Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0013730 | OGI:04066150 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:22811016-22813064 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | taaacaagtagtaaacatgaattccaactatcaatttcaatcacaataagaaataaaaaaaatatgagttaaaacaactgtgatcacgctgcctggtttctccacagccaggaaagttcatgccatgatattattaacagaaaatagcagtattcctacatcaaacgccatgaaaaggagcttacaacttcaggcaagtgcaaaatggagtaacaagcaataaccaatttaaagttaagtcccaattttaacttcgcggagtgctatagaaagtaagttcattatgtagcacttagagagcttatccggaggcggtcttcttctgctggaaaacaaccgcataaactgggactgcgatgccaatgccaactgctCccagcacggaaagatacaccttcggcttctggtgcttcatcctgtgcaagttgtacatgtgcttggcatggaggtagtagggctcatcatggccatgccctcccatcctcttcacaccagtggcatggaatccacgagaagctgttatatgcacagagaagagaattcagcaatcagaagtgatctaaaatagtagagttcacaatttgatgatacaggaacaagccaaacatctcgaaggcaaatacacatccaaaccaataaCtatatttgaagatactactaaacaataaaaaaagaacaagccaaacatcaaagatatatttgatgatactactaaacattAaaaagaagaacaagccaaacatctgaaacgcaaatacacatccaatccaatagccaacaattccaggtctccactcttcccccatccaagctactttgattatctctaagattcgctagaatgcaccatagatacatatagcatgacaagatggacacgtatttcgacccttggcagaaaaccattagtaatactgctcatcattaacatcacagacaaataaactagttaaaaaacggcagcgagcaggtgactagacattttgtgagaaaaacaggttatttgcacaatactctcctctgcacagatgaaaccagggcaaccaaaacgagaaattggacattctgccattgccaaaactaggttttgccaaaatgccactccgcaaaagggattcgttaaaatgccaatctcaacccgtggctacaagctacaatgctatacgggaccaaattaccctcgttctcctccttgcctgggcatgtggagctgcttgctgttgggtcagtccatggcacggagcagcgaggacgtcgccggcacagcggctttcggcgagcggcggcaccggcaggaggaggcggaggcgaacgcgccgccgccaccgcctgacgtacgcgcgccgccgccgccgccgccgtccgacgcacgtcaccgccgccgcccgacgCacagaatttggacatcagaatttcatcacagttcacaagatggccatccgtttgatcatttcacagtgacggcatatcgcagattcacattccaccggcctacggtcgattcagtcaccacaggctagcccaaaaatcaaccaccaacatggtccatcgcgggattcatccaaacgagaatgatgtagcgattgatctaataaacgcctacgcaaaccaaatcacagcggcccaagatccatcagccctagaaacatttcgatcgccaaacccccgattcgcttttccaggagtcgcggatctaccgtccaacgcatccaaaccaccacccgaacaaagagaaacgggaacatatgcatccatcgaggcgaatcgctcgccgcccggcgccgaaaccctaaccaggccgcctcgcgcggtcaacgcgacgcagctcgaggggattggggaggagaagggaggggtagggagcgcttgcctgtcttggaggcctcagcgccggtGGCgaggaggcggatcccggagcggaggccgcggttgagcgccgtcgccgtcgccatcgCCCcctctctggtttcgctcgtgttctcgccttaggtcgcccccgccgccgccggtctggtggtttgggttggggttgggtgccgcggtttcgct
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| CDS seq | atggcgacggcgacggcgctcaaccgcggcctccgctccgggatccgcctcctcGCCaccggcgctgaggcctccaagacagcttctcgtggattccatgccactggtgtgaagaggatgggagggcatggccatgatgagccctactacctccatgccaagcacatgtacaacttgcacaggatgaagcaccagaagccgaaggtgtatctttccgtgctggGagcagttggcattggcatcgcagtcccagtttatgcggttgttttccagcagaagaagaccgcctccggataa |
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| Protein seq | MATATALNRGLRSGIRLLATGAEASKTASRGFHATGVKRMGGHGHDEPYYLHAKHMYNLHRMKHQKPKVYLSVLGAVGIGIAVPVYAVVFQQKKTASG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0013730 | OsLima_04g0013730.01 | Chr04 | 22811016 | 22813064 | - | NAM | ||
| CDS seq | atggcgacggcgacggcgctcaaccgcggcctccgctccgggatccgcctcctcGCCaccggcgctgaggcctccaagacagcttctcgtggattccatgccactggtgtgaagaggatgggagggcatggccatgatgagccctactacctccatgccaagcacatgtacaacttgcacaggatgaagcaccagaagccgaaggtgtatctttccgtgctggGagcagttggcattggcatcgcagtcccagtttatgcggttgttttccagcagaagaagaccgcctccggataa
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| Protein seq | MATATALNRGLRSGIRLLATGAEASKTASRGFHATGVKRMGGHGHDEPYYLHAKHMYNLHRMKHQKPKVYLSVLGAVGIGIAVPVYAVVFQQKKTASG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.308837 | 3.221677 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0432600 | RBH | 4.920947 | 5.314316 | 48.498051 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g35300 | RBH | 2.773900 | 2.955259 | 10.438637 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0432600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0013770 | SBH | 3.962089 | 197.885071 | 20.479073 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0014610 | RBH | 1.152453 | 52.606052 | 14.087207 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0014370 | RBH | 7.004997 | 252.324646 | 25.449894 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0013940 | RBH | 0.942193 | 8.345804 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0014270 | RBH | 24.092354 | 285.535187 | 85.981483 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0337200 | SBH | 3.446212 | 6.8382955 | 3.7606095 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0013180 | RBH | 1.569921 | 24.499601 | 7.601295 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0333000 | RBH | 66.733383 | 80.6658475 | 102.849495 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0013510 | RBH | 2.855316 | 229.008804 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0013480 | RBH | 13.543978 | 262.797394 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0014050 | RBH | 2.811093 | 20.803377 | 5.099674 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0014290 | RBH | 0.847147 | 93.490608 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G013360 | RBH | 1.755901 | 81.031143 | 25.473179 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0013380 | RBH | 3.946272 | 267.063904 | 59.243919 |
