Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0014040 | OGI:04066720 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:23070241-23076362 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aatataaatgtaaactttagctatattcattgcagtagccagtgcccagtagggagaaatccttacatctgctagggaagcgctaaactaactacatcatccaaacgtcagcttctccaagctagcgaatttacaggccgtatttttatgtactgatatagtacagcataatacaaagtggaggcgacaaccgcctacagatatacagaaattcctctcttgtcaacagcctctttcctcgtggagcctttctatactgtacagtaaaatcagatcggtgtagtaacagagttacgacatgttgctgacatctctaacattatatatctacgatgtcatgggaacaattctcctgctgaacattcatcagcactcatggatgactgacgctcagaacctctttggggagccgtaggggctttggaccttcaactggctgatatcctgccaggtatccgaaatcgtgggaattcgtcttgtctcgttcatcatgtagcttgatagattataggaagtagcaccaTtggaaaatgttgggtgtggtggggatggcaggcagctccagttggattgcttaaactgccgcaatgggcttgagcatggggacaccggtagagacatgtttgttctcacaacggaaataggactgctgtaggataatacataagcatcaacaagttgaaagagagtacaaagtgaggataaatgcaagaatcacagtacctggcGgtgtgtggtgaaggaacggctgtggaaaatccggtaaaatctcttgcactcactcctatatcctttaggggagtgatacttttccttgagaactccctgttggactgcaacaaggatgaagacatgataagcgtcaggactcaggattcaggaaaatagaaaccataaaagaagcaagcaatgccattttcccccttaaaagccaacaatactacatcgaactccattcaaataaagtagcaaaaggggcccttgctccatcagcttacaattttaactagacatactcaaaaggatctttgactaagccagtgcaactgaggaagaatgtaaaagcactggccagaaaacgAaaagaaggctactccctccgCccctaaaatatactccctccgtttcataatgtaagattttctagcattactcatattcatataaatattaatgaatctagacatacgaatatgtctacatttattaacatctatatgaatatgagcaatgctaaaaagtcttacattgtgaaacggaggaggtagcaagttttagctatgaatctggaaaaacacttgtccagattcatagctagaaattgttatattctggggtggaggtggtaccatttattggccaaagtggtttatgcgcatgtaaagtactcaacccagtgtgctgtggctgcttttctcattggactttggaaagggcccatgagaataaaggcctacggaaagctgaattcagaatgataaatataaaagtataccgttgtatgcgtcccatctgctggtgcaaacgcatttctcagtgcaccagatttcgcagctcttactgctggatggtcctgaacaaaagggtgatccatcaactgagttgcagtgaagcgagatgcaggatcacgttttaagcacatctgcaagaagctttttccttcctcagaaaagctgtctgggatttcaggtatctctttactgtttgcgatcttaaatatagcagctacctgcaagatcagattggatcagcttggcattcacaagttacttggaaaactatagctacaaagtgaaagcataccccctcgtatttatgccaaggaggttttgccgttgccatttcaataatagtacatcccaaactccaaatgtcaactggtagatggtaacctctaccgttcattataacctgcatgttacaatcattaggagaattcagaatcatataaagatgatgataaatacggtatataaaggtttactgttagaaaaacaatttacctcaggagccatccagtaaggacttcctttgaaagagcgtatttcagcaaaagatgatatctgtgtcaaacgtaagtaatgaaattaaaggcttaaaagaggaggggtggggggggggggGATACAAGCTACAGTAGTATTGTGTATATTCTCTTGTAGTCGTGAACTAGCAATAATAGACATCAAAAGGACCCGAAAACTTCTGTAGATATATGTGCATGTACTAACGCAAAACACATCAACCAGACAACCATCAAACTTATCATCTGGGAATAGATATCAACTATCTTCAAACTTCCACAGAATCCTTTTCTACTTATGAGTAAGGAGAAGTAAATTAAATGTAGCTTCATGAAGGAAATGGAATTGGAATGTGCTTCTATGCCTTCCCAAaaaaggaaacaacatggatgcttaagaaattaaacccgacagataaattcagcagcatttagaaacaacaaagttatcttttaggaaaacatttctcttttagaattattataagatgcattggcaacatttcaatgttaaaggtattgaaccaaaagggatgttgcgaccaaattttaagacgataagactacatgatgctgcacacacaggtcaggggatggaaaagaaaaaaaaaatgcatacatgcttagccatgccaaagtcagcaagtttgacttcaccattagggccgacaagtatgttagcacctttaatatctctgcgaagagaaacaggatgaagtggttaaggtatttcttttactaccaaaggaatgtaaaacaactgtggataatctgtactacctgtggacagtgttcctcccatgcaagtaggcaagaccagagagaatttgtccagtgtaattacggatcacaggttccttaaaaggaccatactctctaagtaatttatgaattgagcccccagaaacaaactccagataaattgaaagtgcatcatcagtctgcatggaaaaacatacagaattagaaagtataagcaacacaaagtacTttctactttctgaagtgcttcgaacaaaagatgagaactaaacaagaaaaccagagaattttcttctgagagggaaaataaagaagtaaaaaatgcaaaccaagtgagaggaaataacagcaaaaatcttatattagtagcacagcagaagaggtgacaggaaatcgaacaatttaattatctaaattcaaaagatagactAaaaagtaaaaatgaaatgcgttactactcatacataataaacaattaaatgctgatgttttcttcatccttccagacacgcttacacttatacatgtaacaacctcttgcaagtttcattgatcaggatagtgatttgtaaacgcgaaccaaccaaactaaatgctgttaattatctggatctggctctagtcatcacaataatcattttgctttaagacacaggcttttttttgtaatcttcatacgtcagttacatcacaagtcatgcatgtaacagacaacatggtagttaCaaacatgtattgaagttatatatagttgcacagagataaatgcaattgtttatcaagtaaagcttaccatctcacttccatagtactgcacaatgtttgggtgcgaaagttgcctaagcatatctatttcctgttaatgcccgagtgaattaatatgtcagtgagtccattgaacaagagacacaaatgctgttactactcatcaaaagatattcatactgattaaactgagaaataacctgattcaattgcttgagtcgttcttttgaatgtggatcatccgaaataacttggacctccttaatcgcacagaactgcccattttcactgcatgattcatcataaactaagaatgctaccacaaattgctattggacaaatttaggtaataccacaacctcacagaatataccaaattcttgtacaaattgctgtacatatcaagaccttggcaccATaaaattcagcaaaataactgatgccacttaatctcactgttgagttcattaccccaaataatggaatatgaaaatttatcatatactccgcgagggattattgctttcaatgcggaatcaatgcatcatatacaaaattgtaataccaaaatacaataatgccaaactatagaaagattccaatacctgttaaatccaaggtaaacctggccaaatgtaccgctccctaacaatttgccttttttccattgtgattcggattgcaagcaagtagtgggacctagagggtgaggcgagtaagcagtgggagatgggggaagaggtgaacaagtagcaggacctggaggaagaggtaaaggatgaggtgggctcttcaatccatccatcaTttttactggtgaccttggactaaaaccaaattcccttgaatttacattatttacagcaaaagtatggcctttcggtccaggggagaggcttcttgttcttggagcaagaaaatcctcgggcaacattctgccacgtgaactagtttcgctagttgacagatcatcacaatgcaaatgaagttctcccatattagtgacaggaacctcgaagaacttccgatgctcccgtggcatgctataggacatgaaatgattgtcttcatttaggatcttatgtgagtcagatggcatatttcttcccctgacaaaagacgccggatccgtagacctagaaattacaccaagcagccaagaatcatcagatattatatcaacacaaattttgaaatgaaatatataaatactgtaacaatgtgctgtggaacaatacgctaatttaagtacccctaaacataggcacgtcatatgaatttatatacttcaaaaagttctcaaattgtccaactcaaagaagttgtcaaattaagttcagagcataatgattaacgaaaagcactgtacattattgttgagagaacgtcaatgatttagcacaagaaccaaatacacgtttcaacagaatggtgactccagggcaacaaaagaaacaactattcagcctttttaaaattctttgtccaaccattaacacaccttagcgtcccgagtaatcctgtgtgcaatacatatttagcagagaaagaaaaataaatggcttaggattcccgaactggaagtaatctgaaacgaccatgggaaaaggtcaacttgtagagttggtacgaagccacactgttcattcatcacgtccccaactctgcacttgactaggaacacttaaaagcaagtagcaaagccgagtaaagccattcacacgaaattagtggggaaagtaacgcacgaagcctacatgctacgcttatcagatcatgaaattccccaaattttgatcacaatacctatatatctggaattgcacgttgcaccccccgagaaatagaaatcgaacaggctgaggtattccacgatcgcacacttacctacatacttgctgatccgtcgcctcgtccgacgaatcatgcgagcacacgctcaactcctccgacgaggcgtcgccggcgacgccgcccaccacatccccgttctcctcgaaccttacaggagccggctccaactccggctcctgcccctgcccctgCccccccggccccgcgtcacccacgggcacggggagcttgtacccgacctccccgaaCcccccaccacaccgcccgcccccatgccgcggcgcggcggccgacggcgagtcgaggctgcgcgccttctccctcgcccggggggtcaccgagggggaggcggagaggtcaacgaggtcgagcgacttgcgcggggacgacgccgcggaggccgcccctgccccggggggcttCcccacgcccttcgccttcgacctcgacttccgtggccaccacgcgggcatcgcgcgcgcgatcagcagcacgctgcgccggagcaaagcaccacaccacctatcgtCcccctgctgccgccgagctcaggcggcggcggcgGCggcgcggggaagcgaggagagagagagagaggaaggcgcgaggaaggagacgacgcggcggcggcgacgcttttagtcggagaggaggaggaggagatatttttttttccaattattttcttgtctaaaaaacccaagcaaaaaatgcgggg
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| CDS seq | atgcccgcgtggtggccacggaagtcgaggtcgaaggcgaagggcgtgggGaagccccccggggcaggggcggcctccgcggcgtcgtccccgcgcaagtcgctcgacctcgttgacctctccgcctccccctcggtgaccccccgggcgagggagaaggcgcgcagcctcgactcgccgtcggccgccgcgccgcggcatgggggcgggcggtgtggtgggggGttcggggaggtcgggtacaagctccccgtgcccgtgggtgacgcggggccggggggGcaggggcaggggcaggagccggagttggagccggctcctgtaaggttcgaggagaacggggatgtggtgggcggcgtcgccggcgacgcctcgtcggaggagttgagcgtgtgctcgcatgattcgtcggacgaggcgacggatcagcaagtatgtaggtctacggatccggcgtcttttgtcaggggaagaaatatgccatctgactcacataagatcctaaatgaagacaatcatttcatgtcctatagcatgccacgggagcatcggaagttcttcgaggttcctgtcactaatatgggagaacttcatttgcattgtgatgatctgtcaactagcgaaactagttcacgtggcagaatgttgcccgaggattttcttgctccaagaacaagaagcctctcccctggaccgaaaggccatacttttgctgtaaataatgtaaattcaagggaatttggttttagtccaaggtcaccagtaaaaAtgatggatggattgaagagcccacctcatcctttacctcttcctccaggtcctgctacttgttcacctcttcccccatctcccactgcttactcgcctcaccctctaggtcccactacttgcttgcaatccgaatcacaatggaaaaaaggcaaattgttagggagcggtacatttggccaggtttaccttggatttaacagtgaaaatgggcagttctgtgcgattaaggaggtccaagttatttcggatgatccacattcaaaagaacgactcaagcaattgaatcaggaaatagatatgcttaggcaactttcgcacccaaacattgtgcagtactatggaagtgagatgactgatgatgcactttcaatttatctggagtttgtttctgggggctcaattcataaattacttagagagtatggtccttttaaggaacctgtgatccgtaattacactggacaaattctctctggtcttgcctacttgcatgggaggaacactgtccacagagatattaaaggtgctaacatacttgtcggccctaatggtgaagtcaaacttgctgactttggcatggctaagcatatatcatcttttgctgaaatacgctctttcaaaggaagtccttactggatggctcctgaggttataatgaacggtagaggttaccatctaccagttgacatttggagtttgggatgtactattattgaaatggcaacggcaaaacctccttggcataaatacgagggggtagctgctatatttaagatcgcaaacagtaaagagatacctgaaatcccagacagcttttctgaggaaggaaaaagcttcttgcagatgtgcttaaaacgtgatcctgcatctcgcttcactgcaactcagttgatggatcacccttttgttcaggaccatccagcagtaagagctgcgaaatctggtgcactgagaaatgcgtttgcaccagcagatgggacgcatacaacgtccaacagggagttctcaaggaaaagtatcactcccctaaaggatataggagtgagtgcaagagattttaccggattttccacagccgttccttcaccacacacCgccagcagtcctatttccgttgtgagaacaaacatgtctctaccggtgtccccatgctcaagcccattgcggcagtttaagcaatccaactggagctgcctgccatccccaccacacccaacattttccaAtggtgctacttcctataatctatcaagctacatgatgaacgagacaagacgaattcccacgatttcggatacctggcaggatatcagccagttgaaggtccaaagcccctacggctccccaaagaggttctga
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| Protein seq | MPAWWPRKSRSKAKGVGKPPGAGAASAASSPRKSLDLVDLSASPSVTPRAREKARSLDSPSAAAPRHGGGRCGGGFGEVGYKLPVPVGDAGPGGQGQGQEPELEPAPVRFEENGDVVGGVAGDASSEELSVCSHDSSDEATDQQVCRSTDPASFVRGRNMPSDSHKILNEDNHFMSYSMPREHRKFFEVPVTNMGELHLHCDDLSTSETSSRGRMLPEDFLAPRTRSLSPGPKGHTFAVNNVNSREFGFSPRSPVKMMDGLKSPPHPLPLPPGPATCSPLPPSPTAYSPHPLGPTTCLQSESQWKKGKLLGSGTFGQVYLGFNSENGQFCAIKEVQVISDDPHSKERLKQLNQEIDMLRQLSHPNIVQYYGSEMTDDALSIYLEFVSGGSIHKLLREYGPFKEPVIRNYTGQILSGLAYLHGRNTVHRDIKGANILVGPNGEVKLADFGMAKHISSFAEIRSFKGSPYWMAPEVIMNGRGYHLPVDIWSLGCTIIEMATAKPPWHKYEGVAAIFKIANSKEIPEIPDSFSEEGKSFLQMCLKRDPASRFTATQLMDHPFVQDHPAVRAAKSGALRNAFAPADGTHTTSNREFSRKSITPLKDIGVSARDFTGFSTAVPSPHTASSPISVVRTNMSLPVSPCSSPLRQFKQSNWSCLPSPPHPTFSNGATSYNLSSYMMNETRRIPTISDTWQDISQLKVQSPYGSPKRF |
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| Function | Mitogen-activated protein kinase kinase kinase 3 [UniProtKB/Swiss-Prot:F4HRJ4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0014040 | OsLima_04g0014040.03 | Chr04 | 23071674 | 23076362 | - | NAM | ||
| CDS seq | atgcccgcgtggtggccacggaagtcgaggtcgaaggcgaagggcgtgggGaagccccccggggcaggggcggcctccgcggcgtcgtccccgcgcaagtcgctcgacctcgttgacctctccgcctccccctcggtgaccccccgggcgagggagaaggcgcgcagcctcgactcgccgtcggccgccgcgccgcggcatgggggcgggcggtgtggtgggggGttcggggaggtcgggtacaagctccccgtgcccgtgggtgacgcggggccggggggGcaggggcaggggcaggagccggagttggagccggctcctgtaaggttcgaggagaacggggatgtggtgggcggcgtcgccggcgacgcctcgtcggaggagttgagcgtgtgctcgcatgattcgtcggacgaggcgacggatcagcaagtatgtaggtctacggatccggcgtcttttgtcaggggaagaaatatgccatctgactcacataagatcctaaatgaagacaatcatttcatgtcctatagcatgccacgggagcatcggaagttcttcgaggttcctgtcactaatatgggagaacttcatttgcattgtgatgatctgtcaactagcgaaactagttcacgtggcagaatgttgcccgaggattttcttgctccaagaacaagaagcctctcccctggaccgaaaggccatacttttgctgtaaataatgtaaattcaagggaatttggttttagtccaaggtcaccagtaaaaAtgatggatggattgaagagcccacctcatcctttacctcttcctccaggtcctgctacttgttcacctcttcccccatctcccactgcttactcgcctcaccctctaggtcccactacttgcttgcaatccgaatcacaatggaaaaaaggcaaattgttagggagcggtacatttggccaggtttaccttggatttaacagtgaaaatgggcagttctgtgcgattaaggaggtccaagttatttcggatgatccacattcaaaagaacgactcaagcaattgaatcaggaaatagatatgcttaggcaactttcgcacccaaacattgtgcagtactatggaagtgagatgactgatgatgcactttcaatttatctggagtttgtttctgggggctcaattcataaattacttagagagtatggtccttttaaggaacctgtgatccgtaattacactggacaaattctctctggtcttgcctacttgcatgggaggaacactgtccacagagatattaaaggtgctaacatacttgtcggccctaatggtgaagtcaaacttgctgactttggcatggctaagcatatatcatcttttgctgaaatacgctctttcaaaggaagtccttactggatggctcctgaggttataatgaacggtagaggttaccatctaccagttgacatttggagtttgggatgtactattattgaaatggcaacggcaaaacctccttggcataaatacgagggggtagctgctatatttaagatcgcaaacagtaaagagatacctgaaatcccagacagcttttctgaggaaggaaaaagcttcttgcagatgtgcttaaaacgtgatcctgcatctcgcttcactgcaactcagttgatggatcacccttttgttcaggaccatccagcagtaagagctgcgaaatctggtgcactgagaaatgcgtttgcaccagcagatgggacgcatacaacggtatacttttatatttatcattctgaattcagctttccgtag
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| Protein seq | MPAWWPRKSRSKAKGVGKPPGAGAASAASSPRKSLDLVDLSASPSVTPRAREKARSLDSPSAAAPRHGGGRCGGGFGEVGYKLPVPVGDAGPGGQGQGQEPELEPAPVRFEENGDVVGGVAGDASSEELSVCSHDSSDEATDQQVCRSTDPASFVRGRNMPSDSHKILNEDNHFMSYSMPREHRKFFEVPVTNMGELHLHCDDLSTSETSSRGRMLPEDFLAPRTRSLSPGPKGHTFAVNNVNSREFGFSPRSPVKMMDGLKSPPHPLPLPPGPATCSPLPPSPTAYSPHPLGPTTCLQSESQWKKGKLLGSGTFGQVYLGFNSENGQFCAIKEVQVISDDPHSKERLKQLNQEIDMLRQLSHPNIVQYYGSEMTDDALSIYLEFVSGGSIHKLLREYGPFKEPVIRNYTGQILSGLAYLHGRNTVHRDIKGANILVGPNGEVKLADFGMAKHISSFAEIRSFKGSPYWMAPEVIMNGRGYHLPVDIWSLGCTIIEMATAKPPWHKYEGVAAIFKIANSKEIPEIPDSFSEEGKSFLQMCLKRDPASRFTATQLMDHPFVQDHPAVRAAKSGALRNAFAPADGTHTTVYFYIYHSEFSFP
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0014040 | OsLima_04g0014040.02 | Chr04 | 23070241 | 23076362 | - | NAM | ||
