Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0009650 | OGI:04054290 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:18065617-18066626 | ||||||||
| Gene Symbol | OsPUB32, - | ||||||||||
| DNA seq | atgacgcacctgcgcgaggacggcggcgaaggacatcccaagaggaagcgcgagatcacccggcagctagcgccggcggagtgggaggcgacgcccaaccaaacgctgcggcgactcatccaggcgtggtgcgctgcgcacgccgttgagcgattccccaccccgcgcctcattgatggaggacgacgatgcttggcggcggcggcggcggtggcaggcagcggcatcttgccgcgctcagggagatcaaggccattgccgtcgagagcgaccgcaacaagcgctgcatcgaggccacgcccGGTgccgtcaagttcctcgtctcCGTcgtcgtccagagccacgccgccgcctccacctccacgtcggctaggttggacgatgacctgctcgactcgatgatcgattcccccatgtcgacgagctcgccgaagaaggaggcactgggcgtgctctactccctcaagccgtccgagcccaccctgcgccgtatcctcggcaaggacaatggcggcttcctcgacaccctcgcctccgtgctccgacgcccgaactaccgttcgcgcgtgtacgccgtccttctcctaaaggtgatgacatcggcaatgctgccggagcggctaggctgccgcccccgccgtcgcagcatccggggccggacccccttacgcgagcgttccttgaagaagcatgcgagccggacgatgaggcgttcgcggctgcagccgccgctggcgaggagcagaaggatgacgctacCGCGTCCATCTCGCGGCAGCGACCGGCGCGTGAGATTTGGGGTAGAAGACCCCGTGATCCGGCATGCTAGTTGCGGCCACGCCGTTCGGGCGGCCCGGCGTCCTGCCGCTGCAGACGCTCGGCCACCGGCATGCCGTCATCGTCGCCGCCGAACCCACGGACGCTTCGGGAAGCCAGCTACTTCTCGGGCTCCGTCTCGGCAGCTCATCGAGACAGCTCGTCTCGTCCCTCCAGCGAACCGGCAGCAATAG
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| CDS seq | atgacgcacctgcgcgaggacggcggcgaaggacatcccaagaggaagcgcgagatcacccggcagctagcgccggcggagtgggaggcgacgcccaaccaaacgctgcggcgactcatccaggcgtggtgcgctgcgcacgccgttgagcgattccccaccccgcgcctcattgatggaggacgacgatgcttggcggcggcggcggcgcggcatcttgccgcgctcagggagatcaaggccattgccgtcgagagcgaccgcaacaagcgctgcatcgaggccacgcccGGTgccgtcaagttcctcgtctcCGTcgtcgtccagagccacgccgccgcctccacctccacgtcggctaggttggacgatgacctgctcgactcgatgatcgattcccccatgtcgacgagctcgccgaagaaggaggcactgggcgtgctctactccctcaagccgtccgagcccaccctgcgccgtatcctcggcaaggacaatggcggcttcctcgacaccctcgcctccgtgctccgacgcccgaactaccgttcgcgcgtgtacgccgtccttctcctaaaggtgatgacatcggcaatgctgccggagcggctaggctgccgcccccgccgtcgcagcatccggggccggacccccttacgcgagcgttccttgaagaagcatgcgagccggacgatgaggcgttcgcggctgcagccgccgctggcgaggagcagaaggatgacgctacCGCGTCCATCTCGCGGCAGCGACCGGCGCGTGAGATTTGGGGTAGAAGACCCCGTGATCCGGCATGCTAGTTGCGGCCACGCCGTTCGGGCGGCCCGGCGTCCTGCCGCTGCAGACGCTCGGCCACCGGCATGCCGTCATCGTCGCCGCCGAACCCACGGACGCTTCGGGAAGCCAGCTACTTCTCGGGCTCCGTCTCGGCAGCTCATCGAGACAGCTCGTCTCGTCCCTCCAGCGAACCGGCAGCAATAG
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| Protein seq | MTHLREDGGEGHPKRKREITRQLAPAEWEATPNQTLRRLIQAWCAAHAVERFPTPRLIDGGRRCLAAAAARHLAALREIKAIAVESDRNKRCIEATPGAVKFLVSVVVQSHAAASTSTSARLDDDLLDSMIDSPMSTSSPKKEALGVLYSLKPSEPTLRRILGKDNGGFLDTLASVLRRPNYRSRVYAVLLLKVMTSAMLPERLGCRPRRRSIRGRTPLRERSLKKHASRTMRRSRLQPPLARSRRMTLPRPSRGSDRRVRFGVEDPVIRHASCGHAVRAARRPAAADARPPACRHRRRRTHGRFGKPATSRAPSRQLIETARLVPPANRQQ |
