Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0014560 | OGI:04067670 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:23520678-23521507 | ||||||||
| Gene Symbol | OsCTR1 | ||||||||||
| DNA seq | cgagcatgtcggcgttggcggtgggagacgcggacggcggcgtggtctcgccgggaggagggctgcaggcaagtccgaccgtggtggtcgacggcgacgtcgtcctgtccggcgtcgtcgtcgtcctcgtcgccctcgcgttcgtcttcgtcatgcaccacttcctcgccgcgatgcgccgccgcgacagcgacgcggggtcgtcgtcggcgtcgagtgggcgccagcgcggcggccgtggcgtgatggctggcgtcgtcggcatagatgccgccaaggctggcgggcaaggcggcgttgacccggcggtgctgcgggcgctgccggtgacggtgcacagggcggaggcggcgccgccgctggagtgcgcggtgtgcctcgcggaggtggaggacggcgaggcggcgcggttcctgcccaggtgcggccacggcttccacgccgagtgcgtcgacctgtggctgcgctcCCAccccacctgCccgctctgccgcctcgccgtcgtcgccgacgccgccgccggcgccgcccctcctccgctcgctctccctcctgcgcagccggagccggccaactacgcgagcgcgacgaccaccgcccagctgccgacgaacgtcctgttctggggatcgcagggcgcggtggtgaccaccaccagcagcgccgccgccgccgccgcctcgtcgtccggcggagacgaagcagcagcagcggtgctggtcgtcgtcgaggtcccgggcacgacgacgacgaagccgcagggcgactcggcgagggtgggcgggtcgctcaggaggatgtggagcagaggggctcttcctcgtacgtga
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| CDS seq | atgtcggcgttggcggtgggagacgcggacggcggcgtggtctcgccgggaggagggctgcaggcaagtccgaccgtggtggtcgacggcgacgtcgtcctgtccggcgtcgtcgtcgtcctcgtcgccctcgcgttcgtcttcgtcatgcaccacttcctcgccgcgatgcgccgccgcgacagcgacgcggggtcgtcgtcggcgtcgagtgggcgccagcgcggcggccgtggcgtgatggctggcgtcgtcggcatagatgccgccaaggctggcgggcaaggcggcgttgacccggcggtgctgcgggcgctgccggtgacggtgcacagggcggaggcggcgccgccgctggagtgcgcggtgtgcctcgcggaggtggaggacggcgaggcggcgcggttcctgcccaggtgcggccacggcttccacgccgagtgcgtcgacctgtggctgcgctcCCAccccacctgCccgctctgccgcctcgccgtcgtcgccgacgccgccgccggcgccgcccctcctccgctcgctctccctcctgcgcagccggagccggccaactacgcgagcgcgacgaccaccgcccagctgccgacgaacgtcctgttctggggatcgcagggcgcggtggtgaccaccaccagcagcgccgccgccgccgccgcctcgtcgtccggcggagacgaagcagcagcagcggtgctggtcgtcgtcgaggtcccgggcacgacgacgacgaagccgcagggcgactcggcgagggtgggcgggtcgctcaggaggatgtggagcagaggggctcttcctcgtacgtga
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| Protein seq | MSALAVGDADGGVVSPGGGLQASPTVVVDGDVVLSGVVVVLVALAFVFVMHHFLAAMRRRDSDAGSSSASSGRQRGGRGVMAGVVGIDAAKAGGQGGVDPAVLRALPVTVHRAEAAPPLECAVCLAEVEDGEAARFLPRCGHGFHAECVDLWLRSHPTCPLCRLAVVADAAAGAAPPPLALPPAQPEPANYASATTTAQLPTNVLFWGSQGAVVTTTSSAAAAAASSSGGDEAAAAVLVVVEVPGTTTTKPQGDSARVGGSLRRMWSRGALPRT |
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| Function | RING-H2 finger protein ATL60 [UniProtKB/Swiss-Prot:P0C035] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0014560 | OsLima_04g0014560.01 | Chr04 | 23520678 | 23521507 | + | NAM | ||
| CDS seq | atgtcggcgttggcggtgggagacgcggacggcggcgtggtctcgccgggaggagggctgcaggcaagtccgaccgtggtggtcgacggcgacgtcgtcctgtccggcgtcgtcgtcgtcctcgtcgccctcgcgttcgtcttcgtcatgcaccacttcctcgccgcgatgcgccgccgcgacagcgacgcggggtcgtcgtcggcgtcgagtgggcgccagcgcggcggccgtggcgtgatggctggcgtcgtcggcatagatgccgccaaggctggcgggcaaggcggcgttgacccggcggtgctgcgggcgctgccggtgacggtgcacagggcggaggcggcgccgccgctggagtgcgcggtgtgcctcgcggaggtggaggacggcgaggcggcgcggttcctgcccaggtgcggccacggcttccacgccgagtgcgtcgacctgtggctgcgctcCCAccccacctgCccgctctgccgcctcgccgtcgtcgccgacgccgccgccggcgccgcccctcctccgctcgctctccctcctgcgcagccggagccggccaactacgcgagcgcgacgaccaccgcccagctgccgacgaacgtcctgttctggggatcgcagggcgcggtggtgaccaccaccagcagcgccgccgccgccgccgcctcgtcgtccggcggagacgaagcagcagcagcggtgctggtcgtcgtcgaggtcccgggcacgacgacgacgaagccgcagggcgactcggcgagggtgggcgggtcgctcaggaggatgtggagcagaggggctcttcctcgtacgtga
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| Protein seq | MSALAVGDADGGVVSPGGGLQASPTVVVDGDVVLSGVVVVLVALAFVFVMHHFLAAMRRRDSDAGSSSASSGRQRGGRGVMAGVVGIDAAKAGGQGGVDPAVLRALPVTVHRAEAAPPLECAVCLAEVEDGEAARFLPRCGHGFHAECVDLWLRSHPTCPLCRLAVVADAAAGAAPPPLALPPAQPEPANYASATTTAQLPTNVLFWGSQGAVVTTTSSAAAAAASSSGGDEAAAAVLVVVEVPGTTTTKPQGDSARVGGSLRRMWSRGALPRT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0571800 | SBH | 1.987989 | 1.773666 | 2.697754 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g49550 | SBH | 0.0 | 0.0 | 0.410905 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0571800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0014610 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0015460 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0015190 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0014770 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0015100 | RBH | 0.0 | 3.402066 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0344500 | RBH | 0.0422495 | 0.2930195 | 0.1475965 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0013930 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0341400 | RBH | 0.1377785 | 0.0260265 | 0.794781 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0021330 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0014290 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0014270 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0014910 | RBH | 0.0 | 0.243599 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0015110 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G014180 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0014230 | RBH | 0.0 | 0.0 | 0.0 |
