Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0042420 | OGI:03100690 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:39113414-39127633 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gaatcggtgccaccgcgtgtcggccatcggcgaggctctagcgctcagagtcgctGggccgctcctctctctatccgcccctgtctcgactctcgagctatgatggtggactgctatggcgtacagcggtgacgggattggctgctgctcaCTGctccactacgcggagagccccatgaccatggccaggcgatggtttgtccatttccctccctttcttctacagagagcgctagttctattctttcttgctcttcctcagctcatctttttttctccgcacggtatcgtcgttgatcgtatcctcccttgtgctatgttgttttcctcctacgccttgctctagattgcgccgttgtggttcgagggttctttcgatcatgcgtgtgcccactgatttttgggttttctgctttctaggctgcactgctggattggggattctctgttggcgttttcacttgggggagggagttgcctccctcgtctactgctcgcaaaggtattttgtgctctctcgtgcactggttaccaccttttattcggtgtgtatgcgatgaggtgattttatcggcgagatatctgctttgttgatttctgatccttattttgcccccttcaattaacaggaaacagttccttcacatatttatgttaattcgctgattccttcatatatttgtgttaattcgttttttttcatcctgctaagttacattctttcataggttgcctctgtttcctttcgtttctgatctctatagatcagtttgttcagtcgctgggatgCctgttcggttgattccatatatgtGgggtttcTttttttcccctttagattcgacaatagagagatcatgcgaagtgcttctttgcatcccacctctgtatgacaaattctgaattcattagcacatatacatagcaccgagaataaatttgaaaggtggctaggagaaaagaaaattaatccccaaggaaaatggtgtggtaaagcatgccaagaagttagctttgtgcactaggaatcacaagagatgttcttgcactcgtgaagaaggagtgtgatagcccccctcctttgttttccttttttagagcatggttcagtattcctgtagagtaaaggtcctacaaagtaggaagaagccttggcccttgggagggtcaaataacatttacttatgccatccaaagtttagagaaaaaaatgtgaaacgcttagttgtaaagatttgggcctgtcctgttactgaaagctgaatggccaaaaaccgaccagttatattgcagcttgagccaaagctttcttgggaatgtagtttgtttgtattgtaaccacttcttaggtacataaatcggataaaaatttttatgcctgcttaatacacatccattggtgataagttgctcttctgtatttaggatgttttttgctcacttatgttgccccgtggttctttggttttgcggccatggtcttcttcctctgtcagaccttatgccatggtgtgtttcgggcaaactctcgatgtcattatgtctttcgtcttttgtgtttgtttttaacacatctttaggtgtatctatgtttgaacctgcctcctggatttgttcttcatggtttcccaccctgtgtccatgggatatatcgtgctctatgccagtatttagacattacttatctgtatctgtgttttgttccatgtttctgtggtggttcatgcctctctcgtttatgatttgtttttacattgcatgcccattcatatgtatctgcaatgtgtctgtgttttgttggcttcttttcttgctgtacagctgccgcatggagtggtcgagatCcctatgcatctgcccgcggaagcgtgcatatggtacttgctgatcttattatagttgcatgtggtgttctcatagccagcgaggctattagcgcacattttccctgttgttcactaattcatagttttgaacgtcaatagatgagtcgtcctcatgttatgctgccaatgagcgatcagtgctcgcggcaagctcatcatgtcccataggtacatatgctcggtatcctcagagttagcgagctcatcaccatgtttattgattgttcttttttgctgattcacaattttgttcggcgatagatgaaccatcctcatcctgtgcttgtgatgaacgcccaatgttcacaggtggttcatcgttctcaataggtatgtacgctcgaagtgatcatcgctatctcattgtatagttccattcctcacccattgcatatttgttctctcatatttcactacaattgttctctcgttgcgacgttgtatgctcggagcatatattcatatgcttatgttcatgtgtttgctcattcgttcgtgccagcacaaatttattttgtttccattttctcattctgcctcctcatctgagtgttccacagggagtcatgggccttccctcattcatcctacccactctgccagttagttccatgttgctatttgttttgttgttcggctacctataacctttttctttcttgctattgattgccatgcctatttatgttgtccataggagaccatttctgtccaatagtaccatcacgtattgctcgggttaaccgggaaaaacggcgggcagctaggaaagcatgtgtcattgtacgcaaaggttgttcacatgcttatctaaacccttctttgcggtcaactaggtggatcCTcttattgctttcctttctctttgtttcttatttgctatttccgttgccccgttcttgttctgtttgcacagaggctatcatgtattcaccgtcagtgaggttctcatattctataccaaaggactacatggagattcttaaaggtgataacttagtgccaaccttccttcgctctacttttctcactgtttttggactctatatctaccgttggacaaatatatccatgctcccttgcttatgagttgccccattcttgcagctacgtacccagaacgttcttactatggtggtcctgattatcaatgcaatcattgtggtgcgcttttttggtaccaagaaagagtcgttagccagagttcgcatagggctaagaggattgcatacaatttgtgttgccgtggtgggaagatctccttacctgtgcataggcctttccctcctatcctacaatcattgcttcgttttgatggcggcgcccgttccagctctttcatgcgactcatcaggcagtataattcattatttgcattcacataacttggagctaacattgacatgagcataaacactggtcatggcccttatgtcttccgtatcaatggtgtcgtgcatcatagaataggttctttgcttcctgctcctggacggcgcccggagtacgcacagctatacatatatgacaccaccaatgagctgcaaaacagacttaatatttttgaccatgctgacagtgctgcagatgtccctgaccctgctattgtacaagagcttatctctatgcttgaccaatgcaatcctcttgtgcaacagttccggattgctcgagacaagctgctctctccaagtgctcctgaaattgctatcaaactcattgggtcaggtcattctcagggtgatcgttactgccttcccactgcttctaagttggctgcgctcattgttcctggtacatcttctgagatatcgaagtttgatgtcgttgtgcagaagcattcaggtgaattgagtcagctttctcccattcatccagctcttatgtcactgcagtacccacttctcttcccatatggtgatgctggttttcgtgctggcattaagcttagagaggtagatgatcagccgcctgcgagtcgtgatgaggcgtccatgcttgaatattatcggtatgagtgccactaccgaaaggatgagcccaacctatttacttgttgtggtagactttctgatcagctcgctgttaatgctttctcatgtatcgagacatctcgcctcaacttccatactctgagccagaagaaccttcgctctgaaacacattaaggtatatctgatgctgttggtaggggagacactaatggaaaagatgttggtataaaggtaattctgccatcaagtttcattggaggaaggcgatacatggtgcaaaattaccatgattcaatggcgttgtgcggtgcctacggtcctcctcacatattttcaactttcacatgtaatcctaaatggccagaaattgctcaggcgattcgttttgagctaggccagaaaccaaatgatagaagtgatatggtcacacgtgtttaccatatgaagctagatgagtacattacatatattaagaatggacaggcattcggtccaatacaagctggtaagttccatatctcattgattatagctatccagtctttatacacatctctttaccaccacatgtattgcttctgctagctgttcatatcttttttcttgctgttttattttccagttgtatacactgtcgagttccaaaaaaggggattgctgcattctcatacattaacatggctcatgggtcaatctggagatccttcacctgcattcattgatagccttataagtgctgagataccagatataggcactgataaatttgggtttggtcttgttgatgaattcatgatacatggcccatgtggtgagcacaatccacattctccttgcatgaaagatggtaggtgctcaaaggggtatccaaaacaattctgtgatgtgacttccatagatgatgatggctatcctatctatcgatgacgcaacaatggtcgctatgtggtaaagaatggagttaagctggataatcggtgggttgtcccttataatctagctcttctcaagaaatttcaaggtcatatcaatgtggaatggtgcaataaaacgtaccttatcaagtacctttttaagtatgtaaataaaggaagtgattgtactgcgtttgctttcaagcagaaggattcagaggaggcagacactagcagcgccaacaatggtgggatagatgaggttatgcagtacatcaagtctagatatctatcaacttgtgaatcatactggagattatatgggtttgagatacatggaagaactccttctgttgagcggcttgttgtgcacatgcccaatatgcagtttgtgatataccatgaagaggttgaccttgaagaggttatagaagaccctgattcttccagaactatgcttactgaatggtttgttgctaatcaacgacacatctttgccagggatctcacatactgtgagtttccctccaagtttaactgggactccgacaaaaaagtctggacaaaacgtaaaagaggaaccaaaatagggaggttaaggcatattcatccaagtgctggggagccattctaccttagaatgttgctgatggtagctcgaggttgcatgacttttgaagatgtcaggacataccaaggtgtgacatatagcacctatcgtgaagcttgccaggcacgtggtcttattggtgatgatgctgaatgggttcatctctttgaagaggcagttatctgggctactgcataccaactcaggaacctattcatgactgttctagcacattgtgatgtaggtgatgttagggttttgtttgataaatactggaagtatatggcagatgattttgcttacaagctaaccaaagctcttggagtacagcgtagagctattCcggatgttatgttacagaacaccttgctcaaagaattggatggcattttctcaaataatggcttattaatctcatcattcgatctcccgacaccagctgaatgttcggataccagtgcaggaaataggcttattttagaagagctcagtttcaaccaaggcagcctccatgaagagtctatgtccatgtatgccagcttgaatgatgaccagaagaagatatatgacaaggtctttgacaggctagctcataaggaaaaatgtattttctttatatctagacatggtggaacagaaaagacattcttgtggaatgctattatggcaaggctgaggtcaagaggcgagatcgttcttgcagttgcttcttctggagtcgcagctctgctcatgcctggtggaaggacagctcattcacgctttcgaatacctatagatatacatgatcagtccatgtgtggtgttcgtagaggtacaatacttggagatcttattaagaaggcatcattgattatatgggatgaggtgcctatgacaaacaagctatgcttcgaggtgctggatagaactcttcgggatattcagtccactgatgatgcaagtaatgcgcataagccatttggaggtaaagcaattttgcttggtggtgattttaggcaggtcttgccagtgattcagcaaggtataagagctgatgtggtgcctgcttccttggttaaatctgcattgtggaaccatgttgaagtcttacacctcaccattaacatgaggctacataatccatcgctctcgcagcaagccaaggatgagctagcagagttcgctaaatgggttcttgacattggtgagggacgtgttccaatggatagacgacagggtgaggttgaaaagacattgtcacgcccagaaattcccgaatagaattccaagcagaatgtgcattaaaatccccgtccaggaccggccggggtacacaaacgacaatgttgacattcagatccacgtcttacaaacatcataaaagtcttacataaatgcagcggaaaaacgaaagacaacaggagctaagccttgactagaactgcagcgggaacaccactccacaggcatcctcaacggcacggacgaagcctactcctcggagaaacctccatctgacacatactcatactctggggttgggaaaaatagagcaagactgagtactacccactgtactcagcaagtcataccggaataggggtatgatgcagggaattatcaaaggagagctagagtggttcatttgcataaagcgagtatttataaacagaagtttaaagaagaaaacagtcgtaataattaatcaatattaatcatccactgtccaacgctataccacgttgcgacaggcccaaccatccacctatactatctaatttcaaaagactaaactagggtgagtctaatcacggtgaatctggttgaccgcccataaccgcgggcacggctattcgaatagttttactctgatcagaggtgtacaattgtacccacaagacagccccacgacacgtttccgtgcgccgacatgccaccacgacataccggaaagaggccgtgataggacccttcgcataaccccctctagccaagcacaccacacctcaggtttcacccccgtccccagcgggcgatgggcagtcccctctcgtgcctaggtgaatccggaagccgcataggccgtcgcagggcccatccaaactccatcacgcccacccttgcctggatgcgtcagctagagaaaagctacactacaagcccagccgttgcccacgctggcttgtggtaagcacgataaattcttccagggtttcccgcgaaccggtccttaattgctatgggtgcgacaagcaaaaccatgcacccacagcccaccatgtgattcattttaattaaccaacaccaaagcggtggtactaaaccaacattatcatatgaacctacagtctatattttaaatgagatttccccattgtgtgctagttgaactaagcatggctaagcaactcctagtccaacgtctattcatgttataacccgagctaacaaaggagcagggtaccaaaatagcatggctgtaacaataggtaaacatcccatagtaacattataaaacgatgcagtatttgaagaaaaacaatagagcatttgcaatataggatcaacatgttcaagtgacaggcatgacttgccttgctctgcagctggaggaacctcggcgactatctcgaagtacaccggagcgtcggaagaaccggaatctaggcgacatacgaagcaaacaatacaaacaggctataagactactgaaacagagaacaaaaccatttttagtggattctacgcatttttcttgatttactgagacttgaatgggcttaaacggagctcggatgaattagttatgaattttagaagattcactgtgtttattactataacaaaaagtccttaaatcatttattgcgcaataattcccagggctgacgtcatcaagggggggcgccgacatgcggggcccaccggtcagcggctcgggagagagggaaaaggggcgccggcacgcgggccccactcggcagcggctcaaggggggcacggctggcaagcgggccccacggccccagctccacgggccgatgtaccggccaggcccggcatcaagccgaccagccggccatggcaaagcggcggcgcgcgcatgcgaccgccggcgacggcaaacggcggcacggacggcaggcggcggcgcgagcggcgacgaccgaacgcgacggcgagcgcacgaagagggcggcggcgcacgggAaaaaaagggaaggaaaggaaggggagggagacctcaccggaggggcggcaacggccggcggtggaaaacgagggaggcggcgaagaccggcgatgccgaggtgcggacaagcgacggcgacacctagggaaaaagagaggaggaattaagacagagggaaaccctcacggcgaccatccacgccggccggagtcggaggggagagagaactaactggcgacacgagggagatggggtttcggtgggattccggcgacgcaaagcggcggccgggaaaggtcttgcggcggcgaagctaGGggGGTGGCGGTGGCTTAGCGCGGCGACGGCTCTAGCGGCGGCAGCACACGGCCGGAGTGCGGCGGCGGGCGGCGGCGCAAGCGGCGGCGGCGCGAGCTCGGTAGGGGGCACGGGATGGAGCGGTGAGAGCGGAAAATGAGAGAGAAGGGCATGGGGAGCATTTTATAGGTGGAGGGGGAGGCGGACGTGGCCGGGAGGCGCCCCGATTTCGCCGGCGACGTGGGGGAGGAGAGAGAGAAGGTGGGGGGCGATTCAAAATCGAATCCCGCCCCTCTCGTGCGCAGGCGCGGCCGGAAGACGCGGGGAGAGGGGGCGGCGACGTGGCGTGGGCACGGGCGACGCGGCGTGGGCGCGGGGAAAGCGGAGGAGTGGGTGCGGCGACGGCGGTTGCGAGGTAGGAGACGGGCCCGACAGGTAGGGCCCACCTGTCGGCGTCCCGGGTGGGAGGAGGTAGGCGGCCGGCCCAGCGGAGGGGAGAGGAGGAAGGAGAATGGGCCGGCGGCCCACTCGAAAAGAAAAgaaaagggggaaaaagaaaaagaaaaaggaagaaaaggattttccctggaattaaaatattgcttgctcaattttaattggttaaaattatttctagggctctaaaaattcactaaaaatcttgttagcgaatttcgacatgtagaactcaaaagttccacatgtcagttccgattattatttgcattaatttattaaggtttactcttgctttacacaagtattttcttgagaccatttataacttcaatttaggcttgggaaagaactttggggtgtgacagacatagatacagatacctgaggaattgttgcttactccacatggtgacaagattacagctataattgatgctgtctacccagattttcagaccaactatgactgcatcccatatcttgctcagcgcgcaatagtctgtctagtaaatgcagttgttgatgaggttaatgatatgatgcttgccaaagtacctggagaagcaaaggactatcttagcagcgacactattgcaaatacacttgagaaagctgcggattttgatctgttgtatcccatagaatttctaaactcgatatccataaacaacttcccggaacatcacatatccctgaaaattggttcagcagttgtcctacttcgcaacatcaaccaatcacttggcctttgcaatgggacaagattactggttactcgacttggtgattttAtttttgagggcaaaatcatgactgggacaaatattggccagctggtctgtattccacggattgtcctaagtggaaatagtccgaagtggcctttcacgctccagcgcaggcaatttcctatcagactatgttatgcaatgacaataaacaaatgccaagggcagacattaggaaatgttggtgtatacctcaagaaccctatcttcacacatggatagctatatgttgctgtttcgcgagctacatcaaaggaaggactcaagttattgatagaagatgatgatggaaatccttgttccaccaccaagaacatcgtctacaacgaaatattatcgttgctgtagattagttttattgtggctatctctgcagcactgtgatggctcttttgtgaagctctttgttctgtgatcccatttgtcggtgcagctttcctattttgttgttcccttttgtttagcctttactgccagcttgtgttcgtatatgtgttgttcctgtttgatcacttgcttgttccagtgcctttcatgcgtgcttatcgattcttctttcttaatttccatatttctctcttgttactatcagctgcttttagacatgatttattaaaatgccctgcactgaaaataattctcagctccaaaactaaaaaacttatatgctccaccatagtcccttcagcaattacagctttgcgccttcatatcatgcagaacattgtttgtataattcccctctaacctgcatgatgtgttttctatgccctgcagatggattacagtctcctaaaggatgtcacacaggaatcacaccgttggcgcgtacgagtgcgggcaacccgcttctcggagttcaccacagctaatgagcctgacaagattttgcgccttgatttagtcctgcttgatgagCAGGCATAGCACcgagtacatgctttctttctctgcacactatttgcctccgcaccctcttacatattgaaacatcaacagggcgacatgatggatgcgcaaatcccaggacgccgcgttgttcaattcaagcctttgctaaaggaaggcgctgtgtattacatcaaatacttcgaagtcgccgaggcacgcccccagtataggcctgttgatcgactgttgatggcaaagttcactgctcacacaaccgttacagaagatactggaccaccatccacgttcccatcttatgcctgcaaaattctttcttttgatgaactcagagctcgggcttacaagaaagatattatttcaggtaagtctccttggcccagatcaatctatattattgcttattaatcttctccatttctagcttgctgccctcatttactcatatacagttttcctccctcatattcccatgtagatgctataggcataatgacagccatcgggccagtgcagactgtttcttatgcaggtgttatgaaagctgtgcttaatgaccatataaccaatggaaggtatgtgcgtatcgatacgttacctattccaaacatatttctgttctgggtgagtgaaagctaccatccaaaatgagcaacctatgcacggatagatcattattgcttttttcatgtgcatcatcgatttcttggaaacatatatgtttctccTtttttttctagacgaacattctctggcatcttgattagtagcaaatatggatggttaaaaagtcatctgcattattttccacttcttagttcttttatgtgcttgcagagaaactgtcgtcgtggcgttatggggtccccatgctacacaattccacgctgaaaacttgcagcagcaagcagacaatggacatgttgtcatgttatttgttggtttaactgttaaatttcgagaccgtaagaaataaattcctgttctattatccctcctatctcatttgcatattttcactgttctaactcacatgatgtgttctttcgtctttgacaggccagctagccctacagggtagcactgtctgtagatggtatcctaacgcaccaatccaggaaacaatctccctcataagcaggtgccacttagctctgctcttttcatacacatagacatccttctactttattcaacatattttttcgctaccttatgtgtcatgtagatcaatgcttttccctaacctacaaaccagagcactaacttctttcacatttgaagccttcacggtaacccacaggtggtcaggatgatagaggctaacttcggtcaaaaggaagctataaatgtcaaagtttctgatatttgtgaccttaatccccatgaggccttggtaatataacctacctcagcgctactagtgatcattatttccatcatatgttattagcgccatcctttacttgttccatttttcgcatgtcaaccagggcaatagctatgttgtcaatataatcatcagggacttggttcctgctgagccttggtggtatatagcatgcagcacctataagagaggcacagctagagaaggaaacgcatataaatgcccgagatgcagcactgatgcAatagaaacaaggtgctcttatcatatgcacacatgtagcttttctcaagtattttacatgataaaccaatctatatgctacaattcaatccatgtgtattgagaactgtctgaactgccttctataataggtacagagtagttatcatgggtatcgatccatcggatttggcaaacgatcaagccaaagctgctgagtttaccttctttggagaaatcggtgaacaattgattggcaggcctgttcttaacctggttgcatctgttcatggagcacgagatatagtaccaccagagatcaaagcaatttttggcagacaatatgtcattagaactagtgtgtcacgtggctcattgcaaagaaatcgggtatcctaccaggtggattcccttatgctaccccacccagatccaagccatgcaatttgtctacccagccatgatacttgcatgggctcttctggacatggctcaacatcagctaatgcagttgaaccacatgccatcgttttgtcttctactcaatctatgccaccttctacgccgtttgtgcttccagatacaaaggtataatctaattgtgttgtcttataaggatatgtgacctgttacatctaagttaccataatttcttagattatatcctttttgtataggacacaagggacagccatggtgatcagcatgaggcaacaccacctactccacaggctagcaatatattttatactcacatcaattatatgcatatgtctttgtcagaccttcctaaccattaatactttatcaggtcatagctatagcacatctagataaaaaacgtaaatcttctatggctgatgagaatcttggccatggagggttagtgccaatggaaaatttcatgttttactttgatttcttctcTttttcctcatgactcaaacaacttccatttgtagctcatctcctgatgaacatgatcgtcgcaagccttctgttgtgcacacactgttcgtagacaagctgccaccagagctgccaaaatgtgaccaactatactcaagcaactatgtatttcttgcctcctcatttgttatagcaaaaatgtgactctgctttacattcttcgtttcaggacttgagcctcccatgtgatatccccagagcgaagtgaccttttgcacctggcatggcaacgcgcatacttctctccctgattgaagcaaagctaaaatactttggtcaatctattttgcagtgccaacatagaaaagagaaatgttcttttgcgcaagccattagaccaatcgatattagttttacctgttacgggctcactacccctaatagctagccaaatgataaatgaattagtatcagcaatgtttggtgtctgtaatatatgcacgttctaacaaatatcactgcaagtgataagacatagtcttattaatagtactatatctattccgcttatactacttccttcctgagcaatctgcttacatttgtgccatagaatcaccacttctgttgtttcttatatatgaaaccattgtacctacgcatgtct
