Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0001730 | OGI:04008340 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:2832441-2834170 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgctggccgccggacgcacgccgcaggaggaggagctggtgacgctctgggctgcgttcatgctgctacccgctggtatgccggacaaaatgaccgcctatgccttggaagacggcgctctcgtttcaccagagggtaaacgtgcttcttcttcagccgattggcaagccggataatgaccaaatcctgctggttgctcatggcaatctccatgtcaccatgggtgccttcatagataatttgcatgatgccgaggaacaagaaatactgcctaaaacatgggatgaaaacaggacactgtacaaggtggttgagatggagctctccctcatgtatgacatcctctacaccaaggcagcgatggtgcacacctggggtggctacgccatccgtgtcgtctttccgttcaccggagccaccgcgttcctgttgttctggttccacagcgaggatggtcagtcgacggctgatgtcttcatcacctatatattgctggccggcaccatcattctggatatcatatggcttctcaaagcactggtgtcgacgtggacctattctttcctgaatgataggccacgaatttggcttcatcacgcacttctgtgctcagggaaatggcgactactccatcgtctcatcgtctcgctgaatctatttcggttccttctcaataaggagccaaccagctataggatgtggtccggaaccatgggggcagtacaacatattacacgagtgcactagtaatgatcgagatcagaccaataccttcttgctgaggaggatattctcccaattggtgaagatgagcaattttacagtccttcaggagggactatgaggtaccactttttctattgtaaatttggtacctcttgttacctaggtaccataaggtaccaaattttacactaaatttttggtacctcatggtacctctcctcaaggatcgtaaaattgctcggtgaagatagttccagaggataattggatggagtaccaataccactccttgaagggctttcgtatgtcatcagatgtaagcaagcatttgttcgaaagtatatggaaacctcttaagtcagcgtaccctcctactgttcctatcgacaaagccaaagcaactttgcctccggcgccatttccactacagcatacaggtcgagcagatccggcagaaatgatgccgccgacaaaacaaattgtacgccagcgggaattagaagatgctgatctgaacttctcacctgcatgccaagagagcatcctgatctggcacaatgccatggacgtcttcctcttatgcagccatcaatactcatccttatccaaagaagtgcaggcgatcaagctgttgtcagattacatggtgttcctggtcgcggtgcgcccaaatatggtaccgggccttaagctacgcagtctgtacgtagcagttggttacgctctaactaatgacgatgaaatattgcccaaggaaggatatcactgtaacttgacagagaaaaaggagaagctggccaatcgcctagtagaaatggaacagaagccaagctcaaagaatgcgccgcgcagcaaatggagacccggtgtcagcggacacgtactggttcaggccagaaaaggcaagtattctttacgacaagaatataattctctcagacggaacgagtttcgcgcacgtgctgctaagtcgtataggcccgaacccatataccccgcatga
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| CDS seq | atgctggccgccggacgcacgccgcaggaggaggagctggtgacgctctgggctgcgttcatgctgctacccgctggtatgccggacaaaatgaccgcctatgccttggaagacggcgctctcccgattggcaagccggataatgaccaaatcctgctggttgctcatggcaatctccatgtcaccatgggtgccttcatagataatttgcatgatgccgaggaacaagaaatactgcctaaaacatgggatgaaaacaggacactgtacaaggtggttgagatggagctctccctcatgtatgacatcctctacaccaaggcagcgatggtgcacacctggggtggctacgccatccgtgtcgtctttccgttcaccggagccaccgcgttcctgttgttctggttccacagcgaggatgcgtaccctcctactgttcctatcgacaaagccaaagcaactttgcctccggcgccatttccactacagcatacaggtcgagcagatccggcagaaatgatgccgccgacaaaacaaattgtacgccagcgggaattagaagatgctgatctgaacttctcacctgcatgccaagagagcatcctgatctggcacaatgccatggacgtcttcctcttatgcagccatcaatactcatccttatccaaagaagtgcaggcgatcaagctgttgtcagattacatggtgttcctggtcgcggtgcgcccaaatatggtaccgggccttaagctacgcagtctgtacgtagcagttggttacgctctaactaatgacgatgaaatattgcccaaggaaggatatcactgtaacttgacagagaaaaaggagaagctggccaatcgcctagtagaaatggaacagaagccaagctcaaagaatgcgccgcgcagcaaatggagacccggtgtcagcggacacgtactggttcaggccagaaaaggcaagtattctttacgacaagaatataattctctcagacggaacgagtttcgcgcacgtgctgctaagtcgtataggcccgaacccatataccccgcatga
