Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0000560 | OGI:04001770 | 12/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:775761-788502 | ||||||||
| Gene Symbol | PIC22, RGA3 | ||||||||||
| DNA seq | ctaacgacctatcgagattcgagcacccccacggagctcagaagcaccagccaagcaccataaggcgccttgaattacagccagcacactaggatttgcaccattaaacatgcaatcgctcccattgcttctagatttccaaaacaaattaagcgagttaaatcctttcttagcctactttcttgtgcccttcaaagccctagaccagcaactggagaagttgtttgtgtcaggagttggggagatggaagagaagcctaacctctataggatcaactttcaattctgaaggctaaaaacagagactaggatgtgttccattgtttcttcagcctagcaaggagatggccgtccaaccctggcttaacaaagAaatataaagagacgaggtgatgaagagatcctaaacagatcagaatacattggccttgtattgtatggtcgctcatctctcatgtctccaagggatgagcctgaagttacttggcaaggtcgacgtcatatgcactaccgctcgtcctctcctactacttgcgagccgtcacttgatttctccatgcaacattatttgtgtaacctgctatccgttgtcaagatttttttttgtttatgttctgcagaaatcaaacaaatacgttagatcagaattcagAaatagcacttcatgagttcaaagcatcacaatgctctcctataagcctgcaagagtatgacacttagctgcacctaaacaaaatatatggctagcaatgagatctctgcggcacaaaacagcatcaagacaaatgcaagggagttgcagggcaatactttgttccaggtctctgactgtttgttttagacacgttttatattctgcttcaaacctaaggtggtgactgatgtttgcagaaatgcagttcatgtttgggattttatcttgtatccacatgatttcctttttgttgttaccctctcccaatctgtaccatatgtttgttgcgatggacgcagggggtgtttcctcatttgtaataagtatgcagattaccatgtcactttactggttaagcaactattgtgtatttatcaaaactctgagcagttttttatacatccaacgctaaagaacaaaacaaatagctaataatctgttgatcctaattattcaaatgctagatcacaatctgaagcaaagagaatttcaagggagcacctggttaaggtgcaaaccgatgtgcgatacaaaatgctgcatacgaaattatgaatgcattttaagtgcccatcgacctatatgcatgctatttggtactcatgaaatttatcgtaaattttgttttggtacatgcattctaatgctattatggtgcatactctatatttagtagtttagaagtgtatatcacatAaacttcacaaatgtggctgtggccaccaacaaattttccaatcacatatttggatatagcagtatcaaggataaagaaactggttagctcatggctatatagccattgagcaatttttttcccggaactagagagctgcgaacaatcttagcaaccactaaaagaacttaatgtacagttcaaacttgtgtataaccctttataggggttgagagtttttcatcaaatttgtagaaggtacacctctatgactagtatacacatatctgattcctaatccataaacaacgaatatgcggccatatctaatgaaagccatggatttgagtaaaatttatcaactagtgaaaccattttatagagcctatgttacaagtccatcaagctagtggttggcttgattatcatctattaggcagatacaacttgggaaacatttcatatcatcactagtgaaaatgcatatttctgtgttcgaagagtcgaggaacatttcctgattcctgaattgtcaacgaaataaaatgcatgattatttgaaggcatacatttcacagctacataacaattagaggacaagtaagcaatcagcagcagctttaccttcatggtccatcagtgagctttggtgtgttaaggagcaattttcttgacaccacattgtcagttaactttggtggcaaccaacgagatgaagtgattccagtgacggtggtacactacccacaggaaaagattggaaatccttgcagtgtgatatgcttagtaccttgagagatgtgaggttcttaaagtttgctgggaaggatcctgctgtcagtttggggcatctctcgatcaccaatcgctttagggaaatgaaaatgtgcaaggaatcaagggaagcaaacaacagacagttgcatatgtacaattcagcaagtttcgggaagaaatcaatgtctgatggaactgaaagggatgttatattgggcagatcgatcatctccaaggagcatagcgaaggaagcgcgtagagagttccacttaacgtattgtctgttaagtcaaattgacataactgaagcctttgaagagaagtaaacgaacacaatcctttggtggcaaaaggtgtctcacgaccttctatttttaaagatatgacagattccaaatgtaactgatggaacagtccccagcaaagtatactaatattacgaacatcaagcgtgagcatatctgaccttggcgaagacaatctggcaagcctcaaataggatatcaatgctgtacgctccattgtaacatcactgacagaagggggcaatggaggaacctgaaccaaatttggacagtctttaagtgttagcttttggagatggggaaacggattgcctttcacttcaccagaccaatcaaataaacttggAaaatcatcgaaaacaagcattatcagggatggaaatggtacatcatcatcgccgtagaactcatgtccaatttgattaacagtgcacagttccttcatacatagatatttgagtgacggtaatagtcccaatggaggtaggatctccaaattcctgcagttaataaggtccaaggattgaagctgcttaagtgatgataactgcagccaactagggcatatggcaccttggtaccttttgatatggagtacttttatgctagagggtggctgtaggttttctaatattccagcatctgcatcaaggactagatttctacttgcagagttccattccagactgagcgccctaagatgtagtttcttgtacaactcggctttgctggctgcttCtttgcttaaaacattatcaaggccctttatttttagtttcccacggagatcttttaagcccttcagctcttccaaggtacatcctaccccctttttaacatggaattcaactgatccctgaaggtttacaagccgcccaatgccggacacctgtgcaatgaaccttgtggcaatgttaaggtgccgcaagttgaccagcatagttatgcctgcgggaagcttttcaagggaacacttgtgaaagcacaatgattcgaGgtgcagtagcttgctgactgactcaggaagcatattgagggtgcgagggagagataggtaacgcaggtgcactagttcaccaatcgagttaggcaactgtacaaagttagagcaactaaggtctaagacacgcaagttccttatcttcctgaagaattcatcttggaagcaacttgaggagaatataaatgatcttagaactatcaaggtacgcaaattttcaggtttgcagaagctcccaaggccttgtagtccatcttgggtgacagatacatagcgagcagttgatggcttctcagaaatcatgccatgctcaacacgaaggcattgatctgccgaaacagactgcgcgaggtcatggacaaggtcatgcatcacgtagtgtgtttcacacgcttccctgcgtacatcaaagaaggatcgcgaaagaagttcctcaaaataatcttctgccaggtcctccatatttttgtcagcactgttctgtgactgaacaaaaccttgggccatccagagttggatcaacactcttttgttaaatttatagttcctcggaaacaaactgcagaacgaaaagcactgcttgagtcgtcgaggcaggtaactgtaactcaattctagtacgggaagaatactatcgccataaagttctttgtccaagacattcatccaggtctttgtgctctttgtagctccaagcagccccccaagcatcttggcagccaatggcaatcctttgagcttggatgcgatgttcctcccaatttcttcaagctcctGggtggaatcatgagttgggcctccatggaaagcatatttcttgagcaaggaccacaaatcctcgatgtccaatacattcaggtggtatgtacaagatgcccccagcatggcaggcactgaggctgttgtagtagtcaccagaattctgctccccttttctgccgatgatagaggactgaggatctcttggcaggccatgctggtgaaggactcctccctgatgtcatcgagaacaagcaagaatctcttggacgctaccagttggctgagatggaactgaagcatgtcaagcgtaggttcactgtgaatagaagcagggtatgttgggttggttgaacgcaagatttgttcggtgatgtcaattttgtgaaaccctccactagtagagacactcgcccagagcctgagctcgaaatgctgcttaaccttggcatcatcatagactaacttggcgagtgttgtcttccccacgccccccatgccaacgattgggaggatgtcgtaagtagggtggtggtggtggcttgccggcggatcaatgagcattcgaacaatgtcagtgacctccttgtggcgcccaaacacaacctgatgatcgtcgtcagcaagcagcagggcagggagcgacggagcggtgggctcgagcttatgcatcgcggagaggaggctgcctgcctcgctcgcaacgaaatccaaatccttgaggaagcgggagcgagacgcgtggctgatgatgagcaggtagcggagattgacaagagagatgagcagattgcatctgacctcttgttgatgaggctggaacttgagcatgtggtactccaaatcgtcgaccatgtcttccatgccgtacagggcatcccgcacgcaggccgggagcgccgcgcgctgcccctcgtcccagaagagggcgaggatctgagccaggcggctagccagcagctgcgccttggctcggacaccggcggccagcgcccacctcatctgggcatcgtcgaacgactccatctgcaccctcagccgcgccatggcctgggaaagcgaccgcagcagcttcgcccaagcctccgccaccggatccacgccggattccaccgcccctgcccaccgacgcgaggggagagccatcgccggacgccggactacgagcgaggggggccaatttttgggggatttcgagcgtttcagaaagagaatgtgtgctgtgcgcaacaactttccccaaatctgctgctgatccttcctatctacgagtataaactcatgatcatccgatcaagtcaaagttagtcagtcagtcaacatgcggaccaaccggctttctcctcgatattttactttctttgcccttataaacacttattttatgaatagacccttaaaaccttactattattaagcatttctagagttggacggattgggattcggtgacattcctccgtgacattctcggtgacattgagtcactaacatgtgggtccaggcacatgtgggtcccacatgtcagtgactgaatgtcaccgagaatgtcatgggggaatgtcactgaatctgcgtctgagttggacacggttattattaagaaagttggtatgattaaatagtggagtgttgtgattggaggataattggaggtaggtggaaaaattgaatggtagaGggttataattggttgagaagataatattgctgaaaaaattattatactttaggacaaattctataagctagatgttgttatattataagacgggggagtatttcgttgtgatccaacatgacggcgttggtgttaatgacaacaacgtccgtcccccaaacgtccatgtggaaactaaatcacttatgtgaaaggatcctataattaaaaaagatatttacaaatagatcctcaatgcaattaacatttggtgttgagggcctatttgtaaatatttttaactgcAaatattttttttAaaaaaaattcttttataaatagatgctatatgccaatgactttggtatcgaccctctcacataagtaacttagcttccgtggagggctaatgagatggcgtcaatatcattggcatcgtcatattggatcacgacgctaataacgttgacccattccctgaagaagttttttcgaagctctatttataaaataagttttacaaaagttcgaaaatataaaaattatccaactcgcttctctcccctctcccctacacactattatgcaacctctgtgctacatgcgtagttcagaggggttgcataatgttaacaagaacatggagatacaaaatatgagggtgtgacatcctcagtggcggatccactgttggggctggttggtgcgccagccccacccacctctaatccatgcccctaattagttattaacaaatctaattagtcattagtgaagaaatttcccggacgacaaatatgcaggcttcctcactgcttctactatccaaactgataaaacagagcttactctgagtatacaaaacgatgcataaacaattgaaactgccaaattattttgtaaatacttttgtgatttctaagagtttgactaagttgcattaatgaaatgcaccggaggagggtgataccgaagaaagtaaaggtatccctcgtcttgtctagaggcctcgaacaaaaagaattggacaagaaacttcagctcctcacgcccctaaagtaaccagagacgtccggtgaaaactgagcaagagggactatcatactcaaaatcacgaaaattacctcatcgaatagaaggggagtcagttgagatatggtaagtggtatggagtgtcagaataggcgtatcgcatcttcctatcaaagaagaaacccagctgttggagtgcacactaacgctggtacacacccacatcgagaagcattaagcaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagcatatggaaaatgcatctcctcgtatatccatggatactcgcatagagcctcatgcaaccaatataagttggtaatgagacctattgttggtatttcttaaaaacattactagaaatattattcccaataatggcgcagaaatatttctggtatattatggttacagagttcatccgcaagcgcacggatataccattgtagcatttcacccgagagtattccaagggtattgtatttattttatcccgtgggaagatcatgtagagagaactcaactaataatttatataattgtgataatcatattctaagtaggggttaagataatccaagggtagagtgatacacaagcattagctacccattctcataatatattatctaagctaagtggaaagaaaagagaaAGaaaatctattcctatacttctaatatacatagtatacgtacattctagttaaccgatatactagctaatatcctctatccgatgccctcctggtactttgagaagccacccctgactgccgagttccttacgacagcccgtcatgaccatacaaccggggctaaatacggaggaataccctccccagggaattaacttaggattatataccggcgcggaggaatacccgtattgagctgtcaccatcagcggcccacctctcatccgcaatatataaccccaaataatgatatcccgtaatctagacaccacgtctaaactaccagatactactctaaaatcatcatcatgacatagagtaattgcataagcaaatactatacccgcaccaaagcatctcccagataagctagctgtatattcagtataacatgaacataatgtaaagtaggtactcatatactcggaaagtatttcaataccataaatgtatttagaagagtattctaataaaagtacaaagcttacaaaagagaagagaaaagctactagagccatacccgaacttttccgaaggcttccggactcctgatttctactctattcctattccaccagctagatactactaaactaaacttgagagaaatgagagagatattggttgaggtgtgtgagtgaagtgagaatgagagctccttttatagcctcccaatgacggttgtgacggttggaatggtcggtaataccctccaaccgtcattagggagcaatctcagccgtccaggggaaccctggatcaaatggagctgcggggggttcggccgaacccaatggttcggccgaaccattggctaggccgacctagcccaatttcggcaggcagcctccccttttgcttcacttcgtagacttgtgaattttggcccaattcattgtgtcaattctgagttcttggctcattcatacataagtttggttctcaacatcgtccgattgatttatcgtttgtgttgatgtcgattctcctctactttattgtcattctctgcaaaagattagtatgcctactactagtggaatattattattccaacatatttatgcattgcaagcatcactagttctCctctattttggtaatattaacggtcgaaactgatcgataacgaccgtcaacacctattatgggcaaagtctcttagacaacAaaactcattggcagtcaaccaggagttgaatgggattaatgaatgcatttcaagagcttgaaaagaactcaacctaaatgttgataagcattgaagatagaatcgatgaatgcatttcaggagcttggatcggacacttgcatgataatacatgaagaagtactaggtcccaaaccaacacagaaagaatagaataatctggaaaagaattgaagaaacaaactcgttagttttgaatttgagtttgatttgaaatatttggtcgaatccaaatcgtgcttacgctcgtagctaaaggcatgcgacagatggaagtctagtacatcaatccaaccacgcttagaaatgtttatggtgcatggctttggaatagtcaattaccgcaaaaaatgggacataattcccaaacacgagtatgtcatagcaatacacgaatacttggctaattgaactaaactgaactaagcatcgttgaactattcaaaacctcggcatggttttgagagatggttgctcgtgacaataatcgcgatttgaaaactatctcaaccctcaccttttatgaaaattaaagcagcatatgtcgcacatatgcaaatgagttacgtgagaagcaaatgaacccgtaactcttctatgtgcatggatttcatagaagcaacaaactaagttatgtgaaagtcttgcaaatttgtccactaactcattattgacatattctcttgaataggtgtgtccgagaaatcggaataatgagacttagagaaatacaaaattcagggggagaatttcactgaaatacttatttcagaatcttgatatagaaaattaagtacccaaaatcaatctagaaggattgaacgaagaattggatggattgtactcttttttcccttatataagttttcctgacagtttcttatcaaggtttttaatgaggcaattcgtgcgacatttcaagcgtatgctatgtactctttctccaaaattttcccactgggtttttctggagttttgatgaggcatagacttcacgcggtgagtgcccaagggagagtgttaggaatcctatgggcctggacccatgaaggcccagcccatatatattaattgggcccacacctaaacctgccatatatgtaatatggctataaatagagggagaaggctcacccttatacacgccccaagagaagagaatgaatgagaatatggccacaccatcatatcttgtgtctctattttcgtagacattttgcaacccctctgtactacggacatagcacatgattgcataatagaagggacatgatgacttgatgggaggttgggtccagagcacaaaattattaaaatgccctcttaattttgtgaaaagattgaattgcccttctgatagcaatcccgaaaacccttcctgttccattctagccggatgttccaccatttattaattactactttcgttttaaaataagttaatttagtataaaataccgttcacattcatagtattatggtatgtcatatttcgtacaaaattaacttattttagaagtcctattcagctcttcttttggtttaattcttccgaaacattgtcaccagtctgataagccaaaatccttgcaaactgatttcttaccttgcaaagcttaaccttttcagcttgctaacaaaacaccatgctcaagtgtttcaccgaaggatcaaatactttcatgggaatgcatatacatatttcttcagtgttcaatattgtaccaacatgccaggtttttacaacatggaatgcataagcatggcataaaacaggaaaaataaatgttacaaaatcaccgtaggataaaaaaaaaatagacatttgatattcgtccacgtcatctcgaataaaatttttaacccatggttaaatctgagagttattcatgaaattttttttactgccactctgggtgacatggataaatctcatacattcattttttatgctaatattagtttctaagttgtcactgcatatgtggtttgcactttatattttcccccgtctaacaagtcccgtagaaccaaattcagcagaggtcgttaagcgtgatgaccaccgagcagtgacacttgcgctatgctgttggtcttgcctttccccttgatacctagtaccacttgcttaagaccattcccacctacataaaagattagaaactgttcagctctgaatgattgaatgaagttaaaagcagcactattctcgtcctatgataacaaaagaaacagagaggaaaacacatctagatgaagggttaatgtcgggcaaagtctgtaccttgagtttaaacgatttctagtcgctggatggagcgaatcctttcccaggcagcgccagtcctgccttgtagcttcttcataagaagaggatggcatccgttaaactcgagggatttcaaggatgccatcataggcatggcatcatcggggaagtcatgaagttcagggcaatcagatatctctagtctctcgagggactgcagtttatgcaggcacatgctcaaactcctgtctgtcaccggacatcgggttaacgacaggctcctaacagaagcaaggatgttgaggtttggctcagtcgaccatgtgtagtgctcgattctgattgaaccgattgcctttatgtgatccggatgcaggaaatcttcatgcagcagatggacagcatccgcacggatatccaaggtaaaagaaatcgatgacgatgacgatgatgatggtgaaagatggaggtaacaagaagggtgtttttgtatctccatgttcctgacggtgcgtggcacccggggtagcttctccagtttggggcagttcaacatggatatcttctgaagatgagggaatttttcgtcagttgcttcagccgcccactcgaccaaatttggcatatcatccaggataagtgcctccagtgactttaaaacgccgtcgccgccgtaaagcctatggtcaatccgctggacagagcacatctctttgatacatataaccttgagatgaggtagctggctcagggtcggcaggacctgccaattcctgcagcttctgagatacaggtatgtcaaacctgacagcagattgctctccaaccaactaggcgatgttctgcccaggtactgtctgatgtgcaactcttcgatcttgcagggtggctggagtccctcgagaacttgctcatgtgacgattctgagggttcctgtagttgtaatgaaggctcccactccaacttgaggaccttgagaaactctttcctctcaaggtgagccctgtgtgcttcctctctgttggagacagcttggagcccctttatgctgagttcaccgcagagagagttgatgtgtgcgagcgcttccaggccatgccccggcttcctgcagccactgtcagcgcagagctcaactgatccctgtagtttgtcctcggctgaaaccagtgcttggagatgcagtagcttgttgactcctttaggaagtttcttgagcgatttgggaaggcctaggtacctcagatgcttcagcttaccgatgcctttggggaaatctgcggtgatgtttgtggaggtgaggtccagcaccctgacggcctccagctgtctgagtatgtcgccgtccatggcgctcattcgtccatcgaaaaccaacaatgtccgcaacttgttcagcacggggtgtttcttgagccagtccaggtcaaggcaaccaccttgtccctgatcctgatctgtcactgtcacaggagctacagacaggtggcgaacggtaggagggattcttcttcccaagctgctgctagtaaccctgaagaaatagctagcggagacggagagcagcatcgaatggacgtgctcacgaatggcgagatacat
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| CDS seq | atgtatctcgccattcgtgagcacgtccattcgatgctgctctccgtctccgctagctatttcttcagggttactagcagcagcttgggaagaagaatccctcctaccgttcgccacctgtctgtagctcctgtgacagtgacagatcaggatcagggacaaggtggttgccttgacctggactggctcaagaaacaccccgtgctgaacaagttgcggacattgttggttttcgatggacgaatgagcgccatggacggcgacatactcagacagctggaggccgtcagggtgctggacctcacctccacaaacatcaccgcagatttccccaaaggcatcggtaagctgaagcatctgaggtacctaggccttcccaaatcgctcaagaaacttcctaaaggagtcaacaagctactgcatctccaagcactggtttcagccgaggacaaactacagggatcagttgagctctgcgctgacagtggctgcaggaagccggggcatggcctggaagcgctcgcacacatcaactctctctgcggtgaactcagcataaaggggctccaagctgtctccaacagagaggaagcacacagggctcaccttgagaggaaagagtttctcaaggtcctcaagttggagtgggagccttcattacaactacaggaaccctcagaatcgtcacatgagcaagttctcgagggactccagccaccctgcaagatcgaagagttgcacatcagacagtacctgggcagaacatcgcctagttggttggagagcaatctgctgtcaggtttgacatacctgtatctcagaagctgcaggaattggcaggtcctgccgaccctgagccagctacctcatctcaaggttatatgtatcaaagagatgtgctctgtccagcggattgaccataggctttacggcggcgacggcgttttaaagtcactggaggcacttatcctggatgatatgccaaatttggtcgagtgggcggctgaagcaactgacgaaaaattccctcatcttcagaagatatccatgttgaactgccccaaactggagaagctaccccgggtgccacgcaccgtcaggaacatggagatacaaaaacacccttcttgttacctccatctttcaccatcatcatcgtcatcgtcatcgatttcttttaccttggatatccgtgcggatgctgtccatctgctgcatgaagatttcctgcatccggatcacataaaggcaatcggttcaatcagaatcgagcactacacatggtcgactgagccaaacctcaacatccttgcttctgttaggagcctgtcgttaacccgatgtccggtgacagacaggagtttgagcatgtgcctgcataaactgcagtccctcgagagactagagatatctgattgccctgaacttcatgacttccccgatgatgccatgcctatgatggcatccttgaaatccctcgaatttggggaaagttgttgcgcacagcacacattctctttctga
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| Protein seq | MYLAIREHVHSMLLSVSASYFFRVTSSSLGRRIPPTVRHLSVAPVTVTDQDQGQGGCLDLDWLKKHPVLNKLRTLLVFDGRMSAMDGDILRQLEAVRVLDLTSTNITADFPKGIGKLKHLRYLGLPKSLKKLPKGVNKLLHLQALVSAEDKLQGSVELCADSGCRKPGHGLEALAHINSLCGELSIKGLQAVSNREEAHRAHLERKEFLKVLKLEWEPSLQLQEPSESSHEQVLEGLQPPCKIEELHIRQYLGRTSPSWLESNLLSGLTYLYLRSCRNWQVLPTLSQLPHLKVICIKEMCSVQRIDHRLYGGDGVLKSLEALILDDMPNLVEWAAEATDEKFPHLQKISMLNCPKLEKLPRVPRTVRNMEIQKHPSCYLHLSPSSSSSSSISFTLDIRADAVHLLHEDFLHPDHIKAIGSIRIEHYTWSTEPNLNILASVRSLSLTRCPVTDRSLSMCLHKLQSLERLEISDCPELHDFPDDAMPMMASLKSLEFGESCCAQHTFSF |
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| Function | Putative disease resistance RPP13-like protein 1 [UniProtKB/Swiss-Prot:Q9LRR4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0000560 | OsLima_04g0000560.01 | Chr04 | 777233 | 788502 | - | NAM | ||
| CDS seq | atgtatctcgccattcgtgagcacgtccattcgatgctgctctccgtctccgctagctatttcttcagggttactagcagcagcttgggaagaagaatccctcctaccgttcgccacctgtctgtagctcctgtgacagtgacagatcaggatcagggacaaggtggttgccttgacctggactggctcaagaaacaccccgtgctgaacaagttgcggacattgttggttttcgatggacgaatgagcgccatggacggcgacatactcagacagctggaggccgtcagggtgctggacctcacctccacaaacatcaccgcagatttccccaaaggcatcggtaagctgaagcatctgaggtacctaggccttcccaaatcgctcaagaaacttcctaaaggagtcaacaagctactgcatctccaagcactggtttcagccgaggacaaactacagggatcagttgagctctgcgctgacagtggctgcaggaagccggggcatggcctggaagcgctcgcacacatcaactctctctgcggtgaactcagcataaaggggctccaagctgtctccaacagagaggaagcacacagggctcaccttgagaggaaagagtttctcaaggtcctcaagttggagtgggagccttcattacaactacaggaaccctcagaatcgtcacatgagcaagttctcgagggactccagccaccctgcaagatcgaagagttgcacatcagacagtacctgggcagaacatcgcctagttggttggagagcaatctgctgtcaggtttgacatacctgtatctcagaagctgcaggaattggcaggtcctgccgaccctgagccagctacctcatctcaaggttatatgtatcaaagagatgtgctctgtccagcggattgaccataggctttacggcggcgacggcgttttaaagtcactggaggcacttatcctggatgatatgccaaatttggtcgagtgggcggctgaagcaactgacgaaaaattccctcatcttcagaagatatccatgttgaactgccccaaactggagaagctaccccgggtgccacgcaccgtcaggaacatggagatacaaaaacacccttcttgttacctccatctttcaccatcatcatcgtcatcgtcatcgatttcttttaccttggatatccgtgcggatgctgtccatctgctgcatgaagatttcctgcatccggatcacataaaggcaatcggttcaatcagaatcgagcactacacatggtcgactgagccaaacctcaacatccttgcttctgttaggagcctgtcgttaacccgatgtccggtgacagacaggagtttgagcatgtgcctgcataaactgcagtccctcgagagactagagatatctgattgccctgaacttcatgacttccccgatgatgccatgcctatgatggcatccttgaaatccctcgaatttggggaaagttgttgcgcacagcacacattctctttctga
