Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0040280 | OGI:03096900 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:37797345-37799863 | ||||||||
| Gene Symbol | RLCK120, OsRLCK120 | ||||||||||
| DNA seq | attgaacataggtacataacatgatagatgcaagccttccaagaactgagaattttcaagttaactttacaaattACaaatgttcttacataatataatcaacctatagtacagaacaatctttctaactttcataagaaagattgttagacccaacccctcatattttgtattcacaaagcatggcggcatggtagcttaaagatgataaattaattaccaacaataattaattcatctcaaaatctcaacctaagtaggaacttaggatcacatcgttgcatgctaaactaccttaacccaatcggagctcctgtcttgagtcggcgccgcggcgacggcggcggcggcggcgggcgcgtcctgccggcggtggtattccctcctgaccgaccacagcgcctccgtgcaccgccgcatcgacggccgctccttcctcgccggcgcgacgcactgctcggcgagctccatcaccttctccaccgtcgccaccgacgccgggctcctcctgatcctggggtccatggccaccaccacctcccctcccctgaacctctgcaacgcctgcaatctcatcgcatcgctgtgagttttccatctcttgcggtgtgttcgtgcttgcgcgtgcgattggattggattggtttggcttggtttcttacccatttcgtggtggggcggggatcgaggtcgcggcggcgctcgatgggcgggcggccggtgacgagctcgacgaggaggacgccgaaggagtagacgtcgctcttgtcggtgagctcgtacgtgctcaggtactccgggtccacgtacccggcggcgctcttcccctgcgtgtcctccgactccgagctctcgccgccggccatccgcgccagcccgacgccggccagcttcgccgtcagcgtgtccgtcaggagcacgttcgatgaccggacgttccggtggatgatccgctgctctgcaaacggcgagtttcagtttagaattcagacttccacttctcatatcatcttcatatctctgaaatttCagagaatatatgtcacttacctttgaattcgtgcaggtatgtgatagcatgagctacgtcgatcgcgatgttgagccgttgcgcaagttctaaaccatttccacaggattctgcagtgtgttgcatttgcacaaatcctgatcaattcctcctactaggtactagaattatttcgaatagatagtaacagtggtactattacagactagaatcttcttggcattgtagtttactgcaactgaatgaatcgatcaggggcaaaacgtaccatctaagtgttcccttaaggaaccattgctgacatactcaacgacggtcaggctctcatcttcgcgctcaaagaatcctaggaacctcactagattcttatgatcaattttctgaagaatttcaagctctctccgaagctcagctgatgcatactgactgtttaactgttgcaacagaagacatggttactacttattaccaagtaccaatctccaacctacatacctcatgaaaaattgctgaatatgcgtattccctttgtttccatacctttctggcacatttgatggcaatttcagacccatccctgagcttccctctgtagatgctgctataacttccctgctttattatgttcttgtcactgaagtttgaggttgccttaaatatctctgcaactgtgagctctgtgctttcttggggataccctgtccctgctgcacttaaatttgtcatttctccattctgattttcacacggtGggggatattcatgtttatctagtgcTAAaaTaaaagtaaattgcagtttttcacactaattgtttgctgcttgatatttccccttttaacaggtgacctaagtacagttaatctgcaattaaatttactctacttaaccagcaaaacaaccaagaactgaagaattggaaggcaccagaaggcagaattgctgggcaaattcctcgatagaggaatagttcttacctggatcaatcgagacttggtaacctgtacttctgctcccttgagaaatcgtcgtccgagaaatctcaagttcatcctcatttctggacttcctgggcacaaagcaactgaaaactccggcgagactctgcgccgccgccctgaacgagccgctgctgcgaaccgagctcctgctgatctctgaagatggaacgctgtaagaggaagcctgacgacggtagacctcaggagggcatgattggtatctctggtaagtaggcttgcaagaactgatccctgaaacttctttgccctggctggtggtgctgaactgcctcttggctgcaggcaattccatggcaagaagatcgagaggAaaaatttcttggtctgattattgcttcatcgtttttcctttggatgcataaatatggggacgatgacttggtgccgttcaatggcacaagcctttgctgagcgtgatgttgctgtcctggagctaggtcaacggtgtgctccgacgacctgcaggt
