Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0015170 | OGI:04068820 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:23929112-23929678 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tgagagcaaacaccaaccggaaggtgaggttaggtagcagcgaaaggacagcctcactgatccattagttaactagtgtttggtgttggtgaggatatggctttggatgccagggccatgctgctgccggcggcggcggaggtggcgaccgtcgatgtcgtcggcgacggcgaggagaggccgtggtccgggaacggcggcaatggcggcggcggcggtggtgactcatcatcggcgatggtgggcgcggtgtcggtggacttgccgacgatgtggggcgacgagaggaggatgaagcgggagctggtcgcctgggcgaaggccgtggcgtccatggccatcagggagtcatgtaactccagatgaaccgtacctacctaattcctgagccctttctctttcacagagcgagacagatatcgatatgtttttcttcTtttttttttctttttggaagcagctcgtatgagtctgcttcttgatcgattgatcaatcagcttgtacatgcccccTtttttttctcctcgaaaggattaagagaatttaatctgatagtagtactagat
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| CDS seq | atggctttggatgccagggccatgctgctgccggcggcggcggaggtggcgaccgtcgatgtcgtcggcgacggcgaggagaggccgtggtccgggaacggcggcaatggcggcggcggcggtggtgactcatcatcggcgatggtgggcgcggtgtcggtggacttgccgacgatgtggggcgacgagaggaggatgaagcgggagctggtcgcctgggcgaaggccgtggcgtccatggccatcagggagtcatgtaactccagatga |
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| Protein seq | MALDARAMLLPAAAEVATVDVVGDGEERPWSGNGGNGGGGGGDSSSAMVGAVSVDLPTMWGDERRMKRELVAWAKAVASMAIRESCNSR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0015170 | OsLima_04g0015170.01 | Chr04 | 23929112 | 23929678 | + | NAM | ||
| CDS seq | atggctttggatgccagggccatgctgctgccggcggcggcggaggtggcgaccgtcgatgtcgtcggcgacggcgaggagaggccgtggtccgggaacggcggcaatggcggcggcggcggtggtgactcatcatcggcgatggtgggcgcggtgtcggtggacttgccgacgatgtggggcgacgagaggaggatgaagcgggagctggtcgcctgggcgaaggccgtggcgtccatggccatcagggagtcatgtaactccagatga
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| Protein seq | MALDARAMLLPAAAEVATVDVVGDGEERPWSGNGGNGGGGGGDSSSAMVGAVSVDLPTMWGDERRMKRELVAWAKAVASMAIRESCNSR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0451700 | RBH | 0.415210 | 0.0 | 2.029649 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g37880 | RBH | 0.278890 | 0.0 | 0.518941 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0451700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0015210 | RBH | 0.0 | 0.0 | 1.118532 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0016090 | RBH | 0.226570 | 0.0 | 0.514240 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0015810 | RBH | 1.736621 | 7.596123 | 3.376335 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0015400 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0015700 | RBH | 5.214798 | 0.0 | 7.878067 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0351900 | RBH | 3.5218155 | 33.387894 | 0.6880705 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0014560 | RBH | 0.493106 | 0.0 | 0.628107 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0348400 | RBH | 9.2263395 | 19.55285 | 2.4546245 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0014900 | RBH | 0.943779 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0014940 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0015540 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0015680 | RBH | 0.0 | 4.891247 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G014790 | RBH | 0.0 | 0.0 | 1.249579 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0014850 | RBH | 0.000000 | 0.000000 | 0.000000 |
