Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0003120 | OGI:04017890 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:5428410-5430406 | ||||||||
| Gene Symbol | CYP99A2, OsCYP99A2 | ||||||||||
| DNA seq | aagatcaacagatcaagtcttggtgtcggcttatacagctgactgatcatggcatggcgaaagcatatAaaagggccattagttcatgcagttcTtcgccaagcaaaactgccaagtaaacctactcaccaataatccatcctcgaatcctcgatttatcatggagataaactcggcagccaccctcaccctcgtctctctcctcaccctgcccattcttctggcgttgctgacccgcaagtcgtcgtcaaagaagaggaagcctccagggccatggaacctccccttgatcggcggcctcctccacctcctccggtcgcatccgcaggtcgcgctccgcgagctcgccagcaagtacggcccggtgatgttcctccggatggggcagatcgacacggtcgtcgtctcctcgccggcggcagcgcaggaggtgctccgcgacaaggacgtcatgttcgcgtcgcggccgagcctcctcgtctcggagatcttctgctacgacaacctcgacgtcggcttcgcgccctacggcgcctactggcggatgctgcgcaagctctgcacggtggagctcctcagcaccaaggtggtgcggcagctcgcgccggtcaggaacgacgagacgctgaccctcgtcaggaacatcgaggccgcctcctcctgccatggcggcggcggcggcaagaagccggtcaccctcgccaggctgctcacgacgtgcacgaacacgatcaccgccaaggcggcgttcgggcaggcgtgcggcgtcgagctccaggagcagttcttgacggctctggacgtcgggctcaagttcagcggcggattctgcttcggcgacctcttcccgtcgctgcggttcatcgacgccatgaccgggctgaggagccgcctgtggcgagcacgcgggcagctggactccgtcttcgacaagatcatcgctcagtgcgaggagcatcagggtgattcccttgtcaacgtccttctcaggatcagagatcggggcgacctcgaattccccttcggcacaacgaacatcaaggcaattatactggtaataatttatttactggtgaatatatagcactaattaagatgttattttttctacattgttgttcatgtagtcgatttcattgtgcaggatatgttcacgggagggacagagacgacgtcgtcggccgcggagtgggtcatgtcggagctcatgaggaaccctgaggtaatggccaaggtacaggccgaggtgcggcgagtgttcgacaacaagagcccacaagaccatgagggcctgattgacaacctacgctacatgaagatggtgatcaaggagactatgaggttgaatccagtgttgccgctgctgatgccccatctctgccgggagacctgcgacattggtggttatgaggtcgtggagggtaccagggtggtgatcaattcgtgggcgatggcgaggagccccgagtactgggatgacgcggaggagtttaagccagagagatttgaggatggcatggcagactacaaaggctcccgttttgagtacttgccgtttggaaccgggaggaggagatgccctggtgATaTACATTTGGTATGGTCTTGCTGGAGCTCATCGTGGCACGCCTTCTCTACTACTTCGATTGGAGCCTCCCTGCCGGAATGCAGCCGGATGATGTTGACATGGACTTCGTCGTCACCGCCACAACTAGGAGAAAGAACCATCTTCAGCTAGTGGCGTCGCCATATAAGTTGGCTCCTATCCAAATCTGATGGATATACGGCTCCTACCCAAAGCTGATGGATGTATCAGTGTGTTTGTTCTTTTCTTATCATAGGTGTATTTGTTATTCGCGTGTTTGTGTACCTTGTAAGGGTGCACGTAATGTTTGTCCCCGGATAATGGACAAACAAATAATAATATtgtgaacaatatcatgtactactacgtatttatttaaagttacaaaatatttgataattattaagaattc
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| CDS seq | atgcagttcTtcgccaagcaaaactgccaagtaaacctactcaccaataatccatcctcgaatcctcgatttatcatggagataaactcggcagccaccctcaccctcgtctctctcctcaccctgcccattcttctggcgttgctgacccgcaagtcgtcgtcaaagaagaggaagcctccagggccatggaacctccccttgatcggcggcctcctccacctcctccggtcgcatccgcaggtcgcgctccgcgagctcgccagcaagtacggcccggtgatgttcctccggatggggcagatcgacacggtcgtcgtctcctcgccggcggcagcgcaggaggtgctccgcgacaaggacgtcatgttcgcgtcgcggccgagcctcctcgtctcggagatcttctgctacgacaacctcgacgtcggcttcgcgccctacggcgcctactggcggatgctgcgcaagctctgcacggtggagctcctcagcaccaaggtggtgcggcagctcgcgccggtcaggaacgacgagacgctgaccctcgtcaggaacatcgaggccgcctcctcctgccatggcggcggcggcggcaagaagccggtcaccctcgccaggctgctcacgacgtgcacgaacacgatcaccgccaaggcggcgttcgggcaggcgtgcggcgtcgagctccaggagcagttcttgacggctctggacgtcgggctcaagttcagcggcggattctgcttcggcgacctcttcccgtcgctgcggttcatcgacgccatgaccgggctgaggagccgcctgtggcgagcacgcgggcagctggactccgtcttcgacaagatcatcgctcagtgcgaggagcatcagggtgattcccttgtcaacgtccttctcaggatcagagatcggggcgacctcgaattccccttcggcacaacgaacatcaaggcaattatactggatatgttcacgggagggacagagacgacgtcgtcggccgcggagtgggtcatgtcggagctcatgaggaaccctgaggtaatggccaaggtacaggccgaggtgcggcgagtgttcgacaacaagagcccacaagaccatgagggcctgattgacaacctacgctacatgaagatggtgatcaaggagactatgaggttgaatccagtgttgccgctgctgatgccccatctctgccgggagacctgcgacattggtggttatgaggtcgtggagggtaccagggtggtgatcaattcgtgggcgatggcgaggagccccgagtactgggatgacgcggaggagtttaagccagagagatttgaggatggcatggcagactacaaaggctcccgttttgagtacttgccgtttggaaccgggaggaggagatgccctggtgATaTACATTTGGTATGGTCTTGCTGGAGCTCATCGTGGCACGCCTTCTCTACTACTTCGATTGGAGCCTCCCTGCCGGAATGCAGCCGGATGATGTTGACATGGACTTCGTCGTCACCGCCACAACTAGGAGAAAGAACCATCTTCAGCTAG
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| Protein seq | MQFFAKQNCQVNLLTNNPSSNPRFIMEINSAATLTLVSLLTLPILLALLTRKSSSKKRKPPGPWNLPLIGGLLHLLRSHPQVALRELASKYGPVMFLRMGQIDTVVVSSPAAAQEVLRDKDVMFASRPSLLVSEIFCYDNLDVGFAPYGAYWRMLRKLCTVELLSTKVVRQLAPVRNDETLTLVRNIEAASSCHGGGGGKKPVTLARLLTTCTNTITAKAAFGQACGVELQEQFLTALDVGLKFSGGFCFGDLFPSLRFIDAMTGLRSRLWRARGQLDSVFDKIIAQCEEHQGDSLVNVLLRIRDRGDLEFPFGTTNIKAIILDMFTGGTETTSSAAEWVMSELMRNPEVMAKVQAEVRRVFDNKSPQDHEGLIDNLRYMKMVIKETMRLNPVLPLLMPHLCRETCDIGGYEVVEGTRVVINSWAMARSPEYWDDAEEFKPERFEDGMADYKGSRFEYLPFGTGRRRCPGDIHLVWSCWSSSWHAFSTTSIGASLPECSRMMLTWTSSSPPQLGERTIFS |
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| Function | Cytochrome P450 99A2 [UniProtKB/Swiss-Prot:Q7X7X4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0003120 | OsLima_04g0003120.01 | Chr04 | 5428410 | 5430406 | + | NAM | ||
| CDS seq | atgcagttcTtcgccaagcaaaactgccaagtaaacctactcaccaataatccatcctcgaatcctcgatttatcatggagataaactcggcagccaccctcaccctcgtctctctcctcaccctgcccattcttctggcgttgctgacccgcaagtcgtcgtcaaagaagaggaagcctccagggccatggaacctccccttgatcggcggcctcctccacctcctccggtcgcatccgcaggtcgcgctccgcgagctcgccagcaagtacggcccggtgatgttcctccggatggggcagatcgacacggtcgtcgtctcctcgccggcggcagcgcaggaggtgctccgcgacaaggacgtcatgttcgcgtcgcggccgagcctcctcgtctcggagatcttctgctacgacaacctcgacgtcggcttcgcgccctacggcgcctactggcggatgctgcgcaagctctgcacggtggagctcctcagcaccaaggtggtgcggcagctcgcgccggtcaggaacgacgagacgctgaccctcgtcaggaacatcgaggccgcctcctcctgccatggcggcggcggcggcaagaagccggtcaccctcgccaggctgctcacgacgtgcacgaacacgatcaccgccaaggcggcgttcgggcaggcgtgcggcgtcgagctccaggagcagttcttgacggctctggacgtcgggctcaagttcagcggcggattctgcttcggcgacctcttcccgtcgctgcggttcatcgacgccatgaccgggctgaggagccgcctgtggcgagcacgcgggcagctggactccgtcttcgacaagatcatcgctcagtgcgaggagcatcagggtgattcccttgtcaacgtccttctcaggatcagagatcggggcgacctcgaattccccttcggcacaacgaacatcaaggcaattatactggatatgttcacgggagggacagagacgacgtcgtcggccgcggagtgggtcatgtcggagctcatgaggaaccctgaggtaatggccaaggtacaggccgaggtgcggcgagtgttcgacaacaagagcccacaagaccatgagggcctgattgacaacctacgctacatgaagatggtgatcaaggagactatgaggttgaatccagtgttgccgctgctgatgccccatctctgccgggagacctgcgacattggtggttatgaggtcgtggagggtaccagggtggtgatcaattcgtgggcgatggcgaggagccccgagtactgggatgacgcggaggagtttaagccagagagatttgaggatggcatggcagactacaaaggctcccgttttgagtacttgccgtttggaaccgggaggaggagatgccctggtgATaTACATTTGGTATGGTCTTGCTGGAGCTCATCGTGGCACGCCTTCTCTACTACTTCGATTGGAGCCTCCCTGCCGGAATGCAGCCGGATGATGTTGACATGGACTTCGTCGTCACCGCCACAACTAGGAGAAAGAACCATCTTCAGCTAG
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| Protein seq | MQFFAKQNCQVNLLTNNPSSNPRFIMEINSAATLTLVSLLTLPILLALLTRKSSSKKRKPPGPWNLPLIGGLLHLLRSHPQVALRELASKYGPVMFLRMGQIDTVVVSSPAAAQEVLRDKDVMFASRPSLLVSEIFCYDNLDVGFAPYGAYWRMLRKLCTVELLSTKVVRQLAPVRNDETLTLVRNIEAASSCHGGGGGKKPVTLARLLTTCTNTITAKAAFGQACGVELQEQFLTALDVGLKFSGGFCFGDLFPSLRFIDAMTGLRSRLWRARGQLDSVFDKIIAQCEEHQGDSLVNVLLRIRDRGDLEFPFGTTNIKAIILDMFTGGTETTSSAAEWVMSELMRNPEVMAKVQAEVRRVFDNKSPQDHEGLIDNLRYMKMVIKETMRLNPVLPLLMPHLCRETCDIGGYEVVEGTRVVINSWAMARSPEYWDDAEEFKPERFEDGMADYKGSRFEYLPFGTGRRRCPGDIHLVWSCWSSSWHAFSTTSIGASLPECSRMMLTWTSSSPPQLGERTIFS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0180400 | RBH | 0.000000 | 1.717842 | 1.536421 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g10160 | RBH | 0.645993 | 1.054688 | 0.361032 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0180400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0002980 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0003580 | RBH | 0.0 | 0.0 | 1.512524 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0003050 | RBH | 0.220573 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0003280 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0003210 | RBH | 0.0 | 4.536385 | 2.896221 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0080900 | RBH | 0.0840825 | 1.2770105 | 0.0507235 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0003290 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0083200 | RBH | 0.268758 | 8.1513945 | 0.089878 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0003030 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0003320 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0003170 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0003030 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0003100 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G003410 | RBH | 0.0 | 0.0 | 0.932325 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0003190 | RBH | 0.0 | 4.154552 | 1.237384 |