| CDS seq | atgcccgcgtggtggccacggaagtcgaggtcgaaggcgaagggcgtgggGaagccccccggggcaggggcggcctccgcggcgtcgtccccgcgcaagtcgctcgacctcgttgacctctccgcctccccctcggtgaccccccgggcgagggagaaggcgcgcagcctcgactcgccgtcggccgccgcgccgcggcatgggggcgggcggtgtggtgggggGttcggggaggtcgggtacaagctccccgtgcccgtgggtgacgcggggccggggggGcaggggcaggggcaggagccggagttggagccggctcctgtaaggttcgaggagaacggggatgtggtgggcggcgtcgccggcgacgcctcgtcggaggagttgagcgtgtgctcgcatgattcgtcggacgaggcgacggatcagcaagtatgtaggtctacggatccggcgtcttttgtcaggggaagaaatatgccatctgactcacataagatcctaaatgaagacaatcatttcatgtcctatagcatgccacgggagcatcggaagttcttcgaggttcctgtcactaatatgggagaacttcatttgcattgtgatgatctgtcaactagcgaaactagttcacgtggcagaatgttgcccgaggattttcttgctccaagaacaagaagcctctcccctggaccgaaaggccatacttttgctgtaaataatgtaaattcaagggaatttggttttagtccaaggtcaccagtaaaaAtgatggatggattgaagagcccacctcatcctttacctcttcctccaggtcctgctacttgttcacctcttcccccatctcccactgcttactcgcctcaccctctaggtcccactacttgcttgcaatccgaatcacaatggaaaaaaggcaaattgttagggagcggtacatttggccaggtttaccttggatttaacagtgaaaatgggcagttctgtgcgattaaggaggtccaagttatttcggatgatccacattcaaaagaacgactcaagcaattgaatcaggaaatagatatgcttaggcaactttcgcacccaaacattgtgcagtactatggaagtgagatgactgatgatgcactttcaatttatctggagtttgtttctgggggctcaattcataaattacttagagagtatggtccttttaaggaacctgtgatccgtaattacactggacaaattctctctggtcttgcctacttgcatgggaggaacactgtccacagagatattaaaggtgctaacatacttgtcggccctaatggtgaagtcaaacttgctgactttggcatggctaagcatatatcatcttttgctgaaatacgctctttcaaaggaagtccttactggatggctcctgaggttataatgaacggtagaggttaccatctaccagttgacatttggagtttgggatgtactattattgaaatggcaacggcaaaacctccttggcataaatacgagggggtagctgctatatttaagatcgcaaacagtaaagagatacctgaaatcccagacagcttttctgaggaaggaaaaagcttcttgcagatgtgcttaaaacgtgatcctgcatctcgcttcactgcaactcagttgatggatcacccttttgttcaggaccatccagcagtaagagctgcgaaatctggtgcactgagaaatgcgtttgcaccagcagatgggacgcatacaacgtccaacagggagttctcaaggaaaagtatcactcccctaaaggatataggagtgagtgcaagagattttaccggattttccacagccgttccttcaccacacacCgccagcagtcctatttccgttgtgagaacaaacatgtctctaccggtgtccccatgctcaagcccattgcggcagtttaagcaatccaactggagctgcctgccatccccaccacacccaacattttccaAtggtgctacttcctataatctatcaagctacatgatgaacgagacaagacgaattcccacgatttcggatacctggcaggatatcagccagttgaaggtccaaagcccctacggctccccaaagaggttctga
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| Protein seq | MPAWWPRKSRSKAKGVGKPPGAGAASAASSPRKSLDLVDLSASPSVTPRAREKARSLDSPSAAAPRHGGGRCGGGFGEVGYKLPVPVGDAGPGGQGQGQEPELEPAPVRFEENGDVVGGVAGDASSEELSVCSHDSSDEATDQQVCRSTDPASFVRGRNMPSDSHKILNEDNHFMSYSMPREHRKFFEVPVTNMGELHLHCDDLSTSETSSRGRMLPEDFLAPRTRSLSPGPKGHTFAVNNVNSREFGFSPRSPVKMMDGLKSPPHPLPLPPGPATCSPLPPSPTAYSPHPLGPTTCLQSESQWKKGKLLGSGTFGQVYLGFNSENGQFCAIKEVQVISDDPHSKERLKQLNQEIDMLRQLSHPNIVQYYGSEMTDDALSIYLEFVSGGSIHKLLREYGPFKEPVIRNYTGQILSGLAYLHGRNTVHRDIKGANILVGPNGEVKLADFGMAKHISSFAEIRSFKGSPYWMAPEVIMNGRGYHLPVDIWSLGCTIIEMATAKPPWHKYEGVAAIFKIANSKEIPEIPDSFSEEGKSFLQMCLKRDPASRFTATQLMDHPFVQDHPAVRAAKSGALRNAFAPADGTHTTSNREFSRKSITPLKDIGVSARDFTGFSTAVPSPHTASSPISVVRTNMSLPVSPCSSPLRQFKQSNWSCLPSPPHPTFSNGATSYNLSSYMMNETRRIPTISDTWQDISQLKVQSPYGSPKRF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0014040 | OsLima_04g0014040.01 | Chr04 | 23070241 | 23076362 | - | NAM | ||
| CDS seq | atgcccgcgtggtggccacggaagtcgaggtcgaaggcgaagggcgtgggGaagccccccggggcaggggcggcctccgcggcgtcgtccccgcgcaagtcgctcgacctcgttgacctctccgcctccccctcggtgaccccccgggcgagggagaaggcgcgcagcctcgactcgccgtcggccgccgcgccgcggcatgggggcgggcggtgtggtgggggGttcggggaggtcgggtacaagctccccgtgcccgtgggtgacgcggggccggggggGcaggggcaggggcaggagccggagttggagccggctcctgtaaggttcgaggagaacggggatgtggtgggcggcgtcgccggcgacgcctcgtcggaggagttgagcgtgtgctcgcatgattcgtcggacgaggcgacggatcagcaagtatgtaggtctacggatccggcgtcttttgtcaggggaagaaatatgccatctgactcacataagatcctaaatgaagacaatcatttcatgtcctatagcatgccacgggagcatcggaagttcttcgaggttcctgtcactaatatgggagaacttcatttgcattgtgatgatctgtcaactagcgaaactagttcacgtggcagaatgttgcccgaggattttcttgctccaagaacaagaagcctctcccctggaccgaaaggccatacttttgctgtaaataatgtaaattcaagggaatttggttttagtccaaggtcaccagtaaaaAtgatggatggattgaagagcccacctcatcctttacctcttcctccaggtcctgctacttgttcacctcttcccccatctcccactgcttactcgcctcaccctctaggtcccactacttgcttgcaatccgaatcacaatggaaaaaaggcaaattgttagggagcggtacatttggccaggtttaccttggatttaacagtgaaaatgggcagttctgtgcgattaaggaggtccaagttatttcggatgatccacattcaaaagaacgactcaagcaattgaatcaggaaatagatatgcttaggcaactttcgcacccaaacattgtgcagtactatggaagtgagatgactgatgatgcactttcaatttatctggagtttgtttctgggggctcaattcataaattacttagagagtatggtccttttaaggaacctgtgatccgtaattacactggacaaattctctctggtcttgcctacttgcatgggaggaacactgtccacagagatattaaaggtgctaacatacttgtcggccctaatggtgaagtcaaacttgctgactttggcatggctaagcatatatcatcttttgctgaaatacgctctttcaaaggaagtccttactggatggctcctgaggttataatgaacggtagaggttaccatctaccagttgacatttggagtttgggatgtactattattgaaatggcaacggcaaaacctccttggcataaatacgagggggtagctgctatatttaagatcgcaaacagtaaagagatacctgaaatcccagacagcttttctgaggaaggaaaaagcttcttgcagatgtgcttaaaacgtgatcctgcatctcgcttcactgcaactcagttgatggatcacccttttgttcaggaccatccagcagtaagagctgcgaaatctggtgcactgagaaatgcgtttgcaccagcagatgggacgcatacaacgtccaacagggagttctcaaggaaaagtatcactcccctaaaggatataggagtgagtgcaagagattttaccggattttccacagccgttccttcaccacacacCgccagtcctatttccgttgtgagaacaaacatgtctctaccggtgtccccatgctcaagcccattgcggcagtttaagcaatccaactggagctgcctgccatccccaccacacccaacattttccaAtggtgctacttcctataatctatcaagctacatgatgaacgagacaagacgaattcccacgatttcggatacctggcaggatatcagccagttgaaggtccaaagcccctacggctccccaaagaggttctga