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| CDS seq | atggcgtacagcggtgacgggattggctgctgctcaCTGctccactacgcggagagccccatgaccatggccaggcgatggctgcactgctggattggggattctctgttggcgttttcacttgggggagggagttgcctccctcgtctactgctcgcaaagatggattacagtctcctaaaggatgtcacacaggaatcacaccgttggcgcgtacgagtgcgggcaacccgcttctcggagttcaccacagctaatgagcctgacaagattttgcgccttgatttagtcctgcttgatgagCAGggcgacatgatggatgcgcaaatcccaggacgccgcgttgttcaattcaagcctttgctaaaggaaggcgctgtgtattacatcaaatacttcgaagtcgccgaggcacgcccccagtataggcctgttgatcgactgttgatggcaaagttcactgctcacacaaccgttacagaagatactggaccaccatccacgttcccatcttatgcctgcaaaattctttcttttgatgaactcagagctcgggcttacaagaaagatattatttcagatgctataggcataatgacagccatcgggccagtgcagactgtttcttatgcaggtgttatgaaagctgtgcttaatgaccatataaccaatggaagagaaactgtcgtcgtggcgttatggggtccccatgctacacaattccacgctgaaaacttgcagcagcaagcagacaatggacatgttgtcatgttatttgttggtttaactgttaaatttcgagaccgccagctagccctacagggtagcactgtctgtagatggtatcctaacgcaccaatccaggaaacaatctccctcataagcagccttcacggtaacccacaggtggtcaggatgatagaggctaacttcggtcaaaaggaagctataaatgtcaaagtttctgatatttgtgaccttaatccccatgaggccttgggcaatagctatgttgtcaatataatcatcagggacttggttcctgctgagccttggtggtatatagcatgcagcacctataagagaggcacagctagagaaggaaacgcatataaatgcccgagatgcagcactgatgcAatagaaacaaggtacagagtagttatcatgggtatcgatccatcggatttggcaaacgatcaagccaaagctgctgagtttaccttctttggagaaatcggtgaacaattgattggcaggcctgttcttaacctggttgcatctgttcatggagcacgagatatagtaccaccagagatcaaagcaatttttggcagacaatatgtcattagaactagtgtgtcacgtggctcattgcaaagaaatcgggtatcctaccaggtggattcccttatgctaccccacccagatccaagccatgcaatttgtctacccagccatgatacttgcatgggctcttctggacatggctcaacatcagctaatgcagttgaaccacatgccatcgttttgtcttctactcaatctatgccaccttctacgccgtttgtgcttccagatacaaaggtcatagctatagcacatctagataaaaaacgtaaatcttctatggctgatgagaatcttggccatggaggctcatctcctgatgaacatgatcgtcgcaagccttctgttgtgcacacactgttcgtagacaagctgccaccagagctgccaaaatga
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| Protein seq | MAYSGDGIGCCSLLHYAESPMTMARRWLHCWIGDSLLAFSLGGGSCLPRLLLAKMDYSLLKDVTQESHRWRVRVRATRFSEFTTANEPDKILRLDLVLLDEQGDMMDAQIPGRRVVQFKPLLKEGAVYYIKYFEVAEARPQYRPVDRLLMAKFTAHTTVTEDTGPPSTFPSYACKILSFDELRARAYKKDIISDAIGIMTAIGPVQTVSYAGVMKAVLNDHITNGRETVVVALWGPHATQFHAENLQQQADNGHVVMLFVGLTVKFRDRQLALQGSTVCRWYPNAPIQETISLISSLHGNPQVVRMIEANFGQKEAINVKVSDICDLNPHEALGNSYVVNIIIRDLVPAEPWWYIACSTYKRGTAREGNAYKCPRCSTDAIETRYRVVIMGIDPSDLANDQAKAAEFTFFGEIGEQLIGRPVLNLVASVHGARDIVPPEIKAIFGRQYVIRTSVSRGSLQRNRVSYQVDSLMLPHPDPSHAICLPSHDTCMGSSGHGSTSANAVEPHAIVLSSTQSMPPSTPFVLPDTKVIAIAHLDKKRKSSMADENLGHGGSSPDEHDRRKPSVVHTLFVDKLPPELPK |
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| Function | Replication protein A 70 kDa DNA-binding subunit B [UniProtKB/Swiss-Prot:Q9SD82] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0042420 | OsLima_03g0042420.04 | Chr03 | 39124314 | 39127633 | + | NAM | ||
| CDS seq | atggattacagtctcctaaaggatgtcacacaggaatcacaccgttggcgcgtacgagtgcgggcaacccgcttctcggagttcaccacagctaatgagcctgacaagattttgcgccttgatttaggcgacatgatggatgcgcaaatcccaggacgccgcgttgttcaattcaagcctttgctaaaggaaggcgctgtgtattacatcaaatacttcgaagtcgccgaggcacgcccccagtataggcctgttgatcgactgttgatggcaaagttcactgctcacacaaccgttacagaagatactggaccaccatccacgttcccatcttatgcctgcaaaattctttcttttgatgaactcagagctcgggcttacaagaaagatattatttcagatgctataggcataatgacagccatcgggccagtgcagactgtttcttatgcaggtgttatgaaagctgtgcttaatgaccatataaccaatggaagagaaactgtcgtcgtggcgttatggggtccccatgctacacaattccacgctgaaaacttgcagcagcaagcagacaatggacatgttgtcatgttatttgttggtttaactgttaaatttcgagaccgccagctagccctacagggtagcactgtctgtagatggtatcctaacgcaccaatccaggaaacaatctccctcataagcagccttcacggtaacccacaggtggtcaggatgatagaggctaacttcggtcaaaaggaagctataaatgtcaaagtttctgatatttgtgaccttaatccccatgaggccttgggcaatagctatgttgtcaatataatcatcagggacttggttcctgctgagccttggtggtatatagcatgcagcacctataagagaggcacagctagagaaggaaacgcatataaatgcccgagatgcagcactgatgcAatagaaacaagagtagttatcatgggtatcgatccatcggatttggcaaacgatcaagccaaagctgctgagtttaccttctttggagaaatcggtgaacaattgattggcaggcctgttcttaacctggttgcatctgttcatggagcacgagatatagtaccaccagagatcaaagcaatttttggcagacaatatgtcattagaactagtgtgtcacgtggctcattgcaaagaaatcgggtatcctaccaggtggattcccttatgctaccccacccagatccaagccatgcaatttgtctacccagccatgatacttgcatgggctcttctggacatggctcaacatcagctaatgcagttgaaccacatgccatcgttttgtcttctactcaatctatgccaccttctacgccgtttgtgcttccagatacaaaggacacaagggacagccatggtgatcagcatgaggcaacaccacctactccacaggctagcaatatattttatactcacatcaattatatgcatatgtctttgtcagaccttcctaaccattaa
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| Protein seq | MDYSLLKDVTQESHRWRVRVRATRFSEFTTANEPDKILRLDLGDMMDAQIPGRRVVQFKPLLKEGAVYYIKYFEVAEARPQYRPVDRLLMAKFTAHTTVTEDTGPPSTFPSYACKILSFDELRARAYKKDIISDAIGIMTAIGPVQTVSYAGVMKAVLNDHITNGRETVVVALWGPHATQFHAENLQQQADNGHVVMLFVGLTVKFRDRQLALQGSTVCRWYPNAPIQETISLISSLHGNPQVVRMIEANFGQKEAINVKVSDICDLNPHEALGNSYVVNIIIRDLVPAEPWWYIACSTYKRGTAREGNAYKCPRCSTDAIETRVVIMGIDPSDLANDQAKAAEFTFFGEIGEQLIGRPVLNLVASVHGARDIVPPEIKAIFGRQYVIRTSVSRGSLQRNRVSYQVDSLMLPHPDPSHAICLPSHDTCMGSSGHGSTSANAVEPHAIVLSSTQSMPPSTPFVLPDTKDTRDSHGDQHEATPPTPQASNIFYTHINYMHMSLSDLPNH
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0042420 | OsLima_03g0042420.03 | Chr03 | 39113618 | 39127633 | + | NAM | ||
| CDS seq | atggattacagtctcctaaaggatgtcacacaggaatcacaccgttggcgcgtacgagtgcgggcaacccgcttctcggagttcaccacagctaatgagcctgacaagattttgcgccttgatttagtcctgcttgatgagCAGggcgacatgatggatgcgcaaatcccaggacgccgcgttgttcaattcaagcctttgctaaaggaaggcgctgtgtattacatcaaatacttcgaagtcgccgaggcacgcccccagtataggcctgttgatcgactgttgatggcaaagttcactgctcacacaaccgttacagaagatactggaccaccatccacgttcccatcttatgcctgcaaaattctttcttttgatgaactcagagctcgggcttacaagaaagatattatttcagatgctataggcataatgacagccatcgggccagtgcagactgtttcttatgcaggtgttatgaaagctgtgcttaatgaccatataaccaatggaagagaaactgtcgtcgtggcgttatggggtccccatgctacacaattccacgctgaaaacttgcagcagcaagcagacaatggacatgttgtcatgttatttgttggtttaactgttaaatttcgagaccgccagctagccctacagggtagcactgtctgtagatggtatcctaacgcaccaatccaggaaacaatctccctcataagcagccttcacggtaacccacaggtggtcaggatgatagaggctaacttcggtcaaaaggaagctataaatgtcaaagtttctgatatttgtgaccttaatccccatgaggccttgggcaatagctatgttgtcaatataatcatcagggacttggttcctgctgagccttggtggtatatagcatgcagcacctataagagaggcacagctagagaaggaaacgcatataaatgcccgagatgcagcactgatgcAatagaaacaaggtacagagtagttatcatgggtatcgatccatcggatttggcaaacgatcaagccaaagctgctgagtttaccttctttggagaaatcggtgaacaattgattggcaggcctgttcttaacctggttgcatctgttcatggagcacgagatatagtaccaccagagatcaaagcaatttttggcagacaatatgtcattagaactagtgtgtcacgtggctcattgcaaagaaatcgggtatcctaccaggtggattcccttatgctaccccacccagatccaagccatgcaatttgtctacccagccatgatacttgcatgggctcttctggacatggctcaacatcagctaatgcagttgaaccacatgccatcgttttgtcttctactcaatctatgccaccttctacgccgtttgtgcttccagatacaaaggacacaagggacagccatggtgatcagcatgaggcaacaccacctactccacagctcatctcctga
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| Protein seq | MDYSLLKDVTQESHRWRVRVRATRFSEFTTANEPDKILRLDLVLLDEQGDMMDAQIPGRRVVQFKPLLKEGAVYYIKYFEVAEARPQYRPVDRLLMAKFTAHTTVTEDTGPPSTFPSYACKILSFDELRARAYKKDIISDAIGIMTAIGPVQTVSYAGVMKAVLNDHITNGRETVVVALWGPHATQFHAENLQQQADNGHVVMLFVGLTVKFRDRQLALQGSTVCRWYPNAPIQETISLISSLHGNPQVVRMIEANFGQKEAINVKVSDICDLNPHEALGNSYVVNIIIRDLVPAEPWWYIACSTYKRGTAREGNAYKCPRCSTDAIETRYRVVIMGIDPSDLANDQAKAAEFTFFGEIGEQLIGRPVLNLVASVHGARDIVPPEIKAIFGRQYVIRTSVSRGSLQRNRVSYQVDSLMLPHPDPSHAICLPSHDTCMGSSGHGSTSANAVEPHAIVLSSTQSMPPSTPFVLPDTKDTRDSHGDQHEATPPTPQLIS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0042420 | OsLima_03g0042420.02 | Chr03 | 39113618 | 39127633 | + | NAM | ||
