Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0013300 | OGI:04065010 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:22356777-22358894 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | caacattcgcagcatcagtgtgcgtgacaaattttcaggagctaggtgacatgggcgacttgggcggcggcggcgagacgaaggacgtcatcgacgtggaggcggtggtcgtgggcgccgggatcgccgggctcgccacggcgctggcgctgcggcgggcgggctttgcggcgcgggacggcggcggtggcggtggcgtcgtggtgctggagcggcacgccgagctgcgcgccacgggcgccgcgctcaccgtcttccccaacggctggttcgcgctccgcgcgctcggcatcgcgcacaagctcacccctcgctaccaaccctacgaaacgtacgtatacccaagcgcgcgcacttgaatcgatcgatcgccacgatggaaaacaaaagaaaaagaatcgaatcgaattgctgctgctgctgatgctgatgaacgcgcgcagatccgtggtgaccaacctcgagtccggagcgacgcaggtgtttcggTttggtgggcacaagagcaggtttgaattgatgcaaattaaaacttttttgaattcgtgatttgatcatttgaaccggtcgcgatttggctcgactcgactgaaatttttgaaggagcggcgaggtgagggtgaggccggtgcaccggagggagctgctggaggcgatggcggaggagctgccgccgggcaccatccggttctcgtccaggctcgcctccatcggcaccgagcccgccgccggcggcggcggcggcgaggagctcgctgtcgtggggctcgacgacggcacggtgatccggtccagggtgctggtcgggtgcgacggcgtgcactcggcggtggcgcggtggctgggcatggcggagccggcgagctccggccgctcctgcgtccgcggcctcgccgtgtaCCccggcggccacggcgtgaggaaggagctcaggcagttcctctcccatggcctcagggccggcatggtgcccatcagcgacaccgacatctactggttcgtcgtcaacaacaccgtccccgcaggcaagccagcccaaatgcctcgaataaaaatttgttcaaatttgatgataagtttgttgcaaatgtgcttaattatgaattggaaattttcaggtccatctaaaaagttgttgcaaTttttttaagtggagaacttttaaatctaactatgcttacaatatcatttcactgtaactatactataaatataatataacttttatatatgtatttaaaaaattggacgtgttcggctatgacaattcaaactgattgtgacgtgtaaccaattacatttgtcacaaacggttaaaaccagcacgtccgaacataaccaatatatacaacTttatacgtaagttatataaatattataatatatataaatgtatgtcattacattatattatagatgcactgttaccatactataattatattttaaattacatttaacgttttctacagaaaaaacttgaaactgttttgttagtaatttctaatttatttatttttttttgcagagagagaagctgccggcgatccggagaagatcctacgcgaggtgactgacaacctgggccgccacctgccggaggagttcctggacgtggcccgccactcggacccggacaacctcacgtgggcccctctgctctaccgggccccgtgggccatcctcacgggccgggccgcgcgcgggcccgtcacggtggccggcgacgcgttccaCccgatgacccccgacatggcgcagggcgggtgcgccgcgctggaggacgccatcgtgctcgcccgcgcgctgtcgtctcggtcgccgtcgccgtcgccggccgacggcgtggcggcgtacgtcgcggagcgccgcggccgcgccgcgtggatcgtcgccggcgcgtacctgtcgggctacgtccagcaggggagcaccagcgcccccggcgtgcgcgccgccgccgtcaagctgttccgcgactggatcttctaccgcttcgtcttccccttgctcgccgacaccatgtggttcgactgcggcgacctcgtcgcgcCGccgccgcgcgacggcggcggcgaggaggaagcagctgactgcaagaagagccatgtacactga
More
|
||||||||||
| CDS seq | atgggcgacttgggcggcggcggcgagacgaaggacgtcatcgacgtggaggcggtggtcgtgggcgccgggatcgccgggctcgccacggcgctggcgctgcggcgggcgggctttgcggcgcgggacggcggcggtggcggtggcgtcgtggtgctggagcggcacgccgagctgcgcgccacgggcgccgcgctcaccgtcttccccaacggctggttcgcgctccgcgcgctcggcatcgcgcacaagctcacccctcgctaccaaccctacgaaacatccgtggtgaccaacctcgagtccggagcgacgcaggtgtttcggTttggtgggcacaagagcaggagcggcgaggtgagggtgaggccggtgcaccggagggagctgctggaggcgatggcggaggagctgccgccgggcaccatccggttctcgtccaggctcgcctccatcggcaccgagcccgccgccggcggcggcggcggcgaggagctcgctgtcgtggggctcgacgacggcacggtgatccggtccagggtgctggtcgggtgcgacggcgtgcactcggcggtggcgcggtggctgggcatggcggagccggcgagctccggccgctcctgcgtccgcggcctcgccgtgtaCCccggcggccacggcgtgaggaaggagctcaggcagttcctctcccatggcctcagggccggcatggtgcccatcagcgacaccgacatctactggttcgtcgtcaacaacaccatcctacgcgaggtgactgacaacctgggccgccacctgccggaggagttcctggacgtggcccgccactcggacccggacaacctcacgtgggcccctctgctctaccgggccccgtgggccatcctcacgggccgggccgcgcgcgggcccgtcacggtggccggcgacgcgttccaCccgatgacccccgacatggcgcagggcgggtgcgccgcgctggaggacgccatcgtgctcgcccgcgcgctgtcgtctcggtcgccgtcgccgtcgccggccgacggcgtggcggcgtacgtcgcggagcgccgcggccgcgccgcgtggatcgtcgccggcgcgtacctgtcgggctacgtccagcaggggagcaccagcgcccccggcgtgcgcgccgccgccgtcaagctgttccgcgactggatcttctaccgcttcgtcttccccttgctcgccgacaccatgtggttcgactgcggcgacctcgtcgcgcCGccgccgcgcgacggcggcggcgaggaggaagcagctgactgcaagaagagccatgtacactga
More
|
||||||||||