More
|
||||||||||
| CDS seq | atggaattgcctgcagccaagaggcagttcagcaccaccagccagggcaaagaagtttcagggatcagttcttgcaagcctacttaccagagataccaatcatgccctcctgaggtctaccgtcgtcaggcttcctcttacagcgttccatcttcagagatcagcaggagctcggttcgcagcagcggctcgttcagggcggcggcgcagagtctcgccggagttttcagttgctttgtgcccaggaagtccagaaatgaggatgaacttgagatttctcggacgacgatttctcaagggagcagaagtacaggttaccaagtctcgattgatccagcagggacagggtatccccaagaaagcacagagctcacagttgcagagatatttaaggcaacctcaaacttcagtgacaagaacataataaagcagggaagttatagcagcatctacagagggaagctcagggatgggtctgaaattgccatcaaatgtgccagaaagttaaacagtcagtatgcatcagctgagcttcggagagagcttgaaattcttcagaaaattgatcataagaatctagtgaggttcctaggattctttgagcgcgaagatgagagcctgaccgtcgttgagtatgtcagcaatggttccttaagggaacacttagatgaatcctgtggaaatggtttagaacttgcgcaacggctcaacatcgcgatcgacgtagctcatgctatcacatacctgcacgaattcaaagagcagcggatcatccaccggaacgtccggtcatcgaacgtgctcctgacggacacgctgacggcgaagctggccggcgtcgggctggcgcggatggccggcggcgagagctcggagtcggaggacacgcaggggaagagcgccgccgggtacgtggacccggagtacctgagcacgtacgagctcaccgacaagagcgacgtctactccttcggcgtcctcctcgtcgagctcgtcaccggccgcccgcccatcgagcgccgccgcgacctcgatccccgccccaccacgaaatgggcgttgcagaggttcaggggaggggaggtggtggtggccatggaccccaggatcaggaggagcccggcgtcggtggcgacggtggagaaggtgatggagctcgccgagcagtgcgtcgcgccggcgaggaaggagcggccgtcgatgcggcggtgcacggaggcgctgtggtcggtcaggagggaataccaccgccggcaggacgcgcccgccgccgccgccgccgtcgccgcggcgccgactcaagacaggagctccgattgggttaaggtagtttag
More
|
||||||||||
| Protein seq | MELPAAKRQFSTTSQGKEVSGISSCKPTYQRYQSCPPEVYRRQASSYSVPSSEISRSSVRSSGSFRAAAQSLAGVFSCFVPRKSRNEDELEISRTTISQGSRSTGYQVSIDPAGTGYPQESTELTVAEIFKATSNFSDKNIIKQGSYSSIYRGKLRDGSEIAIKCARKLNSQYASAELRRELEILQKIDHKNLVRFLGFFEREDESLTVVEYVSNGSLREHLDESCGNGLELAQRLNIAIDVAHAITYLHEFKEQRIIHRNVRSSNVLLTDTLTAKLAGVGLARMAGGESSESEDTQGKSAAGYVDPEYLSTYELTDKSDVYSFGVLLVELVTGRPPIERRRDLDPRPTTKWALQRFRGGEVVVAMDPRIRRSPASVATVEKVMELAEQCVAPARKERPSMRRCTEALWSVRREYHRRQDAPAAAAAVAAAPTQDRSSDWVKVV |
||||||||||
| Function | Calmodulin-binding receptor-like cytoplasmic kinase 2 [UniProtKB/Swiss-Prot:Q8VZJ9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0040280 | OsLima_03g0040280.01 | Chr03 | 37797345 | 37799863 | - | NAM | ||
