Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0001810 | OGI:04011210 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:3065717-3067957 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttatttccgatgaggatcgacgcgaaatatgccggcatgttcaaccaggatccaaacgattgtcgtgagttcaccaccacggctgagctgcttggcgtgagaatctcttgtacacttgacggacgcgttaatcagcagacgcacccactccaagaagatgtgttcaagcagttgcgaccatttattggggtggtcgtacatcgggcacccgttcaggattttgctcaattttggaaacatctgtgcaaattttgcctcgtacgagtattcagatttgggaaatttgacccagtaattacgatgtagccattgcagcaaatgatcagctagtttaatcccatctgacagagcaatactaaaactataaagctcggttatatattctggcttccaagccaagcttccattcttctcgattctccggttttcttgttatgttctcctccttcttgaacatgaacatgatatcagtaagacacttctctcttgtcgtagagctacagctgagagatcttttctcgctccataatttttccagagctgacagggttgtatcgtacaggctgcgtagcttgaggcctggtagcatgccggggagcaccgcgacgaggaacatcatgtaatccgacaatatcttgatcaccttcatatcctgcttggtctcggatgatgctgtatgttgttcagcttcagagtgcaagaagacgacgtccgtggcgatgtgcaagataagaatggactcttgaaattcagggatgaactcgagaacttcttctatatcccgaagccccttaacacgactgccctcatcgatgggatctgccttcaatttcgtcgcctccttcttcagtttctcctgctcaactgggtacgctgaacacatatatttccaaatacagccgaacaacttctccttgacataacattctgaaatatgaattcccctcaaatagtggtattcgtactctatccactggtcctctgacgcaacctttttcaccacagagcttaagtagttccttgttgtcatgtcctgcttgtcacgagtgcactcatgcaacaagttgtactgcccaaattttccactccacttcctgtagctacttggctccttgcctaggagcaaagaaagatctaggctgacgatgagacgacggagcatgcgccatttcccagagcacagaaatgcatgatgaagccataagcgtggcctatcattcaggagccagtaggtccatgtcgacgctactgctctgagaagccatctgatatccaggagaacggtgccggccagcaagacataggtgatcagcacatcggccatccgctgccctaccttgctgtcgaaccaaaacagcaggaaagcagcggttgtaatgaccggcgagacgaaacgaatggcatagccatgccatgtgtgcgccatggctgccttggtgtagaggatgtcgtacatgagggagagctccatgttgaccacctcgtacatcatctcccagccaccactagggaatatttcttgtctcctggcaacatattcagggagtagatgctcgtcgatggaagaatcgacgaaggctcctttggtgatgtcgagcaggccatgagcaacaagcagggttcttcttcattgtcctgccagcagccccaactgctcggacgcctaacatttctcaagcttcgtctacctgtctccttcctcttattcttctccgccttgactgagcttcgcatgttttctaggttggcgagcttcattgcctctgccctctcccaatacttgacaatgcccaagatgaacatggctacagagacccagctgaacatggtgccagtgccacttctggcgacaatattctggaacatggcatatactactccgatcacctgaaataacatttccaacatctggcgagtggaaagaacgttgtcctccagggagtaggcggtgatgttgtccggaccaccggcatgtagcagcaggaacgccccccagaaggtcaccagctgcagctcctgaggcgtgcttctgagggccagcttgccgagcgcgtacgttgcgacccaacgaccgagttggctcgccgcccacaggatggctatctgcacgccaatcgcattacgacggcggaatccggccaggaagacgacgatgacatgcgctgtgaagctcaacactaccaacgaccggatcacccacgaattcacgaagaacaccgtgctaatCATCcatccagccat
