Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0008920 | OGI:04052800 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:17005966-17010834 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgcagaggagccggcggacgatgctcgcgacggcggaaggaagcgaggaattgagcgcgattctgaggaggtttcgctgggatgcgtacaagccggcggatggcaagcactggtcgttctcctttgttttgcaacgctcgcatgtggtgatactgtagcagttttagaatcatcccgtttttgaacgggattccggtatatagcagccccattttttttccttgtaagaaatacgggtaatcagattgaactagcttagaaattaatctactcgcaaaatggttttcgaaaaaacAaacacaataatataagatgatcactatatatcacataatgatcatccggcacaaatgaatagtgatcgagtatcactatcgcggttaacctttttttttcccgccagaatcgaaatgaaccgacagttataccattttttactgtcagtgatgctgtttctttggtagtgtgactagatcatattaagcagacAaaatctcacttattacaattggtttatcgattaaaattgagagttacaaataaacTttttcttttaatagttatgaccactggaagcggtagaacaagagatgcatcacataagccgcaattcttaagggtacttcgcaattcttaagggtacttctactgggtttcatggagaagatggtgcgcaaacttatcctatttctgccgctttgttttccacctattggtttactttttacattactataattttcaaaatatattttttactgctgatttttattgccaagcatttgaatatcttgatggtaataatactactccctcataagacattttgactttagtcaaagtcaaactattctaagtttgactaattttgtagaaaaaagtagtaatatttttaacccaggactaatatattatgaaaatttattcaattatagaTttaatgaaactatgttggtgttgtaaatattactaTttttttctatatagttagtcaaacttagagtagtttgattttgactaaagtcaaaatgtcttatatcctgaaacggagggagtatgaaagtattttttaagacaaatctAcaaatatgatttctaagtattcaatctaaatatttagaaagataccgatatttaaactttttaagtttgatttttttaaaaaaaatgtccaaacaatatgtataattcgtgatcgtagggtagcactacatgggtattatttttcttgtgtgccaaaaaaaagcatcaaaattaatgcttctgccactactttaattatcaaccatctgttagctactccctccgtttcaggttataaaacattttgactttggtcaaagtcaaactgttttaaatttgactaagtttatagataaatatagtaatatttataatactaattagtttcatcaaatcaataattgaatatattaaatttgtcttgggttgaaaatgttactacttttttctacaaactttaaccaaagtcaaaatatcttataatcagaaacagatggagtaacaaactttatacttttaccattcctctttgcattccatcatggattcatggtgcaattcgcaatagaacacatgtcaaattgtcaatgatacctcacttgaactagacagagctctctccttgaacatgattgctccatgtttatgaaataggttatccctccgtttcacaatgtaagttattctagtattttccacgttcatattgatgttaatgaatctatatagatatatcgctacagtgtgtatatatatatatatatatatatatatatatatatataatatatatatatatatatatatatatatatatatatatattcattaacatcaatatgaatgtgggaaatactagaatgacttacattgtgaaatggagggagtacaaggcaatcttcttgcctttctttcaaccaaaaaaaaagaatttgcctttctctgaatatcagagttgagatgtcagatgtatcatgaactatgcatattgcactgacacattcatatttctaacagaagattcctgctaagtttgtacaacattacattgccgaagagcatctgaacatccacatggctaacattttaagccccctcggcaaattctggcgcattgagctcgagaaggatgaattgggcatgtttttcaaaggaggctggttacagtttctgtcattccatggcttttccccgggtgatgttgtgctcttgaggtatgaaggcaacttggtgttcaaaatcaaagtgtttgggatcaatggatgcaagaatgacttgaagaccaaggacaacaccagaattcagcaaagtgagccatcaaattgagttgctgacatttgaattaatctgtcctaagaacatgtcaccatttaattcatttctgtcttgtctacattctacaggtgctagaaaccaacatgaaataccttctttttctacaaggaaatgtaacaagaacagtagatttggttaagatgataaaaaccaattacaggaaataccttgcagtacaaagggtagcagaaagaaaggcagagAaaaaaaaggctgaaaaaaatccaaatctatctacgagatcggaccgccttcttggataaagaaagagatcaaaaactatatgcttgaaaatggcaatattgtaagtactagtattagttcctcccacacatgatatatatgatgggcatattatgaataagataaaggcaaaattttctatatgacactcaaaaaatgtgtaattagctgtgagacataaaaaaacgtgaatttttctgaggacactttaaaaatatggtaatttgctgcaggacactgaacacattaaaatataatatccattcaattgataagagagaaatcacataaaatgataattttgcccttatcttcctttcccttctttcggtttgttccgagttccgacgctcacttgcagcaagctctatcggcttgcccatggtggataggctcacgcgtagtcgccggcgtggttgtgtggaatgccgccggtaccggcctcgtcccacccccaagctcctcgctgaccgtgcgcgcgcatcgccgagacgttcctgggcggcggagcccccatgggtttcggcgacaaaagcagagctaaaatgtagtcagagagtaaatgatactaatgAACaactagatgaccaaagaatcaaaactatagttgtaaaacagtgggagttgtaaaacgtgctagtttcagagaacataagctaagcttccatagaactcttttacatagtactgatctgtgatcactagtcactacacacaccaagggaaggagagaaagaaagatcagaagcagagacatattgctatgtcgaagagggtaaaattaaaagccgcaaatccaaaagttcagagatttgctgcaagcccgcgagagcagggggtgtctccggctagtagccgccagcggcgttggccgcgagcttgatggacgacggcagcgggctgcgcagcagcgtgcgcagcggtggcggctgctccaggcgcctctttgcgacgtcgtagtagatcatgccggagaaatccagcgattggcaccgctcctccatcagtatctccttcctccacacatcgtccttcacgcggaagcacagctccggcccggccttcctcctcctcgacgacgatgagatagccttcttgccgcctccgccgcctaggaaaaggcacgatggcgcgcgacgagaaggacaccgcgatccccacccgtggctgcaggtgcagctgtcgcgccgcccgtgccgcggcccaagaacccggcggccgcgcccctcctagcctccacctgccctcctgcgtgcggcgcgccggctctaggctccaagcagtagccgtctgctaatgcggtgatggattcggaggaatcaatggaggattgggtagaagaagataagggcaaaaatgtcattttttatggtttctctctcatcaattgggtggatattatattttaatgcgtccaatgttcagcagcaaatttgcatattgttagagtgtcctcagacaaattcacgtttttatggtgtcccacagctaattacgcattttttgagtgttctgtagcaaattttgcctaagataaaaagcctgtttgaaggaagcattctaagaagcagctggtgagaatctgaaaacactaagaaaactagcttatgtctttttctcaaaattagcctttgattccaggagaagctgtagcatacaagcttCcccaaacaggcccaatgcagctccactaagaataagataaatgcatttacacttgctatggagtattcctattgttcaagtagctatactccccatagatatcactcaagctcagccaccactatactaaaattttacacttgcacaagagttattttcattcattacactgcaagaacatgtcatgcatcctagctagatcatgtatagaatcagtattgcattcacatttcacgccactaaaatgaaaaaaaaaaaagttcagctgatcagactaattaaacctgctatatccactgtacatctgcagtctttgccagagatcttctgcaagtcgatcgggctcgtagaagaaagcaccatcactctaatgatgaacaactcgagaggaagaagcagcaacagcagcagcagcagcaggtcatgggaggtggcttgtagcgtaaacaagaacgggtaacggctgctgcaacctgcttccatccggctggaagaggttctgccaggcgaacggtctcctcgtaggcgacgtctgcaccttcagcgtcgtcgaggccaccctgtggcatgttgccatcgatcgagcagtcgagcgtagctga
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| CDS seq | atgcagaggagccggcggacgatgctcgcgacggcggaaggaagcgaggaattgagcgcgattctgaggaggtttcgctgggatgcgtacaagccggcggatggcaagcactggtcgttctcctttgttttgcaacgctcgcatgtgaagattcctgctaagtttgtacaacattacattgccgaagagcatctgaacatccacatggctaacattttaagccccctcggcaaattctggcgcattgagctcgagaaggatgaattgggcatgtttttcaaaggaggctggttacagtttctgtcattccatggcttttccccgggtgatgttgtgctcttgaggtatgaaggcaacttggtgttcaaaatcaaagtgtttgggatcaatggatgcaagaatgacttgaagaccaaggacaacaccagaattcagcaaaaaaccaacatgaaataccttctttttctacaaggaaatgtaacaagaacagtagatttggttaagatgataaaaaccaattacaggaaataccttgcagtacaaaggtctttgccagagatcttctgcaagtcgatcgggctcgtagaagaaagcaccatcactctaatgatgaacaactcgagaggaagaagcagcaacagcagcagcagcagcagaacgggtaacggctgctgcaacctgcttccatccggctggaagaggttctgccaggcgaacggtctcctcgtaggcgacgtctgcaccttcagcgtcgtcgaggccaccctgtggcatgttgccatcgatcgagcagtcgagcgtagctga
