Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0008730 | OGI:04022070 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:16773225-16780995 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcagagccacgtgggcctcgtaccactattgtagtcaagcttgacctggtcagcttcgaccatggacccacctgtcagcaaccaaaacattcttcttacaaaattaaatcaggaaaatgtacacaaatcattcatgggaatttgggctgcctgaattagtccggtcagttcgatttgcataatacgatgaccgaactcaccgtgccgatgtcggtctttccaatcctctaaccaaactaatgaccgaacactgtgtcttttggcttttgggattctcggtccttgtatctcttcgagtgcggtattcaggatgtgtttagattcaaagtttggatccaaacttcagttcttttctatcacatcaatctgtcatacacgcataactttttaatcatattatttttaattttaaccaaaatccaaacttaagatccaactaaacacagcctcagtttttacgccaacccctagccgatcaaactaccaaactgcattggggttgacagatgttcgtcgtgaacgtcgagggagctgctacaccatcttatctgtgcgtcgagggaaccagttgacatgggatttagatcttctgtgtgtgtcaaggttaccggtgtactatgtatttgaggatattgactgttactacaagataatcgactatcgtcatcaatttattacaataaaaaataattcatggtaatatattatactatcgcagttataattttttttaaataactatactttgttgcaacgatttataatcgttgttttattcagtatttttgttgcaataaaaaatgagctatcgccataaaaaaacattactattgcaaaaaacatgttctatcgccacaaatttaattttgtggcaatttgtatagtacatggtacttttctctattttctattgccatgatcaacaaatttgttgcaataaaaaatttatcatctcataatttaacttattatttccatatgcacacggattaggacaaattttatatggaatttatagcactcaatgagatctacaacttaaattttttatttgaaatcttttaaatactcaaattcatgattcaaatctcagttaggcagtctcaaatagaattatatgtatttttaaacaaaattgatatgtaggtgagttggtcatggagagagcgcgcgtgagggagagatcttgggttcgaatcccagccataaatggatatcaaaagaaaatagttaggttgataaattaatattgaaacatttaatttggtacgtagaactaatgccacacatggagtggtggcaatagttatttattgcaacgatgtgaagtattgcaatatataTtttttgccacatccattttattgcaatatcaaaatttattacaactaaataaaaatcgttgcaataacctattgttggcggatggcatgaggcccttcgaccaaatctgccgaaacccatggcgaagacaatggagcaagaacggcgagaggcgaggggtcgtgcgagtaagccagaggcgtcccaggcgaagggtgcaaggcgaagattatctaccgaaggaagacgacttcgccatggcaagttcgccctcgcgagggccgaagaagcctttccggcccatcaagcctaggggctatagggccggcgaacgcccgacagcccatcagaggcccataagcctccataacattatgtacccctgtaaatgtcccttttttttaggggggaatgcactgtaggggaagcccccacagttaaatagctttattatagaaaaaaaattacaaaagatataaccaattcaaaagggactgtctctcagaaacatttaatctaaaaactaaaagggaaagatcactcttaaagagagctttccaagaagaaattgagggtgctaaattctggaaaatcagggagttcctctttttccaaatattccaggctgcataaagaattttctccacaaagtgcgtagacctataagaattcattgcctgatgcagcatatctgtgaaggcaagagaaatatcccagacaattccaaactgtgcccagcaatcagcactaaaaggacattgaaaaaatagatgaaaggtggtttctcttgcacaggttgagcaaaggacacaagttagatctgaattattgggagggcaatgccttctgtcaagcatgtcataagtattgagtcgatcaattaacaggagccatccaaaaactttaaccttcatagcgcacttactcttccagatccaagctagataactaggcgcatgtatatgcatgaaattaatgtcatatattttcttggaagagaacaaaccatttccccaaacataagaccagacatcattctgatcagataattgatctaaaggatcagctgcagacattgtatcatactcatggaaggcttgctcagacagaaggagattaaaacgctgcgaaatactcttggaagaggttaaactcactgaatccttcaaagaaacagcataagagtgaatccttgggtacattactaacctgactttattattccagaaatcatcccaaaacagacaagtctttccatccccaaccttataggtggacaatcccctgaaaatgtctgcaaattgtagaacatctttccaccaaaaagaccctctagggcgatcagcatgaggaactttgttaatataataagtggaccagatcaagctaacccaaggtattgagagcctatcataaaatttgtgcagatttttcattaaaagagcattattatgcaacctcaggttaatgactcccagacctcctctacttttaggttgacaaaccctttcccaaagaaccaaagatttcctgctagaattaatattagttCctctccataaacaatttcttctagctctatcaatgttttcaattattgactttggaagggaaagagagcacatatagtaagttgggagggaggataaaactgaattgaccatagttaatctatctccataagacagaagagcagaagtagtagacaatcttctctcaaccctatcaactaagggggcaaaatcaattatctttggcctagttgttcccaaaggcagacctaaataggtgaaaggtaaagtgcctactgagcaaccaaacatcttggacaaatgctgcaccttttctatgtccacattcagaggaatcatgcatgatttactgtagttaatcttcaaaccggtagaatctgcataagtgttgagaatagccttcaaacagaaaagctcttttgaggaagctatcaagataagtagagtatcgtctgcatactgtacaactggaaagtcattatcaggagttgggattggaatagtcaaaacaCcctgagaataagctttgttgacaacagactgcagtaaatcagcatctagcacaaataaaagaggtgataatggatccccttgccttacaccccttttgcaataaaaattccttccaggaaccccatttagaagaactgaagaagatgctgaagaaaagatcaaatcaatccaattcaaccactttgaatcaaaacctttttgtctcatgatgtccaaaatagtagagtgctctatagtatcaaaagctttctcaaagtccaacttcaacagcactatctccctttttgattgttggcactggtgtaagtactcaaaagaccaagagagacaatcctgtattgtcctgcctttgatgaaaccatattggttttgatggatgagttctgtaattacagactgaagcctatcagcaagaacctttgttaaaagcttgagagccacactttggagagaaatcggtccgtagtcattaaccctctcaggtgttgatttcttgggaacaagagtaatgaaagatctatttaaactttccaaagccaagttaccttcacaaaactgagcacaaagggtgtaaaaatcctgcctaataataggtcaacaacttttaataaagcatccattaaaaccatctggaccgggtgctctatcagtaggcattcttttaacaacctcatcaatttcagagatggagaagttttcagacaagtgggtaagactatcattgtgagaaaccaaactctacaggtcaaagtgcataacaggtagcaaagacactcccattctctgctgaaaagtttgaaaaattatctgcgccttttcattgtgctgggttaaaactcttccatcatctgtctgcaagtgagttattaagttctttctgtacctctcagtagccgctgcatgaaaaaatttagtattctcaccaccAaaagttgcccaccttatagtgcatcTtttctgccagtacatttgcttatatctcaggtactgcaaaactttccttttaacaatgaatctgagattccattcagccaaggtcaaatctcttatctcctcaagattatcaataaaggctatgaccagattacagtttgctatgagtgaggacaacttggacaagcctttactccattttttgagaccttttctaagagatttaaattttgatgttatattcttagcagcatccaaaccagtcccatgattagaccagattgaagaaatcaactgaaagaaaccctcatgctctatccagaaattctcaaacctaatgagattagactttgggattgaagtttctatttggaccacacatgggacatgatcagaaatagatctagccaaaggctttaccaaggtgcttggataggaagcagtccaagaaacagtcgtaaagaaccagtcaagttgctccaagagaggtgaattctgcatattactccacgtgtaagacctacctttcaaaggcaactcaaggagaccaagattactgattatattattgaaaatcatcatgtcattcatatcccaacctgccctatttttgttctcaacagatctgtaaaagttaaagtcacccaagaggatccaattttcattgtcaggaaTttgcaaatcaaacaaccactgggcaaagagggatctatcaggatcaacacacgggccatagactaaaacaagagtccaggactcagcagagtgttttggaaagaactttacaatcacagcagaccgggtgatacaaataacattagcagcaaagattgcaacaacccaacagaccaagatacctccagaagctccaacggaaggagagaaagagaaagaatcaaagcgtttcggagctaacttcttaacataagcagtatcaaaactttccttcttggtttcctgtaaacaaaaaactgagcaactactatcatcaacagcttgcctgacagctctgcatttatccgctgaatttacacctctcacattccaacacagaatattccaatttcttgtaagattactcatagaaagtagataaggaacaaggtaaatagaacataattaaattacattccaaagccaagagctgactggtccaagcaaaaaataaagggggcaagctagaacagactacagagcaatagtctggagaggaaacataggacacgaaggaacataactgaagataaacaaagccactagggctaaggaacatagaacaagacaaagttctagatttattcctaggaaacctaaacagaaccagacttagaaactcaagattcatcatcaacagactttggagcagaagccaggaggctttcctgtgtcacatcctgaggagcaacaccacaaagatcagtggccattttctggaggagaggaatagggcaatcagcaggaccttccacttcagctgtaccttccatgaagtcagattcttgcagagaacttcctgagaaaagaaggcccacctcatgagcaacctgcttgagcttttttacagacttgcccctaggtttcccaattccttgattaggatcaggctcaacaagaatatcatccttaaaactcaatttgcgtgcatcaaaaatagcaaggagtcttttgctgcttcttaatcctgtagcaacaacaggagtggcagatccaactgctctcttcttgtaagtcctttttgctggtttaactggggcgtcagaatcagtgagggctaaaaaaACactaggaggcggcgcaacagcaagtggaacaggatcaagaatttcattagccccagaaacaacaggaacatcattccctgaagcccagttagaagtaccaagaacacttccagagtttaaggcagaccaaaaggatgcatccttgacaaaattcttatcaaacataatctgaggaaacctctggcataaattctttaaaacattagcatcaacagaaacttcctggaccatcaagctatTGtcagccccaatctcacttgcttcactactagaaatactgataatagaaccagagttacctgaattgacagctaaaatagaactagcaaaggaggaattaatttgtagcacatcagtaggctgtggaatctcaggcAAaaaatcaacattgtcattcacattgtcctgaccctcatcccaattatcccaaccctgattctcttcctgatcaaaaTtctgcacattaccaaattgccaagctggaacatcctcaaaattaacattaggatacacaggaccttcacccatcggcagatcatcatcaagagggaaagcatcagcaaactcaccatttagggtataaacatagatagtccatgactggccgtttggagcatttggttgctcccaaacaacatactgtggcacagagtctaaatctttataccatactcttgccaaaaccctacccttgagagtatcagaatcataccaccagtccagctcaccaaaggttgaaatgacttgtttcacattatgcaaagtaacatagtccagcgggaaatcaagcaacatgacccaacctctatgattatagggagcattacgccaattcggaccctgattatgtctaacaaaacagacctcatgaaccgcatcataagcaatgggctcaccaagaactaaagcatcccgatgaacaggtgaactaatctggaataaagcgacagcattcggatgcgggaaggaagcaagcacacgaatattcctgacctgatcaagaaactccctaatctcagcacgatgctcatccgattgatcttcaggcaacggaggaaggaccagagccaagacgtactgctcatgactcatgattgagggagtgaagttaactgagtccactcgccggcgtcgatgaggcccagctgggtgcaaatgcagtccgggagggatgaatcggagaggatttggatgaaggttcgccattgaagacggagagctttctcgagaaaaggggttttccgcagcagcagagagtggaagacggggggacttaggcttgacaaccgattttttaacccagacTtttcgaaccctaggggaaaaccgtttgaatggaccactacccaagggtttaggcccagcactgggagtaggcttaggaatcggatcagagggtttatcaacaaccttcgaaactttaggcccagagattggattctgagagttcggatctgatgagcttgcaatcagaaatttggaacatgaacgagaggaatcatgaacatggaagcggttaaaaaccttagagattggaatggaggatgaagcaacagtaacagactttgatttaacagacatagatttctttctcttaacaacagaccactcactgagctgctcagattcccaccgacgaaactcaaacctccaattaggaccaccatcacgccataagaaaaacctcat