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| CDS seq | atgtacgaggtggtcaacatggagctctccctcatgtacgacatcctctacaccaaggcagccatggcgcacacatggcatggctatgccattcgtttcgtctcgccggtcattacaaccgctgctttcctgctgttttggttcgacagcaaggtagggcagcggatggccgatgtgctgatcacctatgtcttgctggccggcaccgttctcctggatatcagatggcttctcagagcagtagcgtcgacatggacctactggctcctgaatgataggccacgcttatggcttcatcatgcatttctgtgctctgggaaatggcgcatgctccgtcgtctcatcgtcagcctagatctttctttgctcctaggcaaggagccaagtagctacaggaagtggagtggaaaatttgggcagtacaacttgttgcatgagtgcactcgtgacaagcaggacatgacaacaaggaactacttaagctctgtggtgaaaaaggttgcgtcagaggaccagtggatagagtacgaataccactatttgaggggaattcatatttcagaatgttatgtcaaggagaagttgttcggctgtatttggaaatatatgtgttcagcgtacccagttgagcaggagaaactgaagaaggaggcgacgaaattgaaggcagatcccatcgatgagggcagtcgtgttaaggggcttcgggatatagaagaagttctcgagttcatccctgaatttcaagagtccattcttatcttgcacatcgccacggacgtcgtcttcttgcactctgaagctgaacaacatacagcatcatccgagaccaagcaggatatgaaggtgatcaagatattgtcggattacatgatgttcctcgtcgcggtgctccccggcatgctaccaggcctcaagctacgcagcctgtacgatacaaccctgtcagctctggaaaaattatggagcgagaaaagatctctcagctgtagctctacgacaagagagaagtgtcttactgatatcatgttcatgttcaagaaggaggagaacataacaagaaaaccggagaatcgagaagaatggaagcttggcttggaagccagaatatataaccgagctttatatattgctctgtcagatgggattaaactagctgatcatttgctgcaatggctacatcgtaattactgggtcaaatttcccaaatctgaatactcgtacgaggcaaaatttgcacagatgtttccaaaattgagcaaaatcctgaacgggtgcccgatgtacgaccaccccaataaatggtcgcaactgcttgaacacatcttcttggagtgggtgcgtctgctgattaacgcgtccgtcaagtgtacaagagattctcacgccaagcagctcagccgtggtggtgaactcacgacaatcgtttggatcctggttgaacatgccggcatatttcgcgtcgatcctcatcggaaataa
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| Protein seq | MYEVVNMELSLMYDILYTKAAMAHTWHGYAIRFVSPVITTAAFLLFWFDSKVGQRMADVLITYVLLAGTVLLDIRWLLRAVASTWTYWLLNDRPRLWLHHAFLCSGKWRMLRRLIVSLDLSLLLGKEPSSYRKWSGKFGQYNLLHECTRDKQDMTTRNYLSSVVKKVASEDQWIEYEYHYLRGIHISECYVKEKLFGCIWKYMCSAYPVEQEKLKKEATKLKADPIDEGSRVKGLRDIEEVLEFIPEFQESILILHIATDVVFLHSEAEQHTASSETKQDMKVIKILSDYMMFLVAVLPGMLPGLKLRSLYDTTLSALEKLWSEKRSLSCSSTTREKCLTDIMFMFKKEENITRKPENREEWKLGLEARIYNRALYIALSDGIKLADHLLQWLHRNYWVKFPKSEYSYEAKFAQMFPKLSKILNGCPMYDHPNKWSQLLEHIFLEWVRLLINASVKCTRDSHAKQLSRGGELTTIVWILVEHAGIFRVDPHRK |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0001810 | OsLima_04g0001810.02 | Chr04 | 3065717 | 3067205 | - | NAM | ||
| CDS seq | atgtacgaggtggtcaacatggagctctccctcatgtacgacatcctctacaccaaggcagccatggcgcacacatggcatggctatgccattcgtttcgtctcgccggtcattacaaccgctgctttcctgctgttttggttcgacagcaaggtagggcagcggatggccgatgtgctgatcacctatgtcttgctggccggcaccgttctcctggatatcagatggcttctcagagcagtagcgtcgacatggacctactggctcctgaatgataggccacgcttatggcttcatcatgcatttctgtgctctgggaaatggcgcatgctccgtcgtctcatcgtcagcctagatctttctttgctcctaggcaaggagccaagtagctacaggaagtggagtggaaaatttgggcagtacaacttgttgcatgagtgcactcgtgacaagcaggacatgacaacaaggaactacttaagctctgtggtgaaaaaggttgcgtcagaggaccagtggatagagtacgaataccactatttgaggggaattcatatttcagaatgttatgtcaaggagaagttgttcggctgtatttggaaatatatgtgttcagcgtacccagttgagcaggagaaactgaagaaggaggcgacgaaattgaaggcagatcccatcgatgagggcagtcgtgttaaggggcttcgggatatagaagaagttctcgagttcatccctgaatttcaagagtccattcttatcttgcacatcgccacggacgtcgtcttcttgcactctgaagctgaacaacatacagcatcatccgagaccaagcaggatatgaaggtgatcaagatattgtcggattacatgatgttcctcgtcgcggtgctccccggcatgctaccaggcctcaagctacgcagcctgtacgatacaaccctgtcagctctggaaaaattatggagcgagaaaagatctctcagctgtagctctacgacaagagagaagtgtcttactgatatcatgttcatgttcaagaaggaggagaacataacaagaaaaccggagaatcgagaagaatggaagcttggcttggaagccagaatatataaccgagctttatatattgctctgtcagatgggattaaactagctgatcatttgctgcaatggctacatcgtaattactgggtcaaatttcccaaatctgaatactcgtacgaggcaaaatttgcacagatgtttccaaaattgagcaaaatcctgaacgggtgcccgatgtacgaccaccccaataaatggtcgcaactgcttgaacacatcttcttggagtgggtgcgtctgctgattaacgcgtccgtcaagtgtacaagagattctcacgccaagcagctcagccgtggtggtgaactcacgacaatcgtttggatcctggttgaacatgccggcatatttcgcgtcgatcctcatcggaaataa
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| Protein seq | MYEVVNMELSLMYDILYTKAAMAHTWHGYAIRFVSPVITTAAFLLFWFDSKVGQRMADVLITYVLLAGTVLLDIRWLLRAVASTWTYWLLNDRPRLWLHHAFLCSGKWRMLRRLIVSLDLSLLLGKEPSSYRKWSGKFGQYNLLHECTRDKQDMTTRNYLSSVVKKVASEDQWIEYEYHYLRGIHISECYVKEKLFGCIWKYMCSAYPVEQEKLKKEATKLKADPIDEGSRVKGLRDIEEVLEFIPEFQESILILHIATDVVFLHSEAEQHTASSETKQDMKVIKILSDYMMFLVAVLPGMLPGLKLRSLYDTTLSALEKLWSEKRSLSCSSTTREKCLTDIMFMFKKEENITRKPENREEWKLGLEARIYNRALYIALSDGIKLADHLLQWLHRNYWVKFPKSEYSYEAKFAQMFPKLSKILNGCPMYDHPNKWSQLLEHIFLEWVRLLINASVKCTRDSHAKQLSRGGELTTIVWILVEHAGIFRVDPHRK
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0001810 | OsLima_04g0001810.01 | Chr04 | 3067205 | 3067957 | - | NAM | ||
| CDS seq | atggctggatgGATGattagcacggtgttcttcgtgaattcgtgggtgatccggtcgttggtagtgttgagcttcacagcgcatgtcatcgtcgtcttcctggccggattccgccgtcgtaatgcgattggcgacaatgaagaagaaccctgcttgttgctcatggcctgctcgacatcaccaaaggagccttcgtcgattcttccatcgacgagcatctactccctgaatatgttgccaggagacaagaaatattccctagtggtggctgggagatga
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| Protein seq | MAGWMISTVFFVNSWVIRSLVVLSFTAHVIVVFLAGFRRRNAIGDNEEEPCLLLMACSTSPKEPSSILPSTSIYSLNMLPGDKKYSLVVAGR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0150300 | SBH | 0.000000 | 0.202303 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g06590 | SBH | 0.000000 | 0.158983 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0150300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0001790 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0001920 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0001790 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0001950 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0001950 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0049900 | SBH | 0.256192 | 0.054584 | 0.058179 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0001860 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0051700 | SBH | 0.246948 | 0.025101 | 0.166474 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0001920 | SBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0002190 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0002020 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0001710 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0001790 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G002040 | SBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0001970 | SBH | 0.0 | 0.0 | 0.0 |
