Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0000520 | OGI:04001650 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:699664-706751 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcacatgatggacggtaaaattcctctaaaaataaacaatggtaaataacatttacatagaaagttttttttaaccccactggggaaaaaatatcaggggcaagaacatggacatacacaacaagcgtctacaagaattagcttataatagaagtccttacttcacgatcaaccataaacagttaaattcatgaaacacatcactcaaggaataaacatacgtgtccccataacacatacttcttccatttcataatgtaatactttctagcattgtccacattcatatatatgctaatgaatttagacacatatatatgtccagatttattaatatctatatgaatatgggtaatgttagaaagtcttacattgcgaaccggagagagtaacatctgtgggagaaaaatcagtgtcagagctcttcttgtcactggtgttcattacaccaaagcatgacagcctggggttaccatcctacagttcaccatcccaggaaaaaaaagaacattatatgccttgtttctggaagcccaagctaagaagcaactaagtagcacaagtactgactcaccgaatcaaacataacttttcttgaattgaaattatggtacatatgtcttcccttagtacagcaatacttcaatgcttgtgccacatagtatgcaacccgtaccctcattacccagctcaacggagggttcttccctaccaaggataggcaccatgagtgcaaaatgtagataatacaaatgcaaataagtcttctccaatggaaaaccttgaaacgcaaaaaggaggcaaactctccatttcacagatgccatgagaaactcagatgtcttctaaaaaggcaacaaataatgaaaacatcttgatgccaactagtattaccataaacagaacactaataatgagcatttatatatagatgagtaaatgcattaatgtccagtcaaccaagtaaaacaaatgtacaaaagaaacaaaaacggaatattgttgtaggaactacttcaaccatctacaactgaaagcaacaataattcaacattagatttaggtgacaacaaaaattattcaataaggtgcccattcttaacatcttgatgccacatttgtactaccaaatcgaaaataatattgccaaaccccaatatgctagctccaggtaatatacaagaacaagagaaaaagcggcaccaaacacatacagcgaaggagaagaattgtcaaggtctcatgtggcataaactctgtgaccatcagttgctggccactctcccagcagcagccgatcagattggacagccggtcactccacaacctcccaatagcccttgcgtcatcctacacagacacaagaagagccattcaatcgatccaccaaaggctatggcctatgggggcactattgcagatgagacaaccccatggtgtaagctgaacgaactaagaattggcggaagtcgagccagacagaacagataaggtgcttgatagctacggtttggcccatgctatgaagagtccgcagtagacaatgtcacctttctgcgacacaatgtggtcgggaaagaacccatttgtcgcccttgagagctcagcgaaggtgtactcggtgaagttgaacatcaagatgccatcagctgcacgtctcaatagaccaataccattagaatcagcactaagaataggacagtcaaaatcagaaatagaatctcgcaaaactcacgaggtgcccagaagctcgcatacaggatgaccttgtggattgtgttagtgtttataatgtctcccttgtctgtagcgaaagaatatcaagtgtgtaaacagactcaccactgttgaaaaaaaaatatacttgtgtcttccaaacagcgtcttccaaacagccaagcattgcaggttcctctctcgaaagtagagtgtgaggggaaagaatcatagtaatacacagcttccactcctcgaccaaattctcgctagcggaccgggactaaaggaaaatccttttgcgaataaaatttgtaaatcttaaacatccatccacggtcattatcaagcctttcacagctcgatattcataatcctctgaatctttctcatcatcatctaagtttcatcatgatcatcatctggaacatcgtcttctcctttttgtaaaaattcctccaaatttggagtgtcattaattaagagattcttaatctcagcatcaatcttgatataagactttgcatcttggaggatgaaatagaaagaatcactaacaatttgaccagatcttaaatccatatgtaagggtgtatgatagatattacccaatttgagtgttagtagctgaactaccaaaacccagtctagcctgaagcgaataggaagaatccggatcagtggcgtacctaggatttttcaactggggtttgataaactaattaatttataaaataatataatattatcttattattgtataatattatatatttttaatattttattttatattgttttttctaaatatttacaaaaattaacattagtttttcttctatttgcatcctattttatatattataagttattttggttttttctgatttaaatttatttaacgttaagcaaatttagagaaaaatgctataaataagaaataaatgttatacccatataattaattttatgttataaaacacaacataagacatataatcgtatatagtaaaagtcacaactcacttgagtaatctatgctttctataaagttaaagcccactaagtctaaatctcaacatacaaccatgccacatcatcacccactagcaataattacatatttaatctcatgcaagcatacaacatgatctactatttatttaattgtacaaatcaacatgcaagcatattcaaccatatcatttgcacaatattttaactaatctatcacatttacaatatttaacatatacttattaatatgtttcacactaaagcataggtatcatttgactgataaatcctgatgtttcattattttttctttgtcctcctaggttgattgtcaaaaaatatatattgagaattgcttagtaattcccgcagcaaagcgcggggagtcaactagtatttatagtgcactatgatcattagattcataacaaatgtcactccctaatttattctagtttatccatataaattatagatatttatatgactagagatacttgagggcctctgcccaccatcacagctcacagaactatagatatatggctatggtggtgtgaagtacccaagttggttaaaacaaaatcgttttaggagactgaaatggctaaggccctgtttgattcagcttaggattattataatctggattattaggagtaagctgaaacaaacaagtagattattatgctagattattataatctataagccagattactataatccaataatctcgtctagaggagctttttccagattattgagtggctaaagacccactacccttagatacctctaataatccagataaacaaacaacacgtagcttattttatgtcagcTTAttataatccagcttggagtaatctaatttaataatctagattacaataatcttaagctgaaacaaacagggccttagactcactaaaggaatgttccaatctctaagctcttctagatataagtaagctttttattcatcttcgtgagcttacactcaattgtcttaccaagctagaaaggttgccgaggcttccaagagtctatatacactaatggagaaaccatctttcgtgtgttgggcaaaaaccacaatagtcccggttcaaccaaaaaccgggactaaaaatcattttttgtcccggttaaaaagcccaacgcgccgggactaaaaatgatccctatcacttatcctctcctcctcatctttttacttctcctcctccctttcctcctctctctctctctttcctctctcttatcctctccttttctttttcttgcaacagagaggagcaagcagcaccggcctgcgGGCggcggtggcgggcagcggcccgaggcaatggcgatggcggccagtgcggcggtggaggaacaagcagttatcgttgattttgtggattatctgtgaattttttttgatttgtgatgtgtttggatctgtaaatttgtgatgtgaattatgaatgtggatgattttgtgatttttctgtgaatgtggatgattttattattgagtttggttagaaatcaatatgcaaataacaacaataaagcaatgaaaaaaatAaaaaaaaaactttagttacggttggtgccatctttagtcccgggtatttgaaccgagactaaagatagcgatctttagtcctagattcgtaaccccgatttgctacccgaggctatagggggttacaaaccagaggtacaaatgctttctccaccagtgatatgttgtcgtgtcaagctctgattcttacttgtgcagaagatgtgtagatgataagatcactcgttgtcaagcgaacatctcagattgagcattgaatgttaggtacatctggagcgaatagaaaggcttgcagacaagcaggctgacaagtttgacaccatcccgttggatatatttggcagatgtgatgagttgccaacaaggcttgtccgaggccagataagagaggaagattactcactatttctgtttcctactccctccatcctaaaaagagacaaaccctggtttccgtgcccaacgtttgaccgtccgtcttatttgaaaaaattatgaaaaaaaattaaaagacaagttacgcataaaatattaatcatgttttatcatctaacaacaatgaaaatacgaattataaaaaaatttcatataaaacgggcagttaaagttggacacgaaaacccagggtttgccttttttaagtacagagggagtacatcggtagaatgacttattatcgcagattgtgccataacagacactgtcctgcagaactacttgagaaactctgcatccctaacttggttgttcttatcgggtcttccctccatcacatcaatcccttctgaggtgatgaagtctctaactatgcttcaggaattgttcatcatcggttgtgcccagattacctgtttgcaaggcctaaatcatctcagtagctttcgatccctcgacatttcgcagtgtccgaaccttatgatgaaccttatgacggaccttctctaggtactgggataattctctgagaaccaagtgacattgctacatctttgaatcgagttgtgaccaggaccttactccctttcttccctaccttcaatggagaaagtagttgattcagtttgtcctgtgcacttgcatccttctcatgccatatgtcatctaatacaagcaagaatcTtttgccagttagttctgcctctaacttcatctgtaatgtgtcaaggttactaaactcactggttggcttccctgtagctgcctcgagcatcttttggtaaattttgtccacactgaaacctggtgaaacataaatccacatgacagggaaaaagtagctgtccatcttttcataactgcaaacatgttgggctaacgttgtcttcccagaaccagcaatgccatagatgctaatcactgaataacacttgctgttccagcagctttgttcacaatcacctgttgcttcattgcgggctggatccagccttgggccaagtccagtgatggcccagcctattttggcccatattagacttagcattgtgaaaactagtctaagCccatagtcctttaggcccatggcccagatgatccaggatttgggttcgcccatggtatcacggagcatccttactatctcatcacgttccttgtctctgccaataatgatttgtgtaggagatgaagtggtactcctaattgatgtattagcaggatttgatatgccattgccatttgtaccactgccaatggttctttctagcagtaacaaaaattgagacccttcttcagttattttttctaaactcgttaggatttttttcaacttgctggtttttcctgagatgatattctttgcatgatctagtgtcgtcattacacctgatggagaaatgccctgcatcatggtggcacaactgagatttcatttaagggagctagcatctggatgttgcagcatggaaaaactaaagtgcacagaaactatacaatagaatagataaattcctcaaataaaagatttatttaaccaagtgtttacaattttggcactacatttcttttaatccgagtcttcaacatcagaggtgaacatattttaaatcgctcaataataatattatccgtcagtttcaaactttgaggaactactagtccatctaacctgcccacccctctagagtggacataaacgcaatttactcaaaaaaaaaaagtttcaaaatttaaggaactactggtccatgtaacctgctcacccttctagagtgagttattttctttagacttcagattgtagtaccacatgtaaaactgaccacaaatttcgttaactatcacaagcatttgcccggtcaaaccacacttttcatgttctcattggaggcagagactgattaaaagggtatatcaaatgagaagatgaaaagtctagattgattctaccaaataatagtggttagtggagatcactaaaaaacaaaaaaagctacgcctaattggaaattaaagtgggaaattaattaaccttgttctcgaggcggttgtaatcagcgacatccaacatatcctcgaggtcgtagaaggcggagcggagcctgcatgcccactgctccatgtcggccctaatctgctcctgctcaggagggatcctctgcgcgtactccatcagcagcgccagccgcgggagaatccgggactcgaggtccctgagcttgtcggatttgtggaaggcgaggagggagaagccatggttgaagagccttgtggtgatgggtgatgccagccaccccaagatggagatcgcccacccaaccgcagcaacctccgccat
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| CDS seq | atggcggaggttgctgcggttgggtgggcgatctccatcttggggtggctggcatcacccatcaccacaaggctcttcaaccatggcttctccctcctcgccttccacaaatccgacaagctcagggacctcgagtcccggattctcccgcggctggcgctgctgatggagtacgcgcagaggatccctcctgagcaggagcagattagggccgacatggagcagtgggcatgcaggctccgctccgccttctacgacctcgaggatatgttggatgtcgctgattacaaccgcctcgagaacaaggggtgggcagaaagaaccattggcagtggtacaaatggcaatggcatatcaaatcctgctaatacatcaattaggagtaccacttcatctcctacacaaatcattattggcagagacaaggaacgtgatgagatagtaaggatgctccgtgataccatgggcgaacccaaatcctggatcatctgggccatgggcctaaaggactatggGcttagactagttttcacaatgctaagtctaatatgggccaaaataggctgggccatcactggacttggcccaaggctggatccagcccgcaatgaagcaacaggtgattgtgaacaaagctgctggaacagcaagtgttattcagtgattagcatctatggcattgctggttctgggaagacaacgttagcccaacatgtttgcagttatgaaaagatggacagctactttttccctgtcatgtggatttatgtttcaccaggtttcagtgtggacaaaatttaccaaaagatgctcgaggcagctacagggaagccaaccagtgagtttagtaaccttgacacattacagatgaagttagaggcagaactaactggcaaaAgattcttgcttgtattagatgacatatggcatgagaaggatgcaagtgcacaggacaaactgaatcaactactttctccattgaaggtagggaagaaagggagtaaggtcctggtcacaactcgattcaaagatgtagcaatgtcacttggttctcagagaattatcccagtacctagagaagacaagggagacattataaacactaacacaatccacaaggtcatcctgtatgcgagcttctgggcacctcctgatggcatcttgatgttcaacttcaccgagtacaccttcgctgagctctcaagggcgacaaatgggttctttcccgaccacattgtgtcgcagaaaggtgacattgtctactgcggactcttcatagcatgggccaaaccaggaattttaccgtccatcatgtga
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| Protein seq | MAEVAAVGWAISILGWLASPITTRLFNHGFSLLAFHKSDKLRDLESRILPRLALLMEYAQRIPPEQEQIRADMEQWACRLRSAFYDLEDMLDVADYNRLENKGWAERTIGSGTNGNGISNPANTSIRSTTSSPTQIIIGRDKERDEIVRMLRDTMGEPKSWIIWAMGLKDYGLRLVFTMLSLIWAKIGWAITGLGPRLDPARNEATGDCEQSCWNSKCYSVISIYGIAGSGKTTLAQHVCSYEKMDSYFFPVMWIYVSPGFSVDKIYQKMLEAATGKPTSEFSNLDTLQMKLEAELTGKRFLLVLDDIWHEKDASAQDKLNQLLSPLKVGKKGSKVLVTTRFKDVAMSLGSQRIIPVPREDKGDIINTNTIHKVILYASFWAPPDGILMFNFTEYTFAELSRATNGFFPDHIVSQKGDIVYCGLFIAWAKPGILPSIM |
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| Function | Disease resistance protein RGA2 [UniProtKB/Swiss-Prot:Q7XBQ9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0000520 | OsLima_04g0000520.01 | Chr04 | 699664 | 706751 | - | NAM | ||