| CDS seq | atggaattgcctgcagccaagaggcagttcagcaccaccagccagggcaaagaagtttcagggatcagttcttgcaagcctacttaccagagataccaatcatgccctcctgaggtctaccgtcgtcaggcttcctcttacagcgttccatcttcagagatcagcaggagctcggttcgcagcagcggctcgttcagggcggcggcgcagagtctcgccggagttttcagttgctttgtgcccaggaagtccagaaatgaggatgaacttgagatttctcggacgacgatttctcaagggagcagaagtacaggttaccaagtctcgattgatccagggacagggtatccccaagaaagcacagagctcacagttgcagagatatttaaggcaacctcaaacttcagtgacaagaacataataaagcagggaagttatagcagcatctacagagggaagctcagggatgggtctgaaattgccatcaaatgtgccagaaagttaaacagtcagtatgcatcagctgagcttcggagagagcttgaaattcttcagaaaattgatcataagaatctagtgaggttcctaggattctttgagcgcgaagatgagagcctgaccgtcgttgagtatgtcagcaatggttccttaagggaacacttagatgaatcctgtggaaatggtttagaacttgcgcaacggctcaacatcgcgatcgacgtagctcatgctatcacatacctgcacgaattcaaagagcagcggatcatccaccggaacgtccggtcatcgaacgtgctcctgacggacacgctgacggcgaagctggccggcgtcgggctggcgcggatggccggcggcgagagctcggagtcggaggacacgcaggggaagagcgccgccgggtacgtggacccggagtacctgagcacgtacgagctcaccgacaagagcgacgtctactccttcggcgtcctcctcgtcgagctcgtcaccggccgcccgcccatcgagcgccgccgcgacctcgatccccgccccaccacgaaatgggcgttgcagaggttcaggggaggggaggtggtggtggccatggaccccaggatcaggaggagcccggcgtcggtggcgacggtggagaaggtgatggagctcgccgagcagtgcgtcgcgccggcgaggaaggagcggccgtcgatgcggcggtgcacggaggcgctgtggtcggtcaggagggaataccaccgccggcaggacgcgcccgccgccgccgccgccgtcgccgcggcgccgactcaagacaggagctccgattgggttaaggtagtttag
More
|
|||||||
| Protein seq | MELPAAKRQFSTTSQGKEVSGISSCKPTYQRYQSCPPEVYRRQASSYSVPSSEISRSSVRSSGSFRAAAQSLAGVFSCFVPRKSRNEDELEISRTTISQGSRSTGYQVSIDPGTGYPQESTELTVAEIFKATSNFSDKNIIKQGSYSSIYRGKLRDGSEIAIKCARKLNSQYASAELRRELEILQKIDHKNLVRFLGFFEREDESLTVVEYVSNGSLREHLDESCGNGLELAQRLNIAIDVAHAITYLHEFKEQRIIHRNVRSSNVLLTDTLTAKLAGVGLARMAGGESSESEDTQGKSAAGYVDPEYLSTYELTDKSDVYSFGVLLVELVTGRPPIERRRDLDPRPTTKWALQRFRGGEVVVAMDPRIRRSPASVATVEKVMELAEQCVAPARKERPSMRRCTEALWSVRREYHRRQDAPAAAAAVAAAPTQDRSSDWVKVV
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0040280 | OsLima_03g0040280.02 | Chr03 | 37797345 | 37799863 | - | NAM | ||
| CDS seq | atggaattgcctgcagccaagaggcagttcagcaccaccagccagggcaaagaagtttcagggatcagttcttgcaagcctacttaccagagataccaatcatgccctcctgaggtctaccgtcgtcaggcttcctcttacagcgttccatcttcagagatcagcaggagctcggttcgcagcagcggctcgttcagggcggcggcgcagagtctcgccggagttttcagttgctttgtgcccaggaagtccagaaatgaggatgaacttgagatttctcggacgacgatttctcaagggagcagaagtacaggttaccaagtctcgattgatccagcagggacagggtatccccaagaaagcacagagctcacagttgcagagatatttaaggcaacctcaaacttcagtgacaagaacataataaagcagggaagttatagcagcatctacagagggaagctcagggatgggtctgaaattgccatcaaatgtgccagaaagttaaacagtcagtatgcatcagctgagcttcggagagagcttgaaattcttcagaaaattgatcataagaatctagtgaggttcctaggattctttgagcgcgaagatgagagcctgaccgtcgttgagtatgtcagcaatggttccttaagggaacacttagatgaatcctgtggaaatggtttagaacttgcgcaacggctcaacatcgcgatcgacgtagctcatgctatcacatacctgcacgaattcaaagagcagcggatcatccaccggaacgtccggtcatcgaacgtgctcctgacggacacgctgacggcgaagctggccggcgtcgggctggcgcggatggccggcggcgagagctcggagtcggaggacacgcaggggaagagcgccgccgggtacgtggacccggagtacctgagcacgtacgagctcaccgacaagagcgacgtctactccttcggcgtcctcctcgtcgagctcgtcaccggccgcccgcccatcgagcgccgccgcgacctcgatccccgccccaccacgaaatgggcgttgcagaggttcaggggaggggaggtggtggtggccatggaccccaggatcaggaggagcccggcgtcggtggcgacggtggagaaggtgatggagctcgccgagcagtgcgtcgcgccggcgaggaaggagcggccgtcgatgcggcggtgcacggaggcgctgtggtcggtcaggagggaataccaccgccggcaggacgcgcccgccgccgccgccgccgtcgccgcggcgccgactcaagacaggagctccgattgggttaaggtagtttag