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| Function | E3 ubiquitin-protein ligase PUB22 [UniProtKB/Swiss-Prot:Q9SVC6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0009650 | OsLima_04g0009650.01 | Chr04 | 18065617 | 18066626 | + | NAM | ||
| CDS seq | atgacgcacctgcgcgaggacggcggcgaaggacatcccaagaggaagcgcgagatcacccggcagctagcgccggcggagtgggaggcgacgcccaaccaaacgctgcggcgactcatccaggcgtggtgcgctgcgcacgccgttgagcgattccccaccccgcgcctcattgatggaggacgacgatgcttggcggcggcggcggcgcggcatcttgccgcgctcagggagatcaaggccattgccgtcgagagcgaccgcaacaagcgctgcatcgaggccacgcccGGTgccgtcaagttcctcgtctcCGTcgtcgtccagagccacgccgccgcctccacctccacgtcggctaggttggacgatgacctgctcgactcgatgatcgattcccccatgtcgacgagctcgccgaagaaggaggcactgggcgtgctctactccctcaagccgtccgagcccaccctgcgccgtatcctcggcaaggacaatggcggcttcctcgacaccctcgcctccgtgctccgacgcccgaactaccgttcgcgcgtgtacgccgtccttctcctaaaggtgatgacatcggcaatgctgccggagcggctaggctgccgcccccgccgtcgcagcatccggggccggacccccttacgcgagcgttccttgaagaagcatgcgagccggacgatgaggcgttcgcggctgcagccgccgctggcgaggagcagaaggatgacgctacCGCGTCCATCTCGCGGCAGCGACCGGCGCGTGAGATTTGGGGTAGAAGACCCCGTGATCCGGCATGCTAGTTGCGGCCACGCCGTTCGGGCGGCCCGGCGTCCTGCCGCTGCAGACGCTCGGCCACCGGCATGCCGTCATCGTCGCCGCCGAACCCACGGACGCTTCGGGAAGCCAGCTACTTCTCGGGCTCCGTCTCGGCAGCTCATCGAGACAGCTCGTCTCGTCCCTCCAGCGAACCGGCAGCAATAG
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| Protein seq | MTHLREDGGEGHPKRKREITRQLAPAEWEATPNQTLRRLIQAWCAAHAVERFPTPRLIDGGRRCLAAAAARHLAALREIKAIAVESDRNKRCIEATPGAVKFLVSVVVQSHAAASTSTSARLDDDLLDSMIDSPMSTSSPKKEALGVLYSLKPSEPTLRRILGKDNGGFLDTLASVLRRPNYRSRVYAVLLLKVMTSAMLPERLGCRPRRRSIRGRTPLRERSLKKHASRTMRRSRLQPPLARSRRMTLPRPSRGSDRRVRFGVEDPVIRHASCGHAVRAARRPAAADARPPACRHRRRRTHGRFGKPATSRAPSRQLIETARLVPPANRQQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g28880 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0009590 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0010340 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0010150 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0009800 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0009940 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0270600 | RBH | 0.0326825 | 0.089573 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0009060 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0267400 | RBH | 0 | 0.047984 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0009230 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0009290 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0009800 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0009920 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G009040 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0009060 | RBH | 0.0 | 0.0 | 0.0 |