| CDS seq | atggcggaggttgctgcggttgggtgggcgatctccatcttggggtggctggcatcacccatcaccacaaggctcttcaaccatggcttctccctcctcgccttccacaaatccgacaagctcagggacctcgagtcccggattctcccgcggctggcgctgctgatggagtacgcgcagaggatccctcctgagcaggagcagattagggccgacatggagcagtgggcatgcaggctccgctccgccttctacgacctcgaggatatgttggatgtcgctgattacaaccgcctcgagaacaaggggtgggcagaaagaaccattggcagtggtacaaatggcaatggcatatcaaatcctgctaatacatcaattaggagtaccacttcatctcctacacaaatcattattggcagagacaaggaacgtgatgagatagtaaggatgctccgtgataccatgggcgaacccaaatcctggatcatctgggccatgggcctaaaggactatggGcttagactagttttcacaatgctaagtctaatatgggccaaaataggctgggccatcactggacttggcccaaggctggatccagcccgcaatgaagcaacaggtgattgtgaacaaagctgctggaacagcaagtgttattcagtgattagcatctatggcattgctggttctgggaagacaacgttagcccaacatgtttgcagttatgaaaagatggacagctactttttccctgtcatgtggatttatgtttcaccaggtttcagtgtggacaaaatttaccaaaagatgctcgaggcagctacagggaagccaaccagtgagtttagtaaccttgacacattacagatgaagttagaggcagaactaactggcaaaAgattcttgcttgtattagatgacatatggcatgagaaggatgcaagtgcacaggacaaactgaatcaactactttctccattgaaggtagggaagaaagggagtaaggtcctggtcacaactcgattcaaagatgtagcaatgtcacttggttctcagagaattatcccagtacctagagaagacaagggagacattataaacactaacacaatccacaaggtcatcctgtatgcgagcttctgggcacctcctgatggcatcttgatgttcaacttcaccgagtacaccttcgctgagctctcaagggcgacaaatgggttctttcccgaccacattgtgtcgcagaaaggtgacattgtctactgcggactcttcatagcatgggccaaaccaggaattttaccgtccatcatgtga
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| Protein seq | MAEVAAVGWAISILGWLASPITTRLFNHGFSLLAFHKSDKLRDLESRILPRLALLMEYAQRIPPEQEQIRADMEQWACRLRSAFYDLEDMLDVADYNRLENKGWAERTIGSGTNGNGISNPANTSIRSTTSSPTQIIIGRDKERDEIVRMLRDTMGEPKSWIIWAMGLKDYGLRLVFTMLSLIWAKIGWAITGLGPRLDPARNEATGDCEQSCWNSKCYSVISIYGIAGSGKTTLAQHVCSYEKMDSYFFPVMWIYVSPGFSVDKIYQKMLEAATGKPTSEFSNLDTLQMKLEAELTGKRFLLVLDDIWHEKDASAQDKLNQLLSPLKVGKKGSKVLVTTRFKDVAMSLGSQRIIPVPREDKGDIINTNTIHKVILYASFWAPPDGILMFNFTEYTFAELSRATNGFFPDHIVSQKGDIVYCGLFIAWAKPGILPSIM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0111100 | RBH | 0.220501 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g02040 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0111100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0000530 | RBH | 0.119934 | 16.879185 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0000570 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0000530 | RBH | 0.267224 | 13.659175 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0000590 | RBH | 0.0 | 0.036378 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0000530 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0009100 | RBH | 0.8192915 | 6.777314 | 0.006804 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0000550 | RBH | 0.069508 | 0.167882 | 0.088245 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0011700 | RBH | 0 | 0.0469925 | 7.425858 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0000510 | RBH | 0.065950 | 0.165859 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0000540 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0000550 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0000520 | RBH | 0.000000 | 0.252064 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0000540 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G000550 | RBH | 0.265588 | 0.000000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0000510 | RBH | 0.507399 | 6.560834 | 0.641795 |