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| Protein seq | MYLAIREHVHSMLLSVSASYFFRVTSSSLGRRIPPTVRHLSVAPVTVTDQDQGQGGCLDLDWLKKHPVLNKLRTLLVFDGRMSAMDGDILRQLEAVRVLDLTSTNITADFPKGIGKLKHLRYLGLPKSLKKLPKGVNKLLHLQALVSAEDKLQGSVELCADSGCRKPGHGLEALAHINSLCGELSIKGLQAVSNREEAHRAHLERKEFLKVLKLEWEPSLQLQEPSESSHEQVLEGLQPPCKIEELHIRQYLGRTSPSWLESNLLSGLTYLYLRSCRNWQVLPTLSQLPHLKVICIKEMCSVQRIDHRLYGGDGVLKSLEALILDDMPNLVEWAAEATDEKFPHLQKISMLNCPKLEKLPRVPRTVRNMEIQKHPSCYLHLSPSSSSSSSISFTLDIRADAVHLLHEDFLHPDHIKAIGSIRIEHYTWSTEPNLNILASVRSLSLTRCPVTDRSLSMCLHKLQSLERLEISDCPELHDFPDDAMPMMASLKSLEFGESCCAQHTFSF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0000560 | OsLima_04g0000560.02 | Chr04 | 775761 | 781218 | - | NAM | ||
| CDS seq | atgaagaggttaggcttctcttccatctccccaactcctgacacaaacaacttctccagttgctggtctagggctttgaagggcacaagaaaaagcaatgggagcgattgcatgtttaatggtgcaaatcctagtgtgctggctgtaattcaaggcgccttatggtgcttggctggtgcttctgagctccgtgggggtgctcgaatctcgataggtcgttag
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| Protein seq | MKRLGFSSISPTPDTNNFSSCWSRALKGTRKSNGSDCMFNGANPSVLAVIQGALWCLAGASELRGGARISIGR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.146978 | 0.056611 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0111900 | RBH | 1.532223 | 1.220000 | 2.098635 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g02110 | RBH | 1.036551 | 0.815102 | 0.537016 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0111900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0000580 | SBH | 0.138142 | 1.473816 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0000610 | RBH | 0.598731 | 2.234470 | 2.531422 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0000580 | SBH | 0.354799 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0000650 | SBH | 0.029909 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0000570 | RBH | 0.000000 | 0.000000 | 5.813252 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0010000 | SBH | 29.190267 | 67.9693185 | 86.659172 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0000590 | RBH | 0.081581 | 0.000000 | 0.008141 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0012800 | RBH | 0.9724385 | 2.0020195 | 0.098749 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0000680 | SBH | 0.107170 | 0.021732 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0000590 | SBH | 0.077310 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0000590 | RBH | 8.402252 | 9.379689 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0000560 | RBH | 0.076819 | 0.268384 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0000570 | RBH | 0.545067 | 5.267883 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G000590 | SBH | 0.860602 | 2.352899 | 2.680830 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0000560 | RBH | 0.271259 | 1.636026 | 0.0 |
