Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0009940 | OGI:04056020 | 7/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:18873017-18878352 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctacacctcgaatggccaacgatttgcaaagctgatttcggcctacatgaatcacatttaacactgttaatcactgcattttctatagttagtgacacgctgatagtttatgcgcacatatattgtttcttaccgtgcaagcccactcctccgctgcctccttctccttccttacgctttaccaatctctttgtgctctCGctctgctgcgtcgatgtcatccaacgacaatagtctgtccgaaagtaagataggatccatttctcccggatttcgtacagccgctccattgttcccatgccatgtagttcatatttatcaataaattctgcccccaggccccttcaaactccatcggggtatatgttggtcaatacaaatctccatgtcaccctccaaatcttcatgatgggcgaatataatcgcgagggcatctgcatgtttgtgaagtatgtgccacctgcacaatctatgtatgatgttcttgaaaacaagaggtatggcagttgccattgctacatcctggtctgtaaaaatattttactcatttaccacacaagttcaccataatagtaaagtgcaaatatcattgcatactagtaaccacacaacatcgcactttttgcttaatacattacctattagtatgcatcgtggttccggccaatccgccatgcaagtcttgaaagtattgaacaaccactcgaacgactccttctcatccctaagcaacgcacacccaaacaacgtgttttggagatggtggtttgaacctacaaacattgccaatggcatttcatatatgttttttttgtatattgtatcgaatgtgacaacatccccaaaatctgcatatgccacctggcaacttgcatggctccaaaataaattcttcagaacaccatattcgtcaagctgggcttcccaataaaactgagggttatctttcttgcactccttaaagaattccagtagcttgtttatgtcgtctgcattctcagctctcacattagcggctttcctgtttagtaaccaaattacaaaggacaatttatttcaacacggtgccacgatgtatggatgtttaatgcaattcaatcggcaaatgacatatgcaggatacaaacctattctcaagattgcgtgaagtgaataggatgttctcttgtccaccatgcatgtcagcaagcactccaattaggttgttctgtgccaccctgttttcttgcatggtgttcaaaaactccattatcgtgtcatccctgtgcttatgggatctcatgtgctttatgctcaagcacaacaacatcgtacaaacagacgacacctcaccatcaaccatcacatttttcaccttcatgtatgccttgcaaccagttttctttgtcctatggtttcgctcacgttcagattcatcgcctttatgaaatttatgatgtccctccctggagcaacatatttctcttatagtcttcttagttctgctcttccttacgtcaaacccagcatggtaagcatatttctcatagaaatcatatacactgtcattgtctttgaacaccatattttgcttcggcactatgtcatcatctagcccactacactgcatttagtaaaactattactacccacccgtactgcatgcataaatgccatagagcatagatctactcatccacaaaaatttgtccttacaaacaacatattaactactacttacatcggtgtacaccactggctgtgttggagtagaaatctcatgctcacgcagagatggtggcatatggttcgcatcccgggggcacctgggtggagttcctccttggccatcatccccaactggtacagacgactgcccctcctcacactagctcattgtgtaactacctaacacacactgtggcaatgtagatgccagcagcaattcaccagaacgagcaccgctggagttcatcgctggaggtgtcactatggcacttcaattggtcctcccaccgcatggaaccgcacccctccaaaattgtgaagttgccaaagaataaacccacccacacacagtggcaacaaccgaccagatcgccaacacgaaacaatcttgtcataacttctgtagtaaatcaccataatacgataattcatttaccgatgaaaatgcctacttacaatgtggcagtaacccaattacttcattgtgcgaactacctcatccagaaacaacagtaacacatttacaacaaacttggtcactaactatggcaaacaatttaactaccccgataaatcgattaccatatgactgactgtgaaaaggagcccaattaacccaccaacgtaataagtaatccatttaccaccagaagggaataggacatgtgtcggtaattgagttaggttagaaccccgtttttcggagtaaatcgattactatcgattttttacatgcagcggtaaatcaattacaacaaactcctaattgatttacacgcagaggcatatctttaacaactacccggattcaaatagatctaatctacatggcatgaacgtgggcaaccgaacacggtttttgcggacactgggcttgacatgcggtgctcggaacaatgttccatgcgcaagcgtgcggaatagcgctaccacataatatattgcatttcaataaggaaatttacagaattattgtttacatcttgtaacaaagaaattcataggcatatcttttaaaaagaaaaaagtacacattttcagcagcaagctctgctagataattgtgcaatatatctattcctatatcatcttcgcaaattccttcgctacttccttagatcttgaagtgggattcaagtgtcagaattcagccactgataatttgaatttacataagaaatttattattacacttcacaattgcaatgaaataataattaccatatattacttcaacatataaaatgctactatgaacatacatgaaacaacatagccatattgtccattgtcttgcagtacttcacacgggtcttaccggttatcgttttccttcaaacaatgatttgtaaccactttactaaactagttcaaagacaaacaaaagttgctcacagatctagcattaaagtgaggccaattgccacctgAaaaatatattaggagtactaatgttcatcaagattatcaatcatcctgttaagaatataattatctgatagtttcatcctctatatatctgaaactggggaattctaattggtttttggacagatcattttattactaagcttcatgttctttctcctctgttctgtcaaccaaaaacagagtggcactaacctttgataccattggaaacccagcgtggtagtgtcccagtcatcttaaatatattcttgcaaacctgcttcagaggggaagaaagacgatgtagcaccaaagaatcaaataatgtattgaagcaagaagcattagtatttaagttcatctaaagtaaactatctaacgctatgtttgtggagtgttgactgtacacatcatgctttcatgattcctccaaacgtgcctacacaccacaataatttcctccatactacagtagaacgtctatagtattttattttactgtatcagcaatagtgtaatacaagattttggaaaaacacagtgctcaggactacccaagtgcaatttatcacatagtttgctgttgaaaatggaggaaaatagttcaaatggtacatttcttaacattgaaagctacagttgactgagatatacaaataggatatcactatccgccaccaccatatagaagaataaatgattactactcctacaatggaacgaatacattggctaacatatcaaacattggagccacacaccatagaacaaaaacataatatgctatatatgcactggttatgtcaacagttaaacatcaaatatttttgcaacaagaacttcccaatatgcatgtgagcatgcacttctaaaagatcttactactcttgccaatgacagtacaacttctatcgatcatctatgaaggaaaataaaaagtaattatgaccttttcttatatagcatttctccaataaattggaaaatacccatagaataattatgactaaccagagaaggctacagccataattaccttgcaccaaatgatgtgctctgtgagttcttctcctgtgggtccatctttacaatcttgtgagcagtcacatatagtgatatagagttgctttgtctcattctctacacttaaagctgcagtgttagtttcttgtctcagaacatcattagacaataatatgtctgttttacttaacaagtcatggaagAaaatagatgacatgcagaatagtagcttaagatttcgttcccagaatttaaagatatagcacatgttattttgaactttcatgcacaaaccacaacatgctgatccaaaatattcttcaaagctagtgttttatcaaacaagtcaacatttttttttgcaataagaaatcaactcgtattatattggttttgctctttgggccctctgttgtgacctttaagtaatgatcagacataactctggattttatcgaacaaatcggtccatatatactgcctgcttgtcggagtcaacaacttaatccccttgaaaatactggctagctgcataaaaagctgttctgttgatggtgatcacccaatgcgtgcatgaagctgaaagcaataagcactactaattcacagagttaggtttttttttgtgaatgatcatgttggcaataaggattttgcaatttcacgtgatcagataaagtatggagaggtgtgaagaaaacatcaataatctgtctaaggacaaaattttccttttacggagctggcatgcaactgtacacagtgaagcttttcaaacgcatgatgtgcatatctgtgacaaagaacaagccatccactcttactgaagaagaatttagtcagacagtacataaaccacaaaaagggttcctttgggttcttgtgatgtgctcaccatgcgtacacgagaacgatgcagcaatcatatgtgtctcgactctccagcaatcagatgtgtctcgatcttgcatcctgcaaataccatgaagaaggggatgggtgagacaggctagatagatggccagttctGgggagagccagcgtgtgcggctaagcactttactccttctcccccttcctctgatgccgccggcgtctatagtccctcgacatcgctcacggttcacctgacgagatcaatgtcgctccaccgacgaaaactcccctttctcccctgccacctgccaccgtggggg
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| CDS seq | atgcaagatcgagacacatctgattgctggagagtcgagacacatatgattgctgcatcgttctcgtgtacgcatgaatattttggatcagcatgttgtggtttgtgcatgaaagttcaaaataacatgtgctatatctttaaattctgggaacgaaatcttaagctactattctgcatgtcatctatttTcttccatgacttgttaagtaaaacagacatattattgtctaatgatgttctgagacaagaaactaacactgcagctttaagtgtagagaatgagacaaagcaactctatatcactatatgtgactgctcacaagattgtaaagatggacccacaggagaagaactcacagagcacatcatttggtgcaaggtttgcaagaatatatttaagatgactgggacactaccacgctgggtttccaatggtatcaaagcgctattccgcacgcttgcgcatggaacattgttccgagcaccgcatgtcaagcccagtgtccgcaaaaaccgttgtagtgggctagatgatgacatagtgccgaagcaaaatatggtgttcaaagacaatgacagtgtatatgatttctatgagaaatatgcttaccatgctgggtttgacgtaaggaagagcagaactaagaagactataagagaaatatgttgctccagggagggacatcataaatttcataaaggcgatgaatctgaacgtgagcgaaaccataggacaaagaaaactggttgcaaggcatacatgaaggtgaaaaatgtgatggttgatggtgaggtgtcgtctgccgaaatcagctttgcaaatcgttggccattcgaggtgtag
