Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0012300 | OGI:04063120 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:21662488-21664381 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gatccatccatcactcgatcgtaacaactttgtagtcacgcgccatgcagccgacgtggctcgccacgatgccggcagcgtcgtcgctggtcgtcggcgtcgcgttcacggccgccgtggccgtggccgtggccgccgccgtggcgaggcgcgcctggaggcacaggggcctccggttgccgcccgggccgccgggttggcccgtcgtcggcaacctcctgcaggtggtgttcgccgggaagccgttcatccactacatccgtgacctgcggcgggagtacgggcccatcgtgaagctgcagatgggggtgcgcacgctggtcgtcatcagcagcgccgagctcgtgcacgaggcgctcgtcgagaagggccgggagttcgcgaccaggccggcggagagccccatccggagcatcttctccagcggcaagttcaccgtcaactcggcggtgtacgggcccgagtggaggtcgctgcggcggaacatggtgtccgggatgctgagcgccgcgcggctcagggagttccgccccgcgaggctgcgcgccatggagcggttcgtggcgcgggtgcgcgccgaggccgcggcgtcgcgcgacggggcgtccgtgtgggtgctccgcaacgtgcggttcgccatgttctgcgtcctcctcgacatgacgttcggcctgctcgacctcgacgaggagctcgtcgtgcgcgtcgacgccgtcatgaagcgcgtggtgctcgccgtggcggcgcgcatcgacgactacctcccgttcctccgccccttcctgtggcggcagcaccgccaggcggtcgcgctccgccgcgagcagatcgacacggtgctcccgctcatcaaccggcgcCGcgccatcgtccgcggcatgcgggccggctcgccgcccgaccccgccgtcgcggcgccgtactcgtacctcgactccctgctcgacctccgcgtcgagggccgcgacgccgtgcccaccgacgaggagctggtcacgctctgcgcggagatgatcaacggcgggaccgacaccacggccaccgccatcgagtgggccatggcgcgcgtcatggacaacccgtccatccaggccaggctccacggcgagatcatgcagcgcgtcggcgacgcccggccggtgGACgacagggacaccgacggcatgccgtacctgcaggccttcgtgaaggagctcctccgcaagcacccgccgacgtacttcgcgctgagccacgccgccgtggagcccgggagcaagctcgccggctacgacgtccccgtcgacgcgaacctggacatcttcctcccgaccatctccgaggaccccaagctgtgggagcggccgacggagttcgacccggacaggttcctcgccggcggcgagacggcggacatcaccgggtcggcgggcgtccggatgatcccgttcagcgccgggcggcggatctgccccggggtgggcatgggcacggcgcacatcgcgctcatggtggcgcggatggtgcaggcgttcgagtggcgcgcccacccgtcgcagccgccgctcgacttcgaggacaaggtggagttcaccgtggtgatgaagcggccgctgctcgccatggtcacacctcggaagctctccttctgacgcgtgcatgcatgcacgcacatacaacgtggcagagcacgtaagacactgagccgtggggcctagctcgctctcctgatggattgtctattaggtcagcacgtgagatataatactactactcgtagctacaaattattggaagtttgctatttcgagtcattgttttaagtgaggtatttcccggtggaaggcttatacttacgtacgcagttatactttccctaatagcgagtacttataatgtataagtaacacttctg
More
|
||||||||||
| CDS seq | atgcagccgacgtggctcgccacgatgccggcagcgtcgtcgctggtcgtcggcgtcgcgttcacggccgccgtggccgtggccgtggccgccgccgtggcgaggcgcgcctggaggcacaggggcctccggttgccgcccgggccgccgggttggcccgtcgtcggcaacctcctgcaggtggtgttcgccgggaagccgttcatccactacatccgtgacctgcggcgggagtacgggcccatcgtgaagctgcagatgggggtgcgcacgctggtcgtcatcagcagcgccgagctcgtgcacgaggcgctcgtcgagaagggccgggagttcgcgaccaggccggcggagagccccatccggagcatcttctccagcggcaagttcaccgtcaactcggcggtgtacgggcccgagtggaggtcgctgcggcggaacatggtgtccgggatgctgagcgccgcgcggctcagggagttccgccccgcgaggctgcgcgccatggagcggttcgtggcgcgggtgcgcgccgaggccgcggcgtcgcgcgacggggcgtccgtgtgggtgctccgcaacgtgcggttcgccatgttctgcgtcctcctcgacatgacgttcggcctgctcgacctcgacgaggagctcgtcgtgcgcgtcgacgccgtcatgaagcgcgtggtgctcgccgtggcggcgcgcatcgacgactacctcccgttcctccgccccttcctgtggcggcagcaccgccaggcggtcgcgctccgccgcgagcagatcgacacggtgctcccgctcatcaaccggcgcCGcgccatcgtccgcggcatgcgggccggctcgccgcccgaccccgccgtcgcggcgccgtactcgtacctcgactccctgctcgacctccgcgtcgagggccgcgacgccgtgcccaccgacgaggagctggtcacgctctgcgcggagatgatcaacggcgggaccgacaccacggccaccgccatcgagtgggccatggcgcgcgtcatggacaacccgtccatccaggccaggctccacggcgagatcatgcagcgcgtcggcgacgcccggccggtgGACgacagggacaccgacggcatgccgtacctgcaggccttcgtgaaggagctcctccgcaagcacccgccgacgtacttcgcgctgagccacgccgccgtggagcccgggagcaagctcgccggctacgacgtccccgtcgacgcgaacctggacatcttcctcccgaccatctccgaggaccccaagctgtgggagcggccgacggagttcgacccggacaggttcctcgccggcggcgagacggcggacatcaccgggtcggcgggcgtccggatgatcccgttcagcgccgggcggcggatctgccccggggtgggcatgggcacggcgcacatcgcgctcatggtggcgcggatggtgcaggcgttcgagtggcgcgcccacccgtcgcagccgccgctcgacttcgaggacaaggtggagttcaccgtggtgatgaagcggccgctgctcgccatggtcacacctcggaagctctccttctga
More
|
||||||||||
| Protein seq | MQPTWLATMPAASSLVVGVAFTAAVAVAVAAAVARRAWRHRGLRLPPGPPGWPVVGNLLQVVFAGKPFIHYIRDLRREYGPIVKLQMGVRTLVVISSAELVHEALVEKGREFATRPAESPIRSIFSSGKFTVNSAVYGPEWRSLRRNMVSGMLSAARLREFRPARLRAMERFVARVRAEAAASRDGASVWVLRNVRFAMFCVLLDMTFGLLDLDEELVVRVDAVMKRVVLAVAARIDDYLPFLRPFLWRQHRQAVALRREQIDTVLPLINRRRAIVRGMRAGSPPDPAVAAPYSYLDSLLDLRVEGRDAVPTDEELVTLCAEMINGGTDTTATAIEWAMARVMDNPSIQARLHGEIMQRVGDARPVDDRDTDGMPYLQAFVKELLRKHPPTYFALSHAAVEPGSKLAGYDVPVDANLDIFLPTISEDPKLWERPTEFDPDRFLAGGETADITGSAGVRMIPFSAGRRICPGVGMGTAHIALMVARMVQAFEWRAHPSQPPLDFEDKVEFTVVMKRPLLAMVTPRKLSF |
||||||||||
| Function | Cytochrome P450 77A3 [UniProtKB/Swiss-Prot:O48928] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0012300 | OsLima_04g0012300.01 | Chr04 | 21662488 | 21664381 | + | NAM | ||
| CDS seq | atgcagccgacgtggctcgccacgatgccggcagcgtcgtcgctggtcgtcggcgtcgcgttcacggccgccgtggccgtggccgtggccgccgccgtggcgaggcgcgcctggaggcacaggggcctccggttgccgcccgggccgccgggttggcccgtcgtcggcaacctcctgcaggtggtgttcgccgggaagccgttcatccactacatccgtgacctgcggcgggagtacgggcccatcgtgaagctgcagatgggggtgcgcacgctggtcgtcatcagcagcgccgagctcgtgcacgaggcgctcgtcgagaagggccgggagttcgcgaccaggccggcggagagccccatccggagcatcttctccagcggcaagttcaccgtcaactcggcggtgtacgggcccgagtggaggtcgctgcggcggaacatggtgtccgggatgctgagcgccgcgcggctcagggagttccgccccgcgaggctgcgcgccatggagcggttcgtggcgcgggtgcgcgccgaggccgcggcgtcgcgcgacggggcgtccgtgtgggtgctccgcaacgtgcggttcgccatgttctgcgtcctcctcgacatgacgttcggcctgctcgacctcgacgaggagctcgtcgtgcgcgtcgacgccgtcatgaagcgcgtggtgctcgccgtggcggcgcgcatcgacgactacctcccgttcctccgccccttcctgtggcggcagcaccgccaggcggtcgcgctccgccgcgagcagatcgacacggtgctcccgctcatcaaccggcgcCGcgccatcgtccgcggcatgcgggccggctcgccgcccgaccccgccgtcgcggcgccgtactcgtacctcgactccctgctcgacctccgcgtcgagggccgcgacgccgtgcccaccgacgaggagctggtcacgctctgcgcggagatgatcaacggcgggaccgacaccacggccaccgccatcgagtgggccatggcgcgcgtcatggacaacccgtccatccaggccaggctccacggcgagatcatgcagcgcgtcggcgacgcccggccggtgGACgacagggacaccgacggcatgccgtacctgcaggccttcgtgaaggagctcctccgcaagcacccgccgacgtacttcgcgctgagccacgccgccgtggagcccgggagcaagctcgccggctacgacgtccccgtcgacgcgaacctggacatcttcctcccgaccatctccgaggaccccaagctgtgggagcggccgacggagttcgacccggacaggttcctcgccggcggcgagacggcggacatcaccgggtcggcgggcgtccggatgatcccgttcagcgccgggcggcggatctgccccggggtgggcatgggcacggcgcacatcgcgctcatggtggcgcggatggtgcaggcgttcgagtggcgcgcccacccgtcgcagccgccgctcgacttcgaggacaaggtggagttcaccgtggtgatgaagcggccgctgctcgccatggtcacacctcggaagctctccttctga
More
|
|||||||
| Protein seq | MQPTWLATMPAASSLVVGVAFTAAVAVAVAAAVARRAWRHRGLRLPPGPPGWPVVGNLLQVVFAGKPFIHYIRDLRREYGPIVKLQMGVRTLVVISSAELVHEALVEKGREFATRPAESPIRSIFSSGKFTVNSAVYGPEWRSLRRNMVSGMLSAARLREFRPARLRAMERFVARVRAEAAASRDGASVWVLRNVRFAMFCVLLDMTFGLLDLDEELVVRVDAVMKRVVLAVAARIDDYLPFLRPFLWRQHRQAVALRREQIDTVLPLINRRRAIVRGMRAGSPPDPAVAAPYSYLDSLLDLRVEGRDAVPTDEELVTLCAEMINGGTDTTATAIEWAMARVMDNPSIQARLHGEIMQRVGDARPVDDRDTDGMPYLQAFVKELLRKHPPTYFALSHAAVEPGSKLAGYDVPVDANLDIFLPTISEDPKLWERPTEFDPDRFLAGGETADITGSAGVRMIPFSAGRRICPGVGMGTAHIALMVARMVQAFEWRAHPSQPPLDFEDKVEFTVVMKRPLLAMVTPRKLSF
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0407900 | RBH | 0.0 | 0.000000 | 3.298674 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g33370 | RBH | 0.0 | 0.084725 | 1.648365 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0407900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0012330 | RBH | 0.0 | 0.0 | 10.471551 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0013150 | RBH | 0.0 | 0.0 | 2.243873 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0012860 | RBH | 0.0 | 0.0 | 8.055923 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0012480 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0012800 | RBH | 0.0 | 0.0 | 5.721939 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0318400 | RBH | 4.084523 | 0.0054215 | 1.65064 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0011710 | RBH | 0.0 | 0.0 | 0.378839 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0249000 | SBH | 0.5051735 | 0 | 0.020085 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0021770 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0011920 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0011950 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0012500 | RBH | 0.0 | 0.0 | 0.732964 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0012730 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G011860 | RBH | 0.0 | 0.0 | 3.957008 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0011870 | RBH | 0.0 | 0.0 | 2.575763 |