More
|
|||||||
| Protein seq | MELPAAKRQFSTTSQGKEVSGISSCKPTYQRYQSCPPEVYRRQASSYSVPSSEISRSSVRSSGSFRAAAQSLAGVFSCFVPRKSRNEDELEISRTTISQGSRSTGYQVSIDPAGTGYPQESTELTVAEIFKATSNFSDKNIIKQGSYSSIYRGKLRDGSEIAIKCARKLNSQYASAELRRELEILQKIDHKNLVRFLGFFEREDESLTVVEYVSNGSLREHLDESCGNGLELAQRLNIAIDVAHAITYLHEFKEQRIIHRNVRSSNVLLTDTLTAKLAGVGLARMAGGESSESEDTQGKSAAGYVDPEYLSTYELTDKSDVYSFGVLLVELVTGRPPIERRRDLDPRPTTKWALQRFRGGEVVVAMDPRIRRSPASVATVEKVMELAEQCVAPARKERPSMRRCTEALWSVRREYHRRQDAPAAAAAVAAAPTQDRSSDWVKVV
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr03 | 37799078 | 37799352 | - | OsLima_03g0040280.02 | OsLima_03g0040280.02,OsLima_03g0040280.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.123940 | 0.203079 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0825800 | RBH | 0.319368 | 0.716004 | 2.750139 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g61060 | RBH | 0.208230 | 0.797023 | 0.697075 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0825800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0040420 | RBH | 0.631728 | 8.420654 | 1.314282 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0040100 | RBH | 0.000000 | 0.000000 | 0.339232 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0040180 | RBH | 1.484472 | 7.361122 | 2.621462 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0040390 | RBH | 0.199199 | 0.068351 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0039950 | RBH | 1.615056 | 1.007561 | 3.166120 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0591800 | RBH | 3.946213 | 13.7122295 | 1.5254555 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0039690 | RBH | 0.125634 | 0.341322 | 0.249445 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0594600 | RBH | 4.9377445 | 12.2415005 | 4.604472 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0040190 | RBH | 0.235220 | 12.584225 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0039870 | RBH | 1.364850 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0039950 | RBH | 0.284833 | 0.900405 | 0.539164 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0040000 | RBH | 0.269877 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G039740 | RBH | 0.293188 | 1.062545 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0039490 | RBH | 0.397305 | 15.932143 | 1.111005 |