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| Protein seq | MQDRDTSDCWRVETHMIAASFSCTHEYFGSACCGLCMKVQNNMCYIFKFWERNLKLLFCMSSIFFHDLLSKTDILLSNDVLRQETNTAALSVENETKQLYITICDCSQDCKDGPTGEELTEHIIWCKVCKNIFKMTGTLPRWVSNGIKALFRTLAHGTLFRAPHVKPSVRKNRCSGLDDDIVPKQNMVFKDNDSVYDFYEKYAYHAGFDVRKSRTKKTIREICCSREGHHKFHKGDESERERNHRTKKTGCKAYMKVKNVMVDGEVSSAEISFANRWPFEV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0009940 | OsLima_04g0009940.01 | Chr04 | 18873017 | 18878352 | - | NAM | ||
| CDS seq | atgcaagatcgagacacatctgattgctggagagtcgagacacatatgattgctgcatcgttctcgtgtacgcatgaatattttggatcagcatgttgtggtttgtgcatgaaagttcaaaataacatgtgctatatctttaaattctgggaacgaaatcttaagctactattctgcatgtcatctatttTcttccatgacttgttaagtaaaacagacatattattgtctaatgatgttctgagacaagaaactaacactgcagctttaagtgtagagaatgagacaaagcaactctatatcactatatgtgactgctcacaagattgtaaagatggacccacaggagaagaactcacagagcacatcatttggtgcaaggtttgcaagaatatatttaagatgactgggacactaccacgctgggtttccaatggtatcaaagcgctattccgcacgcttgcgcatggaacattgttccgagcaccgcatgtcaagcccagtgtccgcaaaaaccgttgtagtgggctagatgatgacatagtgccgaagcaaaatatggtgttcaaagacaatgacagtgtatatgatttctatgagaaatatgcttaccatgctgggtttgacgtaaggaagagcagaactaagaagactataagagaaatatgttgctccagggagggacatcataaatttcataaaggcgatgaatctgaacgtgagcgaaaccataggacaaagaaaactggttgcaaggcatacatgaaggtgaaaaatgtgatggttgatggtgaggtgtcgtctgccgaaatcagctttgcaaatcgttggccattcgaggtgtag
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| Protein seq | MQDRDTSDCWRVETHMIAASFSCTHEYFGSACCGLCMKVQNNMCYIFKFWERNLKLLFCMSSIFFHDLLSKTDILLSNDVLRQETNTAALSVENETKQLYITICDCSQDCKDGPTGEELTEHIIWCKVCKNIFKMTGTLPRWVSNGIKALFRTLAHGTLFRAPHVKPSVRKNRCSGLDDDIVPKQNMVFKDNDSVYDFYEKYAYHAGFDVRKSRTKKTIREICCSREGHHKFHKGDESERERNHRTKKTGCKAYMKVKNVMVDGEVSSAEISFANRWPFEV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0123066 | SBH | 0.0 | 0.0 | 0.337787 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g52560 | SBH | 0.778995 | 0.987940 | 0.586479 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0123066 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0014470 | SBH | 0.000000 | 0.0 | 0.243832 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0015320 | SBH | 0.049391 | 0.000000 | 0.703301 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0014630 | SBH | 0.054835 | 0.022603 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0014960 | SBH | 0.402474 | 0.000000 | 5.762455 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0009310 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0496800 | SBH | 2.2105325 | 4.6714685 | 9.468935 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0001380 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0009480 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0009540 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0010040 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0014980 | SBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G014040 | SBH | 0.060278 | 0.000000 | 0.561013 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0009270 | RBH | 0.0 | 0.0 | 0.0 |
