Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0010980 | OGI:04059950 | 4/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:20278675-20280682 | ||||||||
| Gene Symbol | OsFbox204, Os_F0139 | ||||||||||
| DNA seq | atggccatcccgaacgacctgctggtctccgaggtgctgtctcgtctgcccgtcaaatccctcctgcgcttcagctccgtgtgccgctcgtggcgcaccgccgtcgccgaccgtgccttcgcgcgccgccacctcacgctctcccgccgcgccgccggcacgacgccgccatcggtgctcgccgtcgtgacgcgcattgacgccgaCccggacaacgccgcgccgCccgaggacctgatcagcttccaccgcatccacccgggacgacagccttcctccgccgtctccgccgccgccgccgatgtcgccgtcgacgtcgagcagatgcaggagttggctctggagtgctccaaCcccctcctgcgatcctcgcactgcgacggcctcgtcgccgtcgccgccgacgtggggaggatcttcgtgtgcaaCccggccaccagggagttcgtcgtgctgccgccggggagccctggcccctacgaccacaggagggaggaggcggcggtcctcggcgccgacccccgccccggcgtgcacgtggtggccaggtgcttgtaccggcactacggctgccacgccaacgagcacaccggcgagcagtccctcgagtacgacatcgtccacgaggtgttcgtccttggcccctccggctccggcgctgggcggccaccgcggcgccgccgtgCcccgtcgagctcgtggtgccgccggcccacgcgcggggcgcgttctactgggcagccaacgaccagtccgaccaggcccagcgggagcaccccaacgccctcctccgcttcgccatacacgacggggtgttcgacgtcgtccctctcccgccgggcgtcgccttcatggcccccgacgaccgcgacgccctgacggagctcggcggtgagctctgctacatgcgccccaccggcgcgacggcgttcgacttctggatgctcccggccgacgccgacgccgacgccgacgccgagcacgacgaggaggagggcggccacggcgccgggtggtcgctgcggtggcgcttcgactttggcggcggcgaccccatcgacgacctcacgccgctctacatggcacccgatggcacgctgaccgtgtacgtggacacggcgcgtatgatctgccgactggacgagcggagcaacctcctggagaaggtcgtggacatggcagcggtgtactggcatttggtcgaacagttgggccacggaaactattacgatcactccgagaaggattatcgtctggagattcagaacggaagatggaaaagggtacaagatggcgatggtcctgcattgcttagtattcaaagcctcttcacatacgtggaaagtctggtgcagataaactagctagctagctagatcatacttcctctattttttaatagactacgttgttgatatttaaacatacgtctgacaaaTatatatagtagttatacaattataccctgtcattatatatagggaaaaataatttgcaggaggcgtactaaggtcctctttgtttagggtaattataagctggtttataaccgaaaagtcatattatacaaagtcacgtttgtttaggcattctaaataaagattagcttttcatttggttcttttaagccataaaccacttttacaatattaagccaaatgcttagttgaggtagcctttttggcttatataaagtgaagataagattatactataaactaggctttaaaaaaccatcggcttgtaaaccgtataatctgaaaagtcgccttaaacaggtaagtcaataaacctaaacctaaacttagcaaacctaagccaaaatatagaagacaagagtaactaatggtaaaaattacatgcatgtgcaatgcaaacgttttagaggaaagaaaaatattgaaTttgttaacagtgtataTttccaatgatgtttcaaatataatataatataattgaactatatatatttccaatgatgtttcattaacagtgtatattttggtaa
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| CDS seq | atggccatcccgaacgacctgctggtctccgaggtgctgtctcgtctgcccgtcaaatccctcctgcgcttcagctccgtgtgccgctcgtggcgcaccgccgtcgccgaccgtgccttcgcgcgccgccacctcacgctctcccgccgcgccgccggcacgacgccgccatcggtgctcgccgtcgtgacgcgcattgacgccgaCccggacaacgccgcgccgCccgaggacctgatcagcttccaccgcatccacccgggacgacagccttcctccgccgtctccgccgccgccgccgatgtcgccgtcgacgtcgagcagatgcaggagttggctctggagtgctccaaCcccctcctgcgatcctcgcactgcgacggcctcgtcgccgtcgccgccgacgtggggaggatcttcgtgtgcaaCccggccaccagggagttcgtcgtgctgccgccggggagccctggcccctacgaccacaggagggaggaggcggcggtcctcggcgccgacccccgccccggcgtgcacgtggtggccaggtgcttgtaccggcactacggctgccacgccaacgagcacaccggcgagcagtccctcgagtacgacatcgtccacgagctcgtggtgccgccggcccacgcgcggggcgcgttctactgggcagccaacgaccagtccgaccaggcccagcgggagcaccccaacgccctcctccgcttcgccatacacgacggggtgttcgacgtcgtccctctcccgccgggcgtcgccttcatggcccccgacgaccgcgacgccctgacggagctcggcggtgagctctgctacatgcgccccaccggcgcgacggcgttcgacttctggatgctcccggccgacgccgacgccgacgccgacgccgagcacgacgaggaggagggcggccacggcgccgggtggtcgctgcggtggcgcttcgactttggcggcggcgaccccatcgacgacctcacgccgctctacatggcacccgatggcacgctgaccgtgtacgtggacacggcgcgtatgatctgccgactggacgagcggagcaacctcctggagaaggtcgtggacatggcagcggtgtactggcatttggtcgaacagttgggccacggaaactattacgatcactccgagaaggattatcgtctggagattcagaacggaagatggaaaaggtgtatattttggtaa
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| Protein seq | MAIPNDLLVSEVLSRLPVKSLLRFSSVCRSWRTAVADRAFARRHLTLSRRAAGTTPPSVLAVVTRIDADPDNAAPPEDLISFHRIHPGRQPSSAVSAAAADVAVDVEQMQELALECSNPLLRSSHCDGLVAVAADVGRIFVCNPATREFVVLPPGSPGPYDHRREEAAVLGADPRPGVHVVARCLYRHYGCHANEHTGEQSLEYDIVHELVVPPAHARGAFYWAANDQSDQAQREHPNALLRFAIHDGVFDVVPLPPGVAFMAPDDRDALTELGGELCYMRPTGATAFDFWMLPADADADADAEHDEEEGGHGAGWSLRWRFDFGGGDPIDDLTPLYMAPDGTLTVYVDTARMICRLDERSNLLEKVVDMAAVYWHLVEQLGHGNYYDHSEKDYRLEIQNGRWKRCIFW |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0010980 | OsLima_04g0010980.01 | Chr04 | 20278675 | 20280682 | + | NAM | ||
| CDS seq | atggccatcccgaacgacctgctggtctccgaggtgctgtctcgtctgcccgtcaaatccctcctgcgcttcagctccgtgtgccgctcgtggcgcaccgccgtcgccgaccgtgccttcgcgcgccgccacctcacgctctcccgccgcgccgccggcacgacgccgccatcggtgctcgccgtcgtgacgcgcattgacgccgaCccggacaacgccgcgccgCccgaggacctgatcagcttccaccgcatccacccgggacgacagccttcctccgccgtctccgccgccgccgccgatgtcgccgtcgacgtcgagcagatgcaggagttggctctggagtgctccaaCcccctcctgcgatcctcgcactgcgacggcctcgtcgccgtcgccgccgacgtggggaggatcttcgtgtgcaaCccggccaccagggagttcgtcgtgctgccgccggggagccctggcccctacgaccacaggagggaggaggcggcggtcctcggcgccgacccccgccccggcgtgcacgtggtggccaggtgcttgtaccggcactacggctgccacgccaacgagcacaccggcgagcagtccctcgagtacgacatcgtccacgagctcgtggtgccgccggcccacgcgcggggcgcgttctactgggcagccaacgaccagtccgaccaggcccagcgggagcaccccaacgccctcctccgcttcgccatacacgacggggtgttcgacgtcgtccctctcccgccgggcgtcgccttcatggcccccgacgaccgcgacgccctgacggagctcggcggtgagctctgctacatgcgccccaccggcgcgacggcgttcgacttctggatgctcccggccgacgccgacgccgacgccgacgccgagcacgacgaggaggagggcggccacggcgccgggtggtcgctgcggtggcgcttcgactttggcggcggcgaccccatcgacgacctcacgccgctctacatggcacccgatggcacgctgaccgtgtacgtggacacggcgcgtatgatctgccgactggacgagcggagcaacctcctggagaaggtcgtggacatggcagcggtgtactggcatttggtcgaacagttgggccacggaaactattacgatcactccgagaaggattatcgtctggagattcagaacggaagatggaaaaggtgtatattttggtaa
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| Protein seq | MAIPNDLLVSEVLSRLPVKSLLRFSSVCRSWRTAVADRAFARRHLTLSRRAAGTTPPSVLAVVTRIDADPDNAAPPEDLISFHRIHPGRQPSSAVSAAAADVAVDVEQMQELALECSNPLLRSSHCDGLVAVAADVGRIFVCNPATREFVVLPPGSPGPYDHRREEAAVLGADPRPGVHVVARCLYRHYGCHANEHTGEQSLEYDIVHELVVPPAHARGAFYWAANDQSDQAQREHPNALLRFAIHDGVFDVVPLPPGVAFMAPDDRDALTELGGELCYMRPTGATAFDFWMLPADADADADAEHDEEEGGHGAGWSLRWRFDFGGGDPIDDLTPLYMAPDGTLTVYVDTARMICRLDERSNLLEKVVDMAAVYWHLVEQLGHGNYYDHSEKDYRLEIQNGRWKRCIFW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g31540 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0011010 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0011790 | SBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0011500 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0011160 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0011400 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0300300 | SBH | 0.037683 | 0.019212 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0010340 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0297800 | SBH | 0 | 0 | 0.057001 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0010970 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0010570 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0010620 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0011110 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0011270 | SBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G010490 | SBH | 0.000000 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0010560 | SBH | 0.0 | 0.0 | 0.0 |
