacctgacagactcaagcttctgtccttgtccttgtaaattttgcctgtgtctcttctgccacaacaagatcctcgaagctgatggacgctgccctgggtgcaggaaggaatatgttgctgcgcggctatccCggtcttgtagcatgggtccaagatactag
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| Protein seq | MGHVDASAAAAAARDAKKKRGNRSSAKLKQCKLDARREQWLSQVKDGKEAKASTSPTGTEPNAGSMTVPSPHPPLPRRRLDVRSKGGDPEEDREERGAARQELGSSYLDSPVHSPSSDNSGSVGGMHRKHYNNGGGLNLSSSSSVWSSSRSVSEAEDDDTGGPEEENGVLDDWEAVADADALTVDDCHSHQSSGHVAPPAAPNVCTAPANQTGRQDPIQRTKAWAPDDIFRPQSLPSISRQVSFPASIGNGWMGAAQQANLSTPLTCPICCEDLDLTDSSFCPCPCKFCLCLFCHNKILEADGRCPGCRKEYVAARLSRSCSMGPRY |
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| Function | General negative regulator of transcription subunit 4 [UniProtKB/Swiss-Prot:P34909] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0015940 | OsLima_04g0015940.01 | Chr04 | 24520443 | 24523952 | - | NAM | ||
| CDS seq | ATGGGCCACGTCGACGCATCGGCCGCCGCCGCCGCCGCGCGCGACGCGAAGAAGAAGAGGGGGAACCGGTCGTCGGCGAAGCTGAAGCAGTGCAAGCTCGACGCGCGCCGCGAGCAGTGGCTTTCGCAAGtcaaggatggaaaggaggctaaggcatcgacttcgccgacaggtacagagccaaatgctgggtccatgaccgttccttcgccacaccctccgctccctcgccgtcgcttagatgtgaggtcgaagggaggggatccagaggaggacagggaggagaggggtgctgccaggcaggagttaggcagcagctatctggactctcctgtgcacagccctagctcggacaattctgggagcgttggcggcatgcacaggaagcattacaacaatggtggtggcctcaatctcagcagcagcagcagtgtatggtccagttcgagaagtgtgagcgaggccgaggatgatgatactggtggccctgaagaggagaatggggtcttggatgactgggaagctgttgctgatgcagatgcgcttacagttgatgattgtcattcccaccagagttcaggtcatgtggcgccaccagctgctccaaatgtttgtacagctcctgccaatcaaactggaaggcaagatcccattcagagaacaaaagcttgggcgcctgatgatatattccgtccacagagcttacccagcatctccaggcaggtcagcttcccagcaagcatcgggaatggctggatgggtgctgcacagcaggccaacctctCTacgcctttgacatgtccaatatgctgcgaggatcttgacctgacagactcaagcttctgtccttgtccttgtaaattttgcctgtgtctcttctgccacaacaagatcctcgaagctgatggacgctgccctgggtgcaggaaggaatatgttgctgcgcggctatccCggtcttgtagcatgggtccaagatactag
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| Protein seq | MGHVDASAAAAAARDAKKKRGNRSSAKLKQCKLDARREQWLSQVKDGKEAKASTSPTGTEPNAGSMTVPSPHPPLPRRRLDVRSKGGDPEEDREERGAARQELGSSYLDSPVHSPSSDNSGSVGGMHRKHYNNGGGLNLSSSSSVWSSSRSVSEAEDDDTGGPEEENGVLDDWEAVADADALTVDDCHSHQSSGHVAPPAAPNVCTAPANQTGRQDPIQRTKAWAPDDIFRPQSLPSISRQVSFPASIGNGWMGAAQQANLSTPLTCPICCEDLDLTDSSFCPCPCKFCLCLFCHNKILEADGRCPGCRKEYVAARLSRSCSMGPRY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.163767 | 0.053694 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0463700 | RBH | 1.510115 | 4.305264 | 5.704674 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g38970 | RBH | 0.682815 | 1.936113 | 1.007591 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0463700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0016160 | RBH | 0.083948 | 2.303807 | 2.372444 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0016900 | RBH | 0.168424 | 1.715173 | 1.531190 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0016630 | RBH | 2.264804 | 0.000000 | 3.182544 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0016360 | RBH | 0.187421 | 0.177867 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0016590 | RBH | 2.074856 | 5.374070 | 10.229248 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0361300 | RBH | 6.5122355 | 13.135874 | 21.585671 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0015390 | RBH | 0.233781 | 0.395057 | 0.531641 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0359700 | RBH | 7.2252345 | 17.2668915 | 13.6457415 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0022440 | RBH | 0.726756 | 0.465867 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0015830 | RBH | 0.536868 | 4.472227 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0015800 | RBH | 3.641125 | 11.649158 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0016320 | RBH | 0.693261 | 0.210983 | 0.543969 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0016430 | RBH | 0.396706 | 3.913573 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G015620 | RBH | 0.138808 | 3.084706 | 2.006167 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0015690 | RBH | 0.988843 | 4.355477 | 7.147568 |
