Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0013840 | OGI:04066360 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:22913666-22914860 | ||||||||
| Gene Symbol | OsZHD8 | ||||||||||
| DNA seq | acagatatgacctccattagcttaccacggccgcggtgcggggggcaggagggaagtgggtcattaattaattaacgcggaactgagcgactagcggctaattaatccatgggatattgctagttgaattagagctaattaaaccctagtgattaagtgaactcattagctagctaagctaagctaggctaaggctaagctagtgtgtgccagtgacagtgtgtctggctgtctagctagacgctgatcggtgaaggggagggggaggacacggcggcgcggggcggggagtcgtcggtgtcgtcgtcgtcgccgtcgccgtcgccgctgatgccggtgccgaggccggtgccgaggccgatgccggcgccggggttcatgacgccggcggcggcggcggcggcggaggtcggggaggaggcgagctggttcttgtggttgtgcatccagaccttgaggacgtggcgcttgacgccgatctcgacgcagaagcggtccagggcgccgtcgtcgttgcggttgatgcgccacccttgcttctcggcgaactcccgcatccgctccttctgctccggcgtgaacttggtccggaaccgcttccgcccgaagatgccgccgccgccgctcccgctcccgccggcgctgccggggccgaagtcgtccatccgcgggggcgtctccgagccggcgcggcctgccgccgccgccgccgcgtggtgccacgccgcggcgggcacggcgtggtacggcagcgcgagctgcggcggcggcgccggcgccggcacggacgacgggaggaagccctgcagcgcggcgtggtgcgagtgcggctgcggcggtggcggcgggcggaagaacaccggcccgccgccgatgcccgcggcggcgcggcggtggaagctgcggtggcagccgcacgcggcgcacttgagcgagtcgggcgacgccggcatgtactccccgcacccgtcgaacgcctgcccgcccatcgccgccgcgtggttccgcatgcactccttgtacttccctccacctcctcccccgccggcgctgccgccctcgtagggcaccaggctcaggtgatccatcatgacgatctcactcgctgtcactcccggcgtcggtggcggcggcggcggcggcgtcgctatcggaggagacgaggcgaggcgcggtgtttgttggtgttgatagc
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| CDS seq | atgatggatcacctgagcctggtgccctacgagggcggcagcgccggcgggggaggaggtggagggaagtacaaggagtgcatgcggaaccacgcggcggcgatgggcgggcaggcgttcgacgggtgcggggagtacatgccggcgtcgcccgactcgctcaagtgcgccgcgtgcggctgccaccgcagcttccaccgccgcgccgccgcgggcatcggcggcgggccggtgttcttccgcccgccgccaccgccgcagccgcactcgcaccacgccgcgctgcagggcttcctcccgtcgtccgtgccggcgccggcgccgccgccgcagctcgcgctgccgtaccacgccgtgcccgccgcggcgtggcaccacgcggcggcggcggcggcaggccgcgccggctcggagacgcccccgcggatggacgacttcggccccggcagcgccggcgggagcgggagcggcggcggcggcatcttcgggcggaagcggttccggaccaagttcacgccggagcagaaggagcggatgcgggagttcgccgagaagcaagggtggcgcatcaaccgcaacgacgacggcgccctggaccgcttctgcgtcgagatcggcgtcaagcgccacgtcctcaaggtctggatgcacaaccacaagaaccagctcgcctcctccccgacctccgccgccgccgccgccgccggcgtcatgaaccccggcgccggcatcggcctcggcaccggcctcggcaccggcatcagcggcgacggcgacggcgacgacgacgacaccgacgactccccgccccgcgccgccgtgtcctccccctccccttcaccgatcagcgtctag
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| Protein seq | MMDHLSLVPYEGGSAGGGGGGGKYKECMRNHAAAMGGQAFDGCGEYMPASPDSLKCAACGCHRSFHRRAAAGIGGGPVFFRPPPPPQPHSHHAALQGFLPSSVPAPAPPPQLALPYHAVPAAAWHHAAAAAAGRAGSETPPRMDDFGPGSAGGSGSGGGGIFGRKRFRTKFTPEQKERMREFAEKQGWRINRNDDGALDRFCVEIGVKRHVLKVWMHNHKNQLASSPTSAAAAAAGVMNPGAGIGLGTGLGTGISGDGDGDDDDTDDSPPRAAVSSPSPSPISV |
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| Function | Zinc-finger homeodomain protein 8 [UniProtKB/Swiss-Prot:Q7X7N3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0013840 | OsLima_04g0013840.01 | Chr04 | 22913666 | 22914860 | - | NAM | ||
| CDS seq | atgatggatcacctgagcctggtgccctacgagggcggcagcgccggcgggggaggaggtggagggaagtacaaggagtgcatgcggaaccacgcggcggcgatgggcgggcaggcgttcgacgggtgcggggagtacatgccggcgtcgcccgactcgctcaagtgcgccgcgtgcggctgccaccgcagcttccaccgccgcgccgccgcgggcatcggcggcgggccggtgttcttccgcccgccgccaccgccgcagccgcactcgcaccacgccgcgctgcagggcttcctcccgtcgtccgtgccggcgccggcgccgccgccgcagctcgcgctgccgtaccacgccgtgcccgccgcggcgtggcaccacgcggcggcggcggcggcaggccgcgccggctcggagacgcccccgcggatggacgacttcggccccggcagcgccggcgggagcgggagcggcggcggcggcatcttcgggcggaagcggttccggaccaagttcacgccggagcagaaggagcggatgcgggagttcgccgagaagcaagggtggcgcatcaaccgcaacgacgacggcgccctggaccgcttctgcgtcgagatcggcgtcaagcgccacgtcctcaaggtctggatgcacaaccacaagaaccagctcgcctcctccccgacctccgccgccgccgccgccgccggcgtcatgaaccccggcgccggcatcggcctcggcaccggcctcggcaccggcatcagcggcgacggcgacggcgacgacgacgacaccgacgactccccgccccgcgccgccgtgtcctccccctccccttcaccgatcagcgtctag
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| Protein seq | MMDHLSLVPYEGGSAGGGGGGGKYKECMRNHAAAMGGQAFDGCGEYMPASPDSLKCAACGCHRSFHRRAAAGIGGGPVFFRPPPPPQPHSHHAALQGFLPSSVPAPAPPPQLALPYHAVPAAAWHHAAAAAAGRAGSETPPRMDDFGPGSAGGSGSGGGGIFGRKRFRTKFTPEQKERMREFAEKQGWRINRNDDGALDRFCVEIGVKRHVLKVWMHNHKNQLASSPTSAAAAAAGVMNPGAGIGLGTGLGTGISGDGDGDDDDTDDSPPRAAVSSPSPSPISV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0434500 | RBH | 0.000000 | 0.0 | 0.490721 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g35500 | RBH | 0.000000 | 0.0 | 0.120760 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0434500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0013880 | RBH | 0.0 | 0.0 | 0.530718 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0014730 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0014480 | RBH | 0.0 | 0.0 | 1.313591 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0014060 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0014380 | RBH | 0.0 | 0.0 | 1.787626 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0338200 | RBH | 0.721785 | 0.2460445 | 31.8812725 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0013300 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0335100 | RBH | 0.8499355 | 0.04403 | 71.8708915 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0013620 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0013590 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0014190 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0014410 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G013480 | RBH | 0.0 | 0.0 | 0.829180 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0013490 | RBH | 0.0 | 0.0 | 1.063546 |
