Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0040580 | OGI:08032140 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:37976364-37977005 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttatgcattttgtggatggctagaggtatcacccgtcccttcttcatgaccaggagaagaaacttcagcactaatcatagcagagagaacttgagcacttgactgatcaattggatctgcagttaccacaccagagacaccttgaatagttgaatcaactagatttgcaatgccttcaataggttcatatccctttttataaataacttcaacaccaaactctaccagcttatcatccaacgtagaattcatccactggccAaattcttcattggttgtcaacttacattcagtgccaatttcagtgtccaaaccccaaactctaatttcttggcttggcccccagattatcttgctagccatttcatcatgaaatttatccaaattatacccactgctaatatcaacccaccaatcatagtcttgctctgacattggtagcattccatactctagattcgcaacatacttagcaaccctaacaagaaatctaagcgcattgccaggatcaatcctgacataaacagattcataaaaaaaatggagttagaacacatctaactccatgcatgcaacacaatacaagcaggaagggcaagagagaaaatgaacttaccaagaaggacaaactgagggcttcat
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| CDS seq | atgaagccctcagtttgtccttcttggattgatcctggcaatgcgcttagatttcttgttagggttgctaagtatgttgcgaatctagagtatggaatgctaccaatgtcagagcaagactatgattggtgggttgatattagcagtgggtataatttggataaatttcatgatgaaatggctagcaagataatctgggggccaagccaagaaattagagtttggggtttggacactgaaattggcactgaatgtaagttgacaaccaatgaagaattTggccagtggatgaattctacgttggatgataagctggtagagtttggtgttgaagttatttataaaaagggatatgaacctattgaaggcattgcaaatctagttgattcaactattcaaggtgtctctggtgtggtaactgcagatccaattgatcagtcaagtgctcaagttctctctgctatgattagtgctgaagtttcttctcctggtcatgaagaagggacgggtgatacctctagccatccacaaaatgcataa
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| Protein seq | MKPSVCPSWIDPGNALRFLVRVAKYVANLEYGMLPMSEQDYDWWVDISSGYNLDKFHDEMASKIIWGPSQEIRVWGLDTEIGTECKLTTNEEFGQWMNSTLDDKLVEFGVEVIYKKGYEPIEGIANLVDSTIQGVSGVVTADPIDQSSAQVLSAMISAEVSSPGHEEGTGDTSSHPQNA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0040580 | OsLima_03g0040580.01 | Chr03 | 37976364 | 37977005 | - | NAM | ||
| CDS seq | atgaagccctcagtttgtccttcttggattgatcctggcaatgcgcttagatttcttgttagggttgctaagtatgttgcgaatctagagtatggaatgctaccaatgtcagagcaagactatgattggtgggttgatattagcagtgggtataatttggataaatttcatgatgaaatggctagcaagataatctgggggccaagccaagaaattagagtttggggtttggacactgaaattggcactgaatgtaagttgacaaccaatgaagaattTggccagtggatgaattctacgttggatgataagctggtagagtttggtgttgaagttatttataaaaagggatatgaacctattgaaggcattgcaaatctagttgattcaactattcaaggtgtctctggtgtggtaactgcagatccaattgatcagtcaagtgctcaagttctctctgctatgattagtgctgaagtttcttctcctggtcatgaagaagggacgggtgatacctctagccatccacaaaatgcataa
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| Protein seq | MKPSVCPSWIDPGNALRFLVRVAKYVANLEYGMLPMSEQDYDWWVDISSGYNLDKFHDEMASKIIWGPSQEIRVWGLDTEIGTECKLTTNEEFGQWMNSTLDDKLVEFGVEVIYKKGYEPIEGIANLVDSTIQGVSGVVTADPIDQSSAQVLSAMISAEVSSPGHEEGTGDTSSHPQNA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g11440 | SBH | 0.971606 | 0.353106 | 0.959780 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0023150 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0014710 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0040240 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0236800 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0040000 | RBH | 0.0 | 0.0 | 0.834742 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0597600 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0022200 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0012010 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0011890 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0040250 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0011890 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G012090 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0004240 | SBH | 0.0 | 0.0 | 0.0 |