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| Protein seq | MLAAGRTPQEEELVTLWAAFMLLPAGMPDKMTAYALEDGALPIGKPDNDQILLVAHGNLHVTMGAFIDNLHDAEEQEILPKTWDENRTLYKVVEMELSLMYDILYTKAAMVHTWGGYAIRVVFPFTGATAFLLFWFHSEDAYPPTVPIDKAKATLPPAPFPLQHTGRADPAEMMPPTKQIVRQRELEDADLNFSPACQESILIWHNAMDVFLLCSHQYSSLSKEVQAIKLLSDYMVFLVAVRPNMVPGLKLRSLYVAVGYALTNDDEILPKEGYHCNLTEKKEKLANRLVEMEQKPSSKNAPRSKWRPGVSGHVLVQARKGKYSLRQEYNSLRRNEFRARAAKSYRPEPIYPA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0001730 | OsLima_04g0001730.01 | Chr04 | 2832441 | 2834170 | + | NAM | ||
| CDS seq | atgctggccgccggacgcacgccgcaggaggaggagctggtgacgctctgggctgcgttcatgctgctacccgctggtatgccggacaaaatgaccgcctatgccttggaagacggcgctctcccgattggcaagccggataatgaccaaatcctgctggttgctcatggcaatctccatgtcaccatgggtgccttcatagataatttgcatgatgccgaggaacaagaaatactgcctaaaacatgggatgaaaacaggacactgtacaaggtggttgagatggagctctccctcatgtatgacatcctctacaccaaggcagcgatggtgcacacctggggtggctacgccatccgtgtcgtctttccgttcaccggagccaccgcgttcctgttgttctggttccacagcgaggatgcgtaccctcctactgttcctatcgacaaagccaaagcaactttgcctccggcgccatttccactacagcatacaggtcgagcagatccggcagaaatgatgccgccgacaaaacaaattgtacgccagcgggaattagaagatgctgatctgaacttctcacctgcatgccaagagagcatcctgatctggcacaatgccatggacgtcttcctcttatgcagccatcaatactcatccttatccaaagaagtgcaggcgatcaagctgttgtcagattacatggtgttcctggtcgcggtgcgcccaaatatggtaccgggccttaagctacgcagtctgtacgtagcagttggttacgctctaactaatgacgatgaaatattgcccaaggaaggatatcactgtaacttgacagagaaaaaggagaagctggccaatcgcctagtagaaatggaacagaagccaagctcaaagaatgcgccgcgcagcaaatggagacccggtgtcagcggacacgtactggttcaggccagaaaaggcaagtattctttacgacaagaatataattctctcagacggaacgagtttcgcgcacgtgctgctaagtcgtataggcccgaacccatataccccgcatga
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| Protein seq | MLAAGRTPQEEELVTLWAAFMLLPAGMPDKMTAYALEDGALPIGKPDNDQILLVAHGNLHVTMGAFIDNLHDAEEQEILPKTWDENRTLYKVVEMELSLMYDILYTKAAMVHTWGGYAIRVVFPFTGATAFLLFWFHSEDAYPPTVPIDKAKATLPPAPFPLQHTGRADPAEMMPPTKQIVRQRELEDADLNFSPACQESILIWHNAMDVFLLCSHQYSSLSKEVQAIKLLSDYMVFLVAVRPNMVPGLKLRSLYVAVGYALTNDDEILPKEGYHCNLTEKKEKLANRLVEMEQKPSSKNAPRSKWRPGVSGHVLVQARKGKYSLRQEYNSLRRNEFRARAAKSYRPEPIYPA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0139100 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g05760 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0139100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0001630 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0001630 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0001710 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0001790 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0001650 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0040400 | SBH | 0.0639655 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0001970 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0052500 | SBH | 0.0592445 | 0.0124335 | 0.019072 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0002010 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0001880 | RBH | 0.0 | 1.321534 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0001820 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0001670 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0001700 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G001840 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0001810 | RBH | 0.0 | 0.0 | 0.0 |