| CDS seq | atggattacagtctcctaaaggatgtcacacaggaatcacaccgttggcgcgtacgagtgcgggcaacccgcttctcggagttcaccacagctaatgagcctgacaagattttgcgccttgatttagtcctgcttgatgagCAGggcgacatgatggatgcgcaaatcccaggacgccgcgttgttcaattcaagcctttgctaaaggaaggcgctgtgtattacatcaaatacttcgaagtcgccgaggcacgcccccagtataggcctgttgatcgactgttgatggcaaagttcactgctcacacaaccgttacagaagatactggaccaccatccacgttcccatcttatgcctgcaaaattctttcttttgatgaactcagagctcgggcttacaagaaagatattatttcagatgctataggcataatgacagccatcgggccagtgcagactgtttcttatgcaggtgttatgaaagctgtgcttaatgaccatataaccaatggaagagaaactgtcgtcgtggcgttatggggtccccatgctacacaattccacgctgaaaacttgcagcagcaagcagacaatggacatgttgtcatgttatttgttggtttaactgttaaatttcgagaccgccagctagccctacagggtagcactgtctgtagatggtatcctaacgcaccaatccaggaaacaatctccctcataagcagccttcacggtaacccacaggtggtcaggatgatagaggctaacttcggtcaaaaggaagctataaatgtcaaagtttctgatatttgtgaccttaatccccatgaggccttgggcaatagctatgttgtcaatataatcatcagggacttggttcctgctgagccttggtggtatatagcatgcagcacctataagagaggcacagctagagaaggaaacgcatataaatgcccgagatgcagcactgatgcAatagaaacaaggtacagagtagttatcatgggtatcgatccatcggatttggcaaacgatcaagccaaagctgctgagtttaccttctttggagaaatcggtgaacaattgattggcaggcctgttcttaacctggttgcatctgttcatggagcacgagatatagtaccaccagagatcaaagcaatttttggcagacaatatgtcattagaactagtgtgtcacgtggctcattgcaaagaaatcgggtatcctaccaggtggattcccttatgctaccccacccagatccaagccatgcaatttgtctacccagccatgatacttgcatgggctcttctggacatggctcaacatcagctaatgcagttgaaccacatgccatcgttttgtcttctactcaatctatgccaccttctacgccgtttgtgcttccagatacaaaggacacaagggacagccatggtgatcagcatgaggcaacaccacctactccacaggtcatagctatagcacatctagataaaaaacgtaaatcttctatggctgatgagaatcttggccatggaggctcatctcctgatgaacatgatcgtcgcaagccttctgttgtgcacacactgttcgtagacaagctgccaccagagctgccaaaatga
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| Protein seq | MDYSLLKDVTQESHRWRVRVRATRFSEFTTANEPDKILRLDLVLLDEQGDMMDAQIPGRRVVQFKPLLKEGAVYYIKYFEVAEARPQYRPVDRLLMAKFTAHTTVTEDTGPPSTFPSYACKILSFDELRARAYKKDIISDAIGIMTAIGPVQTVSYAGVMKAVLNDHITNGRETVVVALWGPHATQFHAENLQQQADNGHVVMLFVGLTVKFRDRQLALQGSTVCRWYPNAPIQETISLISSLHGNPQVVRMIEANFGQKEAINVKVSDICDLNPHEALGNSYVVNIIIRDLVPAEPWWYIACSTYKRGTAREGNAYKCPRCSTDAIETRYRVVIMGIDPSDLANDQAKAAEFTFFGEIGEQLIGRPVLNLVASVHGARDIVPPEIKAIFGRQYVIRTSVSRGSLQRNRVSYQVDSLMLPHPDPSHAICLPSHDTCMGSSGHGSTSANAVEPHAIVLSSTQSMPPSTPFVLPDTKDTRDSHGDQHEATPPTPQVIAIAHLDKKRKSSMADENLGHGGSSPDEHDRRKPSVVHTLFVDKLPPELPK
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0042420 | OsLima_03g0042420.01 | Chr03 | 39113414 | 39127540 | + | NAM | ||
| CDS seq | atggcgtacagcggtgacgggattggctgctgctcaCTGctccactacgcggagagccccatgaccatggccaggcgatggctgcactgctggattggggattctctgttggcgttttcacttgggggagggagttgcctccctcgtctactgctcgcaaagatggattacagtctcctaaaggatgtcacacaggaatcacaccgttggcgcgtacgagtgcgggcaacccgcttctcggagttcaccacagctaatgagcctgacaagattttgcgccttgatttagtcctgcttgatgagCAGggcgacatgatggatgcgcaaatcccaggacgccgcgttgttcaattcaagcctttgctaaaggaaggcgctgtgtattacatcaaatacttcgaagtcgccgaggcacgcccccagtataggcctgttgatcgactgttgatggcaaagttcactgctcacacaaccgttacagaagatactggaccaccatccacgttcccatcttatgcctgcaaaattctttcttttgatgaactcagagctcgggcttacaagaaagatattatttcagatgctataggcataatgacagccatcgggccagtgcagactgtttcttatgcaggtgttatgaaagctgtgcttaatgaccatataaccaatggaagagaaactgtcgtcgtggcgttatggggtccccatgctacacaattccacgctgaaaacttgcagcagcaagcagacaatggacatgttgtcatgttatttgttggtttaactgttaaatttcgagaccgccagctagccctacagggtagcactgtctgtagatggtatcctaacgcaccaatccaggaaacaatctccctcataagcagccttcacggtaacccacaggtggtcaggatgatagaggctaacttcggtcaaaaggaagctataaatgtcaaagtttctgatatttgtgaccttaatccccatgaggccttgggcaatagctatgttgtcaatataatcatcagggacttggttcctgctgagccttggtggtatatagcatgcagcacctataagagaggcacagctagagaaggaaacgcatataaatgcccgagatgcagcactgatgcAatagaaacaaggtacagagtagttatcatgggtatcgatccatcggatttggcaaacgatcaagccaaagctgctgagtttaccttctttggagaaatcggtgaacaattgattggcaggcctgttcttaacctggttgcatctgttcatggagcacgagatatagtaccaccagagatcaaagcaatttttggcagacaatatgtcattagaactagtgtgtcacgtggctcattgcaaagaaatcgggtatcctaccaggtggattcccttatgctaccccacccagatccaagccatgcaatttgtctacccagccatgatacttgcatgggctcttctggacatggctcaacatcagctaatgcagttgaaccacatgccatcgttttgtcttctactcaatctatgccaccttctacgccgtttgtgcttccagatacaaaggtcatagctatagcacatctagataaaaaacgtaaatcttctatggctgatgagaatcttggccatggaggctcatctcctgatgaacatgatcgtcgcaagccttctgttgtgcacacactgttcgtagacaagctgccaccagagctgccaaaatga