| Protein seq | MGDLGGGGETKDVIDVEAVVVGAGIAGLATALALRRAGFAARDGGGGGGVVVLERHAELRATGAALTVFPNGWFALRALGIAHKLTPRYQPYETSVVTNLESGATQVFRFGGHKSRSGEVRVRPVHRRELLEAMAEELPPGTIRFSSRLASIGTEPAAGGGGGEELAVVGLDDGTVIRSRVLVGCDGVHSAVARWLGMAEPASSGRSCVRGLAVYPGGHGVRKELRQFLSHGLRAGMVPISDTDIYWFVVNNTILREVTDNLGRHLPEEFLDVARHSDPDNLTWAPLLYRAPWAILTGRAARGPVTVAGDAFHPMTPDMAQGGCAALEDAIVLARALSSRSPSPSPADGVAAYVAERRGRAAWIVAGAYLSGYVQQGSTSAPGVRAAAVKLFRDWIFYRFVFPLLADTMWFDCGDLVAPPPRDGGGEEEAADCKKSHVH |
||||||||||
| Function | Monooxygenase 3 [UniProtKB/Swiss-Prot:Q9FLC2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0013300 | OsLima_04g0013300.01 | Chr04 | 22356777 | 22358894 | + | NAM | ||
| CDS seq | atgggcgacttgggcggcggcggcgagacgaaggacgtcatcgacgtggaggcggtggtcgtgggcgccgggatcgccgggctcgccacggcgctggcgctgcggcgggcgggctttgcggcgcgggacggcggcggtggcggtggcgtcgtggtgctggagcggcacgccgagctgcgcgccacgggcgccgcgctcaccgtcttccccaacggctggttcgcgctccgcgcgctcggcatcgcgcacaagctcacccctcgctaccaaccctacgaaacatccgtggtgaccaacctcgagtccggagcgacgcaggtgtttcggTttggtgggcacaagagcaggagcggcgaggtgagggtgaggccggtgcaccggagggagctgctggaggcgatggcggaggagctgccgccgggcaccatccggttctcgtccaggctcgcctccatcggcaccgagcccgccgccggcggcggcggcggcgaggagctcgctgtcgtggggctcgacgacggcacggtgatccggtccagggtgctggtcgggtgcgacggcgtgcactcggcggtggcgcggtggctgggcatggcggagccggcgagctccggccgctcctgcgtccgcggcctcgccgtgtaCCccggcggccacggcgtgaggaaggagctcaggcagttcctctcccatggcctcagggccggcatggtgcccatcagcgacaccgacatctactggttcgtcgtcaacaacaccatcctacgcgaggtgactgacaacctgggccgccacctgccggaggagttcctggacgtggcccgccactcggacccggacaacctcacgtgggcccctctgctctaccgggccccgtgggccatcctcacgggccgggccgcgcgcgggcccgtcacggtggccggcgacgcgttccaCccgatgacccccgacatggcgcagggcgggtgcgccgcgctggaggacgccatcgtgctcgcccgcgcgctgtcgtctcggtcgccgtcgccgtcgccggccgacggcgtggcggcgtacgtcgcggagcgccgcggccgcgccgcgtggatcgtcgccggcgcgtacctgtcgggctacgtccagcaggggagcaccagcgcccccggcgtgcgcgccgccgccgtcaagctgttccgcgactggatcttctaccgcttcgtcttccccttgctcgccgacaccatgtggttcgactgcggcgacctcgtcgcgcCGccgccgcgcgacggcggcggcgaggaggaagcagctgactgcaagaagagccatgtacactga
More
|
|||||||
| Protein seq | MGDLGGGGETKDVIDVEAVVVGAGIAGLATALALRRAGFAARDGGGGGGVVVLERHAELRATGAALTVFPNGWFALRALGIAHKLTPRYQPYETSVVTNLESGATQVFRFGGHKSRSGEVRVRPVHRRELLEAMAEELPPGTIRFSSRLASIGTEPAAGGGGGEELAVVGLDDGTVIRSRVLVGCDGVHSAVARWLGMAEPASSGRSCVRGLAVYPGGHGVRKELRQFLSHGLRAGMVPISDTDIYWFVVNNTILREVTDNLGRHLPEEFLDVARHSDPDNLTWAPLLYRAPWAILTGRAARGPVTVAGDAFHPMTPDMAQGGCAALEDAIVLARALSSRSPSPSPADGVAAYVAERRGRAAWIVAGAYLSGYVQQGSTSAPGVRAAAVKLFRDWIFYRFVFPLLADTMWFDCGDLVAPPPRDGGGEEEAADCKKSHVH
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0423100 | RBH | 0.131715 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g34580 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0423100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0013280 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0014110 | RBH | 0.183268 | 0.735628 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0013870 | RBH | 1.135270 | 1.208383 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0013480 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0013790 | RBH | 0.000000 | 1.429033 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0331100 | RBH | 2.7346355 | 0.224932 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0012710 | RBH | 0.255657 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0328500 | RBH | 1.633857 | 0.1345915 | 0.0662005 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0021320 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0012950 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0012960 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0013560 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0013710 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G012820 | RBH | 0.000000 | 1.309909 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0012790 | SBH | 0.0 | 0.0 | 0.0 |