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| CDS seq | atgaggtttttcttatggcgtgatggtggtcctaattggaggtttgagtttcgtcggtgggaatctgagcagctcagtgagtggtctgttgttaagagaaagaaatctatgtctgttaaatcaaagtctgttactgttgcttcatcctccattccaatctctaaggtttttaaccgcttccatgttcatgattcctctcgttcatgttccaaatttctgattgcaagctcatcagatccgaactctcagaatccaatctctgggcctaaagtttcgaaggttgttgataaaccctctgatccgattcctaagcctactcccagtgctgggcctaaacccttgggtagtggtccattcaaacggttttcccctagggttcgaaaAgtctgggttaaaaaatcggttgtcaagcctaagtccccccgtcttccactctctgctgctgcggaaaaccccttttctcgagaaagctctccgtcttcaatggcgaaccttcatccaaatcctctccgattcatccctcccggactgcatttgcacccagctgggcctcatcgacgccggcgagtggactcagttaacttcactccctcaatcatgagtcatgagcagtacgtcttggctctggtccttcctccgttgcctgaagatcaatcggatgagcatcgtgctgagattagggagtttcttgatcaggtcaggaatattcgtgtgcttgcttccttcccgcatccgaatgctgtcgctttattccagattagttcacctgttcatcgggatgctttagttcttggtgagcccattgcttatgatgcggttcatgaggtctgttttgttagacataatcagggtccgaattggcgtaatgctccctataatcatagaggttgggtcatgttgcttgatttcccgctggactatgttactttgcataatgtgaaacaagtcatttcaacctttggtgagctggactggtggtatgattctgatactctcaagggtagggttttggcaagagtatggtataaagatttagactctgtgccacagtatgttgtttgggagcaaccaaatgctccaaacggccagtcatggactatctatgtttataccctaaatggtgagtttgctgatgctttccctcttgatgatgatctgccgatgggtgaaggtcctgtgtatcctaatgttaattttgaggatgttccagcttggcaatttggtaatgtgcagaAttttgatcaggaagagaatcagggttgggataattgggatgagggtcaggacaatgtgaatgacaatgttgattttTTgcctgagattccacagcctactgatgtgctacaaattaattcctcctttgctagttctattttagctgtcaattcaggtaactctggttctattatcagtatttctagtagtgaagcaagtgagattggggctgaCAatagcttgatggtccaggaagtttctgttgatgctaatgttttaaagaatttatgccagaggtttcctcagattatgtttgataagaattttgtcaaggatgcatccttttggtctgccttaaactctggaagtgttcttggtacttctaactgggcttcagggaatgatgttcctgttgtttctggggctaatgaaattcttgatcctgttccacttgctgttgcgccgcctcctagtgggtccatggtcgaagctgaccaggtcaagcttgactacaatagtggtacgaggcccacgtggctctga
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| Protein seq | MRFFLWRDGGPNWRFEFRRWESEQLSEWSVVKRKKSMSVKSKSVTVASSSIPISKVFNRFHVHDSSRSCSKFLIASSSDPNSQNPISGPKVSKVVDKPSDPIPKPTPSAGPKPLGSGPFKRFSPRVRKVWVKKSVVKPKSPRLPLSAAAENPFSRESSPSSMANLHPNPLRFIPPGLHLHPAGPHRRRRVDSVNFTPSIMSHEQYVLALVLPPLPEDQSDEHRAEIREFLDQVRNIRVLASFPHPNAVALFQISSPVHRDALVLGEPIAYDAVHEVCFVRHNQGPNWRNAPYNHRGWVMLLDFPLDYVTLHNVKQVISTFGELDWWYDSDTLKGRVLARVWYKDLDSVPQYVVWEQPNAPNGQSWTIYVYTLNGEFADAFPLDDDLPMGEGPVYPNVNFEDVPAWQFGNVQNFDQEENQGWDNWDEGQDNVNDNVDFLPEIPQPTDVLQINSSFASSILAVNSGNSGSIISISSSEASEIGADNSLMVQEVSVDANVLKNLCQRFPQIMFDKNFVKDASFWSALNSGSVLGTSNWASGNDVPVVSGANEILDPVPLAVAPPPSGSMVEADQVKLDYNSGTRPTWL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0008730 | OsLima_04g0008730.01 | Chr04 | 16773225 | 16780995 | - | NAM | ||
| CDS seq | atgaggtttttcttatggcgtgatggtggtcctaattggaggtttgagtttcgtcggtgggaatctgagcagctcagtgagtggtctgttgttaagagaaagaaatctatgtctgttaaatcaaagtctgttactgttgcttcatcctccattccaatctctaaggtttttaaccgcttccatgttcatgattcctctcgttcatgttccaaatttctgattgcaagctcatcagatccgaactctcagaatccaatctctgggcctaaagtttcgaaggttgttgataaaccctctgatccgattcctaagcctactcccagtgctgggcctaaacccttgggtagtggtccattcaaacggttttcccctagggttcgaaaAgtctgggttaaaaaatcggttgtcaagcctaagtccccccgtcttccactctctgctgctgcggaaaaccccttttctcgagaaagctctccgtcttcaatggcgaaccttcatccaaatcctctccgattcatccctcccggactgcatttgcacccagctgggcctcatcgacgccggcgagtggactcagttaacttcactccctcaatcatgagtcatgagcagtacgtcttggctctggtccttcctccgttgcctgaagatcaatcggatgagcatcgtgctgagattagggagtttcttgatcaggtcaggaatattcgtgtgcttgcttccttcccgcatccgaatgctgtcgctttattccagattagttcacctgttcatcgggatgctttagttcttggtgagcccattgcttatgatgcggttcatgaggtctgttttgttagacataatcagggtccgaattggcgtaatgctccctataatcatagaggttgggtcatgttgcttgatttcccgctggactatgttactttgcataatgtgaaacaagtcatttcaacctttggtgagctggactggtggtatgattctgatactctcaagggtagggttttggcaagagtatggtataaagatttagactctgtgccacagtatgttgtttgggagcaaccaaatgctccaaacggccagtcatggactatctatgtttataccctaaatggtgagtttgctgatgctttccctcttgatgatgatctgccgatgggtgaaggtcctgtgtatcctaatgttaattttgaggatgttccagcttggcaatttggtaatgtgcagaAttttgatcaggaagagaatcagggttgggataattgggatgagggtcaggacaatgtgaatgacaatgttgattttTTgcctgagattccacagcctactgatgtgctacaaattaattcctcctttgctagttctattttagctgtcaattcaggtaactctggttctattatcagtatttctagtagtgaagcaagtgagattggggctgaCAatagcttgatggtccaggaagtttctgttgatgctaatgttttaaagaatttatgccagaggtttcctcagattatgtttgataagaattttgtcaaggatgcatccttttggtctgccttaaactctggaagtgttcttggtacttctaactgggcttcagggaatgatgttcctgttgtttctggggctaatgaaattcttgatcctgttccacttgctgttgcgccgcctcctagtgggtccatggtcgaagctgaccaggtcaagcttgactacaatagtggtacgaggcccacgtggctctga
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| Protein seq | MRFFLWRDGGPNWRFEFRRWESEQLSEWSVVKRKKSMSVKSKSVTVASSSIPISKVFNRFHVHDSSRSCSKFLIASSSDPNSQNPISGPKVSKVVDKPSDPIPKPTPSAGPKPLGSGPFKRFSPRVRKVWVKKSVVKPKSPRLPLSAAAENPFSRESSPSSMANLHPNPLRFIPPGLHLHPAGPHRRRRVDSVNFTPSIMSHEQYVLALVLPPLPEDQSDEHRAEIREFLDQVRNIRVLASFPHPNAVALFQISSPVHRDALVLGEPIAYDAVHEVCFVRHNQGPNWRNAPYNHRGWVMLLDFPLDYVTLHNVKQVISTFGELDWWYDSDTLKGRVLARVWYKDLDSVPQYVVWEQPNAPNGQSWTIYVYTLNGEFADAFPLDDDLPMGEGPVYPNVNFEDVPAWQFGNVQNFDQEENQGWDNWDEGQDNVNDNVDFLPEIPQPTDVLQINSSFASSILAVNSGNSGSIISISSSEASEIGADNSLMVQEVSVDANVLKNLCQRFPQIMFDKNFVKDASFWSALNSGSVLGTSNWASGNDVPVVSGANEILDPVPLAVAPPPSGSMVEADQVKLDYNSGTRPTWL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0330400 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g27620 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0330400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0008450 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0009570 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0009340 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0009020 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0009180 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0258000 | RBH | 0.006777 | 0 | 0.0419545 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0008290 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0254400 | RBH | 0.003517 | 0 | 0.056525 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0008940 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0006710 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