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| Protein seq | MPAWWPRKSRSKAKGVGKPPGAGAASAASSPRKSLDLVDLSASPSVTPRAREKARSLDSPSAAAPRHGGGRCGGGFGEVGYKLPVPVGDAGPGGQGQGQEPELEPAPVRFEENGDVVGGVAGDASSEELSVCSHDSSDEATDQQVCRSTDPASFVRGRNMPSDSHKILNEDNHFMSYSMPREHRKFFEVPVTNMGELHLHCDDLSTSETSSRGRMLPEDFLAPRTRSLSPGPKGHTFAVNNVNSREFGFSPRSPVKMMDGLKSPPHPLPLPPGPATCSPLPPSPTAYSPHPLGPTTCLQSESQWKKGKLLGSGTFGQVYLGFNSENGQFCAIKEVQVISDDPHSKERLKQLNQEIDMLRQLSHPNIVQYYGSEMTDDALSIYLEFVSGGSIHKLLREYGPFKEPVIRNYTGQILSGLAYLHGRNTVHRDIKGANILVGPNGEVKLADFGMAKHISSFAEIRSFKGSPYWMAPEVIMNGRGYHLPVDIWSLGCTIIEMATAKPPWHKYEGVAAIFKIANSKEIPEIPDSFSEEGKSFLQMCLKRDPASRFTATQLMDHPFVQDHPAVRAAKSGALRNAFAPADGTHTTSNREFSRKSITPLKDIGVSARDFTGFSTAVPSPHTASPISVVRTNMSLPVSPCSSPLRQFKQSNWSCLPSPPHPTFSNGATSYNLSSYMMNETRRIPTISDTWQDISQLKVQSPYGSPKRF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr04 | 23070886 | 23070964 | - | OsLima_04g0014040.02 | OsLima_04g0014040.01,OsLima_04g0014040.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.675465 | 0.471973 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0437600 | RBH | 10.868845 | 24.273117 | 10.915946 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g35700 | RBH | 7.308696 | 7.910039 | 1.737378 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0437600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0014080 | RBH | 2.433296 | 10.474335 | 8.342319 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0014930 | RBH | 1.508680 | 2.547067 | 7.020557 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0014670 | RBH | 4.619674 | 16.656530 | 19.877020 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0014260 | RBH | 1.310580 | 0.326122 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0014580 | RBH | 27.464987 | 15.341488 | 28.641148 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0440400 | SBH | 6.1384685 | 15.6152545 | 36.9242155 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0013500 | RBH | 0.645073 | 0.646650 | 0.974025 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0336900 | RBH | 14.272501 | 42.3294105 | 9.9545955 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0021060 | RBH | 0.480783 | 0.070837 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0013820 | RBH | 3.013586 | 12.983262 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0013790 | RBH | 20.447229 | 24.449310 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0014410 | RBH | 3.313497 | 1.765126 | 2.273582 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0014610 | RBH | 2.278887 | 12.408436 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G013670 | RBH | 3.557104 | 1.753949 | 4.670844 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0013690 | RBH | 8.113715 | 34.153446 | 9.529737 |
