Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0006450 | OGI:04040910 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:12999180-13000523 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgagaagagaggaggtgtctcctagctgccagaccttaaccacagcagttgcagcatttgccaagcgcaagtgtctccgagaaggtgagaaactgcattctttcgcatttaggagtggtgtcagtgatgcaattttggtggcatcctttgtggatttttatgccaaatgcagcagattggtctcgtcagttcagaaagatattgttgcatggagttcgatgattgaagcatacacgatccatggctatggtaaggaggctctggcattgttccacaggatgctagatgaaggagtaaggccaaacggggaccatcctgagcttgttgtcagcatgtagtcactccgttcttgttagtgaagttcatgaattgtttgattgcatgacaagaacgtttggcatcacacctgacctgagcttggccattacacctgcatggtggatgttcttggacgatcaggcaacctagatgatgctttacaagttatcagtgatatgaatggtaagccagatggaagaatttggggtgctctccttgcttcttgaagaacacactcgaacagtaagcttgcttcttatgcagctcagaaacttatggaattggaaccaggtaatgtcagctaccatgtggtgttcagcaatgcccaagctggtactgatcgatgggatgaagttgaaagcattagaagctctatggtagagatggacctgcAaaagctgcctgcatggacctgtgtttctaagaccgttagcccttgatttgtattttctataacttcccaaaactcatgttgatttggtatctatggatgttgctgtgtattgagtatgttggattggccaagatgtctcactgtatcaactgttgatgtttcagtgtgagagtgaagtttctatagatgatcaggcaataaaaggtcctcggctcctcgttgaatgatgaaacattccagccttcttggtaacttcagggatacatgtaatgagaaaaccattgtaaaatttcagtatcgacagctaccagtgtagtcagcatactacctgttagcctgcttgggagcaggaacagaagccatctagcttgttgaagagctgaagctgtaagtccccgctaaccttccattgattctgcagatgcagcagctcgggtgcttcacatttgcaaggcgcagatcgaaaatgaagagctgctgtgaagtggcaggagtgtggtcatggtgtcactctcacaagtcacaagtcaaggtggaggccgcaattacggggcgtcgcagaccaaggccaccaggctggcatgatagcagagttgaacaagacctgtatgacaacggtaaaatttgttga
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| CDS seq | atgagaagagaggaggtgtctcctagctgccagaccttaaccacagcagttgcagcatttgccaagcgcaagtgtctccgagaaggtgagaaactgcattctttcgcatttaggagtggtgtcagtgatgcaattttggtggcatcctttgtggatttttatgccaaatgcagcagattggtctcgtcagttcagaaagatattgttgcatggagttcgatgattgaagcatacacgatccatggctatggtaaggaggctctggcattgttccacaggatgctagatgaaggagtaaggccaaacggggaccatcctgagcttgttatggaagaatttggggtgctctccttgcttcttgaagaacacactcgaacagtaagcttgcttcttatgcagctcagaaacttatggaattggaaccagatgcagcagctcgggtgcttcacatttgcaaggcgcagatcgaaaatgaagagctgctgtgaagtggcaggagtgtggtcatggtgtcactctcacaagtcacaagtcaaggtggaggccgcaattacggggcgtcgcagaccaaggccaccaggctggcatgatagcagagttgaacaagacctgtatgacaacggtaaaatttgttga
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| Protein seq | MRREEVSPSCQTLTTAVAAFAKRKCLREGEKLHSFAFRSGVSDAILVASFVDFYAKCSRLVSSVQKDIVAWSSMIEAYTIHGYGKEALALFHRMLDEGVRPNGDHPELVMEEFGVLSLLLEEHTRTVSLLLMQLRNLWNWNQMQQLGCFTFARRRSKMKSCCEVAGVWSWCHSHKSQVKVEAAITGRRRPRPPGWHDSRVEQDLYDNGKIC |
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| Function | Pentatricopeptide repeat-containing protein At5g55740, chloroplastic [UniProtKB/Swiss-Prot:Q9FM64] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0006450 | OsLima_04g0006450.01 | Chr04 | 12999180 | 13000523 | + | NAM | ||
| CDS seq | atgagaagagaggaggtgtctcctagctgccagaccttaaccacagcagttgcagcatttgccaagcgcaagtgtctccgagaaggtgagaaactgcattctttcgcatttaggagtggtgtcagtgatgcaattttggtggcatcctttgtggatttttatgccaaatgcagcagattggtctcgtcagttcagaaagatattgttgcatggagttcgatgattgaagcatacacgatccatggctatggtaaggaggctctggcattgttccacaggatgctagatgaaggagtaaggccaaacggggaccatcctgagcttgttatggaagaatttggggtgctctccttgcttcttgaagaacacactcgaacagtaagcttgcttcttatgcagctcagaaacttatggaattggaaccagatgcagcagctcgggtgcttcacatttgcaaggcgcagatcgaaaatgaagagctgctgtgaagtggcaggagtgtggtcatggtgtcactctcacaagtcacaagtcaaggtggaggccgcaattacggggcgtcgcagaccaaggccaccaggctggcatgatagcagagttgaacaagacctgtatgacaacggtaaaatttgttga
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| Protein seq | MRREEVSPSCQTLTTAVAAFAKRKCLREGEKLHSFAFRSGVSDAILVASFVDFYAKCSRLVSSVQKDIVAWSSMIEAYTIHGYGKEALALFHRMLDEGVRPNGDHPELVMEEFGVLSLLLEEHTRTVSLLLMQLRNLWNWNQMQQLGCFTFARRRSKMKSCCEVAGVWSWCHSHKSQVKVEAAITGRRRPRPPGWHDSRVEQDLYDNGKIC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g21910 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0006440 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0007050 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0006850 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0006470 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0006890 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0199100 | RBH | 0.030045 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0006680 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0207900 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0006770 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0006750 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0006640 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0006900 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G006570 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0006700 | RBH | 0.0 | 0.0 | 0.0 |
