Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0007790 | OGI:04049010 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:15329819-15330436 | ||||||||
| Gene Symbol | UCL15, OsUCL15 | ||||||||||
| DNA seq | GGAAAGGCTAATATTTTCAAGGTCAATTTGATGATCAAAAGGCCAATTTGTTATTTAGGGCTTAGTAAATTCTAGAAAGCCAGAAATTATTAGGAGCCAGAAATTGCAGCATGCACCTGATGAACACTAGTAGCAGTACACACACTCAGATACACAGATATTACATACTTAATTAATCCccctgaacaaagtaattaaggccggtgggtgcatatatttatttggtgtctgcagaggggaattcgtcggcgacgacgcggagcttcatcccggcggcgcagtggccggggacgccgcagatgaagtagttgacgccctccttgagctcgacctcggcgctCccggccgccgtggccgccgcgtccgccgcgttgcgcaccctgcagctccggtactccgccgcgctcgccgccaccacgttgtgcacgcccgcctggtagttgaacactgcacacgcacaagcgaagctaCcggattaaactaattctcttgcatctgcagattgattatacataaagaagccggctaccagagagtaataatcgttgacttcgttttcattaatttgtgaagagcgcgctcccacacacacccacacgtttgtattgttaactccat
More
|
||||||||||
| CDS seq | atggagttaacaatacaaacgttgttcaactaccaggcgggcgtgcacaacgtggtggcggcgagcgcggcggagtaccggagctgcagggtgcgcaacgcggcggacgcggcggccacggcggccggGagcgccgaggtcgagctcaaggagggcgtcaactacttcatctgcggcgtccccggccactgcgccgccgggatgaagctccgcgtcgtcgccgacgaattcccctctgcagacaccaaataa |
||||||||||
| Protein seq | MELTIQTLFNYQAGVHNVVAASAAEYRSCRVRNAADAAATAAGSAEVELKEGVNYFICGVPGHCAAGMKLRVVADEFPSADTK |
||||||||||
| Function | Blue copper protein [UniProtKB/Swiss-Prot:Q41001] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0007790 | OsLima_04g0007790.01 | Chr04 | 15329819 | 15330436 | - | NAM | ||
| CDS seq | atggagttaacaatacaaacgttgttcaactaccaggcgggcgtgcacaacgtggtggcggcgagcgcggcggagtaccggagctgcagggtgcgcaacgcggcggacgcggcggccacggcggccggGagcgccgaggtcgagctcaaggagggcgtcaactacttcatctgcggcgtccccggccactgcgccgccgggatgaagctccgcgtcgtcgccgacgaattcccctctgcagacaccaaataa
More
|
|||||||
| Protein seq | MELTIQTLFNYQAGVHNVVAASAAEYRSCRVRNAADAAATAAGSAEVELKEGVNYFICGVPGHCAAGMKLRVVADEFPSADTK |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g25454 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0007950 | RBH | 0.0 | 5.607122 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0022600 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0008610 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0008060 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0008230 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0238000 | RBH | 0.1280375 | 1.4309695 | 0.2446765 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0007870 | RBH | 0.0 | 4.909155 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0235100 | RBH | 0.267198 | 0.5930475 | 0.1331805 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0008020 | RBH | 0.0 | 5.085918 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0008080 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0007980 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0008340 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G007940 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0008030 | RBH | 0.0 | 43.734787 | 0.000000 |