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| Protein seq | MQRSRRTMLATAEGSEELSAILRRFRWDAYKPADGKHWSFSFVLQRSHVKIPAKFVQHYIAEEHLNIHMANILSPLGKFWRIELEKDELGMFFKGGWLQFLSFHGFSPGDVVLLRYEGNLVFKIKVFGINGCKNDLKTKDNTRIQQKTNMKYLLFLQGNVTRTVDLVKMIKTNYRKYLAVQRSLPEIFCKSIGLVEESTITLMMNNSRGRSSNSSSSSRTGNGCCNLLPSGWKRFCQANGLLVGDVCTFSVVEATLWHVAIDRAVERS |
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| Function | Putative B3 domain-containing protein Os04g0347400 [UniProtKB/Swiss-Prot:Q7XS74] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0008920 | OsLima_04g0008920.01 | Chr04 | 17005966 | 17010834 | + | NAM | ||
| CDS seq | atgcagaggagccggcggacgatgctcgcgacggcggaaggaagcgaggaattgagcgcgattctgaggaggtttcgctgggatgcgtacaagccggcggatggcaagcactggtcgttctcctttgttttgcaacgctcgcatgtgaagattcctgctaagtttgtacaacattacattgccgaagagcatctgaacatccacatggctaacattttaagccccctcggcaaattctggcgcattgagctcgagaaggatgaattgggcatgtttttcaaaggaggctggttacagtttctgtcattccatggcttttccccgggtgatgttgtgctcttgaggtatgaaggcaacttggtgttcaaaatcaaagtgtttgggatcaatggatgcaagaatgacttgaagaccaaggacaacaccagaattcagcaaaaaaccaacatgaaataccttctttttctacaaggaaatgtaacaagaacagtagatttggttaagatgataaaaaccaattacaggaaataccttgcagtacaaaggtctttgccagagatcttctgcaagtcgatcgggctcgtagaagaaagcaccatcactctaatgatgaacaactcgagaggaagaagcagcaacagcagcagcagcagcagaacgggtaacggctgctgcaacctgcttccatccggctggaagaggttctgccaggcgaacggtctcctcgtaggcgacgtctgcaccttcagcgtcgtcgaggccaccctgtggcatgttgccatcgatcgagcagtcgagcgtagctga
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| Protein seq | MQRSRRTMLATAEGSEELSAILRRFRWDAYKPADGKHWSFSFVLQRSHVKIPAKFVQHYIAEEHLNIHMANILSPLGKFWRIELEKDELGMFFKGGWLQFLSFHGFSPGDVVLLRYEGNLVFKIKVFGINGCKNDLKTKDNTRIQQKTNMKYLLFLQGNVTRTVDLVKMIKTNYRKYLAVQRSLPEIFCKSIGLVEESTITLMMNNSRGRSSNSSSSSRTGNGCCNLLPSGWKRFCQANGLLVGDVCTFSVVEATLWHVAIDRAVERS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0347400 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g28000 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0347400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0008990 | SBH | 0.0 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0009740 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0009510 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0009190 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0009350 | SBH | 0.000000 | 0.0 | 0.876558 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0262100 | SBH | 0.0148945 | 0.192561 | 0.0388365 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0008460 | SBH | 0.0 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0258200 | SBH | 0.0407375 | 0.1192835 | 0.0412725 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0008660 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0008710 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0018450 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0009370 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G008450 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0008530 | SBH | 0.0 | 0.0 | 0.0 |