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| Protein seq | MAYSGDGIGCCSLLHYAESPMTMARRWLHCWIGDSLLAFSLGGGSCLPRLLLAKMDYSLLKDVTQESHRWRVRVRATRFSEFTTANEPDKILRLDLVLLDEQGDMMDAQIPGRRVVQFKPLLKEGAVYYIKYFEVAEARPQYRPVDRLLMAKFTAHTTVTEDTGPPSTFPSYACKILSFDELRARAYKKDIISDAIGIMTAIGPVQTVSYAGVMKAVLNDHITNGRETVVVALWGPHATQFHAENLQQQADNGHVVMLFVGLTVKFRDRQLALQGSTVCRWYPNAPIQETISLISSLHGNPQVVRMIEANFGQKEAINVKVSDICDLNPHEALGNSYVVNIIIRDLVPAEPWWYIACSTYKRGTAREGNAYKCPRCSTDAIETRYRVVIMGIDPSDLANDQAKAAEFTFFGEIGEQLIGRPVLNLVASVHGARDIVPPEIKAIFGRQYVIRTSVSRGSLQRNRVSYQVDSLMLPHPDPSHAICLPSHDTCMGSSGHGSTSANAVEPHAIVLSSTQSMPPSTPFVLPDTKVIAIAHLDKKRKSSMADENLGHGGSSPDEHDRRKPSVVHTLFVDKLPPELPK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr03 | 39126090 | 39126216 | + | OsLima_03g0042420.01,OsLima_03g0042420.02,OsLima_03g0042420.03 | OsLima_03g0042420.02,OsLima_03g0042420.01,OsLima_03g0042420.04,OsLima_03g0042420.03 | All |
| A3 | Chr03 | 39126645 | 39126869 | + | OsLima_03g0042420.04 | OsLima_03g0042420.01,OsLima_03g0042420.04 | All |
| RI | Chr03 | 39126735 | 39127105 | + | OsLima_03g0042420.04 | OsLima_03g0042420.04,OsLima_03g0042420.03 | All |
| SE | Chr03 | 39126645 | 39126869 | + | OsLima_03g0042420.02 | OsLima_03g0042420.02,OsLima_03g0042420.01 | All |
| SE | Chr03 | 39126788 | 39127020 | + | OsLima_03g0042420.02 | OsLima_03g0042420.02,OsLima_03g0042420.03 | All |
| A5 | Chr03 | 39124439 | 39124536 | + | OsLima_03g0042420.01,OsLima_03g0042420.02,OsLima_03g0042420.03 | OsLima_03g0042420.02,OsLima_03g0042420.01,OsLima_03g0042420.04,OsLima_03g0042420.03 | All |
| AF | Chr03 | 39113414 | 39113834 | + | OsLima_03g0042420.01 | OsLima_03g0042420.02,OsLima_03g0042420.01,OsLima_03g0042420.03 | All |
| MX | Chr03 | 39126645 | 39127020 | + | OsLima_03g0042420.03 | OsLima_03g0042420.01,OsLima_03g0042420.03 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0855700 | RBH | 8.259602 | 9.029697 | 10.913931 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g63870 | RBH | 4.615403 | 4.461754 | 2.141360 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0855700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0042630 | RBH | 1.743245 | 14.798334 | 9.287885 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0042300 | RBH | 0.906937 | 2.877776 | 4.708432 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0042340 | RBH | 1.737289 | 6.541905 | 14.873166 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0042600 | RBH | 0.422458 | 0.094807 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0042170 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0617400 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0041870 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0618600 | RBH | 0.0044375 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0025120 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0042380 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0042070 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0042110 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0042190 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G041940 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0041590 | RBH | 0.0 | 0.0 | 0.0 |
