Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0004050 | OGI:04022330 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:7135965-7143361 | ||||||||
| Gene Symbol | RLCK134, OsRLCK134, OsLecRK1, LecRK1, OslecRK | ||||||||||
| DNA seq | ctatggaagtgagctgatgaaggaacagagatcaggaggactggggattgcaactgcaccatcaagcatttgtgtcacctttagcatgttaggtcgcatgcttgggtcctcctgaaggcaccacaatgccactgtcacaaatctttccaccttcttaatattgtagatcgcctcatcatcgccctctaccagcaaatcaatcctcccagaccggtagcagtcattggcccagtaagtcactatcgtctgttcctcatcgacaacctctagctcgacattcctcctacagcaaacaagctctagtagtatcactccgaagctataaacatcaaccttggtagagatcccaatgttcttgaaccactcaggtgcaacataacctcgagtaccccgaataccggtgtttgtccttgtttggtttgtcaaaagaagctttgctaggccaaagtctgaaatcttggccacaaggttgtcatcaagaaggatattctgcggctttatgtcacaatggatgatttgcttgctacattcgtcatgtaagtagagcaaacctcttgccaccccaagcgcgatatgaactcgggtgttccaatgtgggcgactattgtcgaacaaaagacggttgagagggccattggtcatgaactcataaactagcagtctttcggctccttcattacagaaaccaagcaatctaaccaaattcttgtggaatgtctgcccaatggtctcgacttctaccatgaactccttctcggtttctggttggagcttgtcaatctttttcactgcaatgttggtcttgagttcatcctccaactggcccttgtacacaacaccagaggcaccggcacctagaatctcatggaagccagccgttgccttctccagctctttgtaagtgaaggtcttcaagggtagttgggatttacttgatgcttgtgacaatgggatattcttttttgtggctattctacagtaagtaccaaaaaggaaaatggagatgagtgcaaagttcaccaatatggaggttccaagaatcaaagaactccctaggacccagtgcttcctgttcctcttccatttgttggagcttgtactgatcatggattgcgaactattgctacttggcaccttgagaagaacggtcctctggacatagtcagccatattcccatttgacaaagggagcttcttcttccagcaagtgctggtgctctgattgtacaccgccatggcgcagaagcagtcgatcatacacagccttccacaatcatcttgtcctatgggctcatatttgttagcataatccttgctactgtaggttccttagctagtaagaatgtacagctgcttaacagctggtagtagtagtaaatttagtctttactttagctgtaaacagcaagatgaatagtatgtcggttactgtagcatactgtagcaccgacttaaagccctataaaaggacatgtacccctcttgagttagtaagcttttcagctcattttcagtttcagtttcagctagactattgagtgtagttcagaagtgatcctaccaacaattggtatcagagctcaggttaaagaagtgtgagagagagatggagggagtaccagctgctggagccaatgcttccaggtcgccacaacaccgaggccgccgtcactcgttatcgccaacaccacggcgaggacgaggtcgaggcgctgctgttcgagaggttgttgtgcagcggactgtcagggaggttggcggcgctgctgctttccccaccctcacgcgaaccaactacaccgagtggtcgctgctgatgaaggtgatgctgcaagcccgtggcctttgggacgcggtggagcatggtgaatgcgatgagcaagaagacaggatggcaatggaggccatcctacgcgctgtccccagcgagatgatctcgctgctcgccaccaaggactccgcgaaggacgcctgggatgccatcaaagtgatgcacgtcggcgtggaccgcgtgaggaaggcgaaggcgcaacagctgcgccgggagtatgaatccatctcgttccatgatggtgaatcgatcgacgacttcgccctacggctcacaagcctagtgtctcagcttgggacattaggagaacgaatcgaggagcagaacgtcatcgagaagttcttgcgcgtcgtcccagagcgattttcccaaatcgctgtgtcgattgagaccctgttggatctctcgacactcaccatcgaggacgtcactgggcgtctcaaggtggcggaggaacggcaaccagctccaacgtcgacgactactccagccggaggccagcttctcctcacggaggagcagtggctcgcacggcagaaggagcgacaaaaaggggagcaatcctccaagcagtcgcaaggtggagctcgtcagcgacctcgctcccatcgcaagaaaagaggttttggtggcggcgtaggaggcgagaaagggaacaccaatcgggacacggcaccaaacagatgccacaattgtggccgtcttggccattgggccaaggactgtcgccagcccaagaaagaagccgctcacctagcccaaggtgatgacgatgacgacgtcctgctgctttcgcgggcatgcgagcttgaagatgacgatgccactttgttgatggcccacgcttgcgagctcaatgatggccccatcatcgcgccatctcctgtctccctcgttgaacagcgagtgcaggtgagcctgggagccacggacgctgaggacaaggaggaggcgtggtaccttgacacaggagccaccaaccacatgacgggccgtggtgacgtctttgctgagctcgatcgaagcgtcaccggcaccgtcaaatttggagacagctccatcgtagacatcaagggtgccggtaacgtcatcttcaccggcaagaatggcgagcacaaggttctcagtggcgtctactacattccgcgcctcaagagctcaatcatcagcatcggtcagcttgatgaaagcgagacgcgtgtgctggtcgaggacggcatcatgcgtatctgggaccgccgccgccgtcttcttgccaagatcaagcggggacgaagccgtctatacgtcctccgcctcgaggttgctaggccgatttgcttggctacgcgacatgatgatgttgcctggcgctggtacgagcgcttcgggcacatccacttcggctcgctagaaaagatgggccgacaagagctcgtgcgtggcctgcctcgactggagcatgtcgagcaactttgcgacacgtgtgtcatcaccaagcatcggcgcgctgcctttccaaaggcagccaagtaccgcgctcaggagccgctagatctcgtccatggcgacatctgtggccctatcacgccggcaacgccaggtggccggcgttacttcttgctgctggtcgacgatgccacacgatacatgtgggtggcgcttctagcagccaagagcaatgcacctgacgccatcaagaaaattcagatggcagccgagactcactatgggcgcaagctgtgtgtatttcgcacggacaacggcggcgagttcacgtcgcttgagttcgctgcctactgcactgatgagggtatccaacgtcatttctccgcgccctacgccccacaacaaaatggcgtggtcgagcggcggaatcagacagtggtgtccatggcgcgcgcccttctcaaacagaggggaatgcctgcggagttttggggggaggctgtcagcacggctgtcttcctcctcaattgtgcaccaaccaaaagcctcactggcaagacgccgtatgaagcttggcacggcaagaagccgatggtcagcttcctacgtaccttcgggtgcctggcgtacgtgaaggagctaaacgatgtgcgcaagctcgacgaccgcagcacacccggcgtcttcattggctatgaagaaggggtgaaggcatatcgtgtcctggatccaaggacacggcgtgtacgtctcgcccgtgatgtcatctttgacgagagccgcgggtgggactggacggcagcaagcggcacagatgctcgactgagcagcgatttcgccatcgagtaccatgttgagaagaccactgggcatcctatccctagtgtggggggaggcgtggtgaccccatcagcatccccaacgccactacaagagacttcaccagcaacccctgccacaccagcaccaagtcctagcgttgccccaacagagttcgtgtcacctccctcacacgacgaggagaggatcgacgcggcgcactccaacacccctgtccgctaccgcacagtcgacaacttgatcGgggagaatgccccggcaccagggattgcacaacgggaactcgaggaggcgtctttgctcctcgctggacctggtgagccatgctcgtttgcagaggcggagggtgatgatgcatggcgagcagccatgcgtgaagagatggacgcggtgaatcgcaatgggatttgggagcttgttgatctcccacatggccatcgcccaattggactcaaatgggtctataaattgaagaagaacgaggccggaaaggtggtcaagcacaaagctcgtctcgtcgccaggggatttgtccagcaacctgggattgattttgacgaggtttttgcgcccgtcgcgcgcatggagtcaattcgtctcctgcttgcggtcgccgcccaaaaagggtggcacgtccatcacatggacgtgaagtctgcctttctcaatggagatttggcagaggaggtgtatgtgaagcagccccctggttttgtcgtcgccggagaagaagacaaggtcctccggctgcgcaaggctctttatggcctgcgacaggcgccaagagcctggaatgcgaagcttgattgtactctgaaggagctcggtttcgaccaaagcaagcatgagcacgccatgtaccgacgaaacaatggtggctctgctctactcgtcggggtctatgtagatgaccttgtgatcaccgggccatcgacaagagcaattgaacaattcaaggaagaaatgaaggcaaagtttcagatgagtgatcttggcttgctctctttctaccttggaattgaggtgaagcaaggagatgatggaatctccctgaaccaggggcgctatgctcagcgcattgtggagtcggctggcctcaaggactgcaacccttgcgccactccaatggaagaaaggctcaagctgagccgtgatagcacggcacctcccgttgatgcaacaaaatatcgacggctggttggtagccttcgctatcttgtgcacacacggccagacctagcttttgctgttgggttcgtgagtcgcttcatggagcggccaactgaggagcacatggtggccgtgaagcgcattctacgctatgtcgctggcacgatggagtacggacttcattacaaaagagagaaagaggagcagcggctgattggttacagcgacagcgacctcgccggcgacattgatacaaggagaagcacaagtggcatgttgtttttccttgattcaagcttggtgagttggcaatccatcaagcagagagtggtggctttatcttcctgtgaagcagaatatgttgcagccaccaatgctgccacacaaggaatttggttggctcgattgcttggtgaactccttgggaagcaacctaaagcgatcgagctaaaggtggatagcaagtctgccttggcgctggcaaagaaccctgtcttccatgagcgcagcaagcatattgatttgcgctatcactttatcagagactgcttggaggaaggaagcatcaacgccagcttcatcaccaccatggaccagctcgctgacattctaacgaaggcattaggacgggtgaaattccaagaattgcgagctaagattggaatggtccaaatcaatcaaaatctgatgtgcaaggattaGggggagaattgttagcataatccttgctactgtaggttccttagctagtaagaatgtacagctgcttaacagctggtagtagtagtaaatttagtctttactttagctgtaaacagcaagataaatagtatgtcggttactgtagcatactgtagcaccgacttaaagccctataaaaggacatgtacccctcttgagttagtaagcttttcagctcattttcagtttcagtttcagctagactattgagtgtagttcagaagtgatcctaccaacaatatttctcatagtcagacagtggccaatccacaccataaattggtctcagctcaaactgagcaagtgccgttgcctcatccaagtcgcagctatgcggttgaaagtcttgcttacaccctttgtacttcttctgctcatcgaagaacttgtaccatggtgggcattggcagcttgcaatctgattcctggtgccatcaaaggtgcagtaactgttgaacccacagacgccactgccaacatctgaaactatggcatggcagatattctggggctgcatgctcactgctgtccatgtctcaccacctaggatgcctgcattcgctttcttcgggtacacatattgccggaaaacaccgtcagggtccagtgtggcgcgatggaagtagtctgccattgatccaattcctgcacctgatgagatgttgatctgtgtaccatctgtcagtgcaaagtataccttcccagtctcactgaataccaactctgagccatttccagtcgtgtcagtggaccaatattgctggtatttggatccagagggaacagcaacaagatacagggcaaggtttccatcagtttgcacatcaaggagaaaccgaccactggagtagtcatcgatgtcgagtcgggcacggagtgacttgttgcgagtcttgttgcaaggtatcacctgagtaggcaagatggtgtctgacggcatgtcaaaggtctgccactttgtcgtgccgtctgcaccaaggagcacaaaattgccggtgtcgcgcatgctagcatatgccacactggtaacctggggattccagccctcctgaccagaccggtctttcagtgagagtgcaccatcattagtgagttggagaaaagaatcagatggcacttctactatcgatggatcttggtcagtatttttggcataccagacaactgtcttatcgctaatcttgttgaaccagacggcgatgaggtagaaggaggtgttgccctctacaggtcggaagccaaatgcgaagtcgccagagggtgatagccatgaagaggcaggactctggggtgccaaagtggagcccaatgtgatgttcttctgagtttgtgcacaagttggggacagtagctgcaacagcatgggaaagagtagcagagcaaccat
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| CDS seq | atggttgctctgctactctttcccatgctgttgcagctactgtccccaacttgtgcacaaactcagaagaacatcacattgggctccactttggcaccccagagtcctgcctcttcatggctatcaccctctggcgacttcgcatttggcttccgacctgtagagggcaacacctccttctacctcatcgccgtctggttcaacaagattagcgataagacagttgtctggtatgccaaaaatactgaccaagatccatcgatagtagaagtgccatctgattcttttctccaactcactaatgatggtgcactctcactgaaagaccggtctggtcaggagggctggaatccccaggttaccagtgtggcatatgctagcatgcgcgacaccggcaattttgtgctccttggtgcagacggcacgacaaagtggcagacctttgacatgccgtcagacaccatcttgcctactcaggtgataccttgcaacaagactcgcaacaagtcactccgtgcccgactcgacatcgatgactactccagtggtcggtttctccttgatgtgcaaactgatggaaaccttgccctgtatcttgttgctgttccctctggatccaaataccagcaatattggtccactgacacgactggaaatggctcagagttggtattcagtgagactgggaaggtatactttgcactgacagatggtacacagatcaacatctcatcaggtgcaggaattggatcaatggcagactacttccatcgcgccacactggaccctgacggtgttttccggcaatatgtgtacccgaagaaagcgaatgcaggcatcctaggtggtgagacatggacagcagtgagcatgcagccccagaatatctgccatgccatagtttcagatgttggcagtggcgtctgtgggttcaacagttactgcacctttgatggcaccaggaatcagattgcaagctgccaatgcccaccatggtacaagttcttcgatgagcagaagaagtacaaagggtgtttgctctacttacatgacgaatgtagcaagcaaatcatccattgtgacataaagccgcagaatatccttcttgatgacaaccttgtggccaagatttcagactttggcctagcaaagcttcttttgacaaaccaaacaaggacaaacaccggtattcggggtactcgaggttatgttgcacctgagtggttcaagaacattgggatctctaccaaggttgatgtttatagcttcggagtgatactactagagcttgtttgctgtaggaggaatgtcgagctagaggttgtcgatgaggaacagacgatagtgacttactgggccaatgactgctaccggtctgggaggattgatttgctggtagagggcgatgatgaggcgatctacaatattaagaaggtggaaagatttgtgacagtggcattgtggtgccttcaggaggacccaagcatgcgacctaacatgctaaaggtgacacaaatgcttgatggtgcagttgcaatccccagtcctcctgatctctgttccttcatcagctcacttccatag
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| Protein seq | MVALLLFPMLLQLLSPTCAQTQKNITLGSTLAPQSPASSWLSPSGDFAFGFRPVEGNTSFYLIAVWFNKISDKTVVWYAKNTDQDPSIVEVPSDSFLQLTNDGALSLKDRSGQEGWNPQVTSVAYASMRDTGNFVLLGADGTTKWQTFDMPSDTILPTQVIPCNKTRNKSLRARLDIDDYSSGRFLLDVQTDGNLALYLVAVPSGSKYQQYWSTDTTGNGSELVFSETGKVYFALTDGTQINISSGAGIGSMADYFHRATLDPDGVFRQYVYPKKANAGILGGETWTAVSMQPQNICHAIVSDVGSGVCGFNSYCTFDGTRNQIASCQCPPWYKFFDEQKKYKGCLLYLHDECSKQIIHCDIKPQNILLDDNLVAKISDFGLAKLLLTNQTRTNTGIRGTRGYVAPEWFKNIGISTKVDVYSFGVILLELVCCRRNVELEVVDEEQTIVTYWANDCYRSGRIDLLVEGDDEAIYNIKKVERFVTVALWCLQEDPSMRPNMLKVTQMLDGAVAIPSPPDLCSFISSLP |
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| Function | G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 [UniProtKB/Swiss-Prot:Q7FAZ3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0004050 | OsLima_04g0004050.01 | Chr04 | 7135965 | 7143361 | - | NAM | ||
| CDS seq | atggttgctctgctactctttcccatgctgttgcagctactgtccccaacttgtgcacaaactcagaagaacatcacattgggctccactttggcaccccagagtcctgcctcttcatggctatcaccctctggcgacttcgcatttggcttccgacctgtagagggcaacacctccttctacctcatcgccgtctggttcaacaagattagcgataagacagttgtctggtatgccaaaaatactgaccaagatccatcgatagtagaagtgccatctgattcttttctccaactcactaatgatggtgcactctcactgaaagaccggtctggtcaggagggctggaatccccaggttaccagtgtggcatatgctagcatgcgcgacaccggcaattttgtgctccttggtgcagacggcacgacaaagtggcagacctttgacatgccgtcagacaccatcttgcctactcaggtgataccttgcaacaagactcgcaacaagtcactccgtgcccgactcgacatcgatgactactccagtggtcggtttctccttgatgtgcaaactgatggaaaccttgccctgtatcttgttgctgttccctctggatccaaataccagcaatattggtccactgacacgactggaaatggctcagagttggtattcagtgagactgggaaggtatactttgcactgacagatggtacacagatcaacatctcatcaggtgcaggaattggatcaatggcagactacttccatcgcgccacactggaccctgacggtgttttccggcaatatgtgtacccgaagaaagcgaatgcaggcatcctaggtggtgagacatggacagcagtgagcatgcagccccagaatatctgccatgccatagtttcagatgttggcagtggcgtctgtgggttcaacagttactgcacctttgatggcaccaggaatcagattgcaagctgccaatgcccaccatggtacaagttcttcgatgagcagaagaagtacaaagggtgtttgctctacttacatgacgaatgtagcaagcaaatcatccattgtgacataaagccgcagaatatccttcttgatgacaaccttgtggccaagatttcagactttggcctagcaaagcttcttttgacaaaccaaacaaggacaaacaccggtattcggggtactcgaggttatgttgcacctgagtggttcaagaacattgggatctctaccaaggttgatgtttatagcttcggagtgatactactagagcttgtttgctgtaggaggaatgtcgagctagaggttgtcgatgaggaacagacgatagtgacttactgggccaatgactgctaccggtctgggaggattgatttgctggtagagggcgatgatgaggcgatctacaatattaagaaggtggaaagatttgtgacagtggcattgtggtgccttcaggaggacccaagcatgcgacctaacatgctaaaggtgacacaaatgcttgatggtgcagttgcaatccccagtcctcctgatctctgttccttcatcagctcacttccatag
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| Protein seq | MVALLLFPMLLQLLSPTCAQTQKNITLGSTLAPQSPASSWLSPSGDFAFGFRPVEGNTSFYLIAVWFNKISDKTVVWYAKNTDQDPSIVEVPSDSFLQLTNDGALSLKDRSGQEGWNPQVTSVAYASMRDTGNFVLLGADGTTKWQTFDMPSDTILPTQVIPCNKTRNKSLRARLDIDDYSSGRFLLDVQTDGNLALYLVAVPSGSKYQQYWSTDTTGNGSELVFSETGKVYFALTDGTQINISSGAGIGSMADYFHRATLDPDGVFRQYVYPKKANAGILGGETWTAVSMQPQNICHAIVSDVGSGVCGFNSYCTFDGTRNQIASCQCPPWYKFFDEQKKYKGCLLYLHDECSKQIIHCDIKPQNILLDDNLVAKISDFGLAKLLLTNQTRTNTGIRGTRGYVAPEWFKNIGISTKVDVYSFGVILLELVCCRRNVELEVVDEEQTIVTYWANDCYRSGRIDLLVEGDDEAIYNIKKVERFVTVALWCLQEDPSMRPNMLKVTQMLDGAVAIPSPPDLCSFISSLP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.051954 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0201900 | RBH | 1.579237 | 0.708992 | 0.943180 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g12540 | RBH | 0.870426 | 0.388655 | 0.241632 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0201900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0004090 | RBH | 0.171192 | 1.355087 | 1.554008 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0004610 | RBH | 0.150174 | 0.0 | 0.937897 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0004120 | RBH | 0.000000 | 0.0 | 2.201878 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0004210 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0004110 | RBH | 1.399158 | 2.865521 | 2.396393 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0102200 | RBH | 1.427255 | 2.6511795 | 0.5851735 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0004240 | RBH | 0.091625 | 0.000000 | 0.344134 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0106800 | RBH | 2.4430375 | 4.547392 | 8.6170475 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0004290 | RBH | 0.322434 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0004130 | RBH | 1.967082 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0003990 | RBH | 0.354670 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0004140 | RBH | 0.000000 | 0.600290 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G004390 | RBH | 0.023843 | 0.190517 | 0.767577 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0004120 | RBH | 0.0 | 3.115096 | 0.309264 |
