Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0039930 | OGI:03096340 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:37604341-37607097 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcatttattatgctccagatagatcaagatcccattttcatgcatgcagcgggcagaatccataacctcacactgtcaagagatcaaaatttaatgatgcctcaggattgatcgatccaatctattggtgtatgtacaaaagaaaagttcaaccttgataattgatattttctgcaaaatcaagtgaattattgtcagcaaacatggatcaaaattagaaaaacatgaaaacggcaatcagaataaatagtactccatccatcccaaaatataagggattcgtaatactaggatatgtcacatccacccaaaatcccttatattttgggacggtgggagtatgaggcaggaaccctctgcacttgaagatggcctaatttGttttttgcaattaacttgtgctcatcatgaaatttccaaattttcgtatgaagcttatgcgtattttgaaataagacaaaacttgtgtatatcctaaataagatgaagacttgtgcatcagaaatgtgggcatcgTAtattcagatagactgtcaaaatccagaacacactttctgagtgtgttactgtataaaaatgttggactgctcacagattagcatcacagtgatttttgttggtgtttctctaggccttttagaacaacctttgatgcaagaactggggatgtgcatacggttcatttgcataaaagttatgaattatactgacagctgatccaaaaagaaaagcatgtatcaagaagactcagtttacaagaagaagtacctgaattatattccaattctgattccatcgtccttgaataagcatcacatttttctgtggaaaacctttgtgttgcaatgcagatgtgtgagacttgcaggagctccctggaaaattcattagcatcttgtccaaaacagaataaccttgtaaaacacaatttcatcaccagaaatccttgcatgagcaggaaccatccttgaagcgatggaaacgactccggtcacgcactacaatctcccgtcgataaacctgtgaaatgcactttatagctgcatgacaatccgagcacacacgtaggttcttaaccactcggacctgtgttccaggaggagttctcagtagtgcaaatgcaattgccagcttctcactgtgccactgaagtgcaccctccttatcttcctcatcaagatcaagtaagacctctgaggtagctgcaatgtgcccaatgcgccttagctctcttgccatttcctcaaccatccggtatatatccttgtactgcgggtgagactcatctccggctatgaactcatggacCTctccatcaagctcaactatactacagcctggcactttcttgattcctctcttgctcaTCtctctccttatctctgacttctccttccatctctgtgttagtgcaaagacattcgagagcatgatatagttggcctcatgggccgggtactcatgaagaaggctccttgtgatgctttcacctagctcaaggcggccatgcgcacgacaagcagaaacaagtgatcgccatattactgggttcggttgtataggcattgtacggacgaattccatcgcccgctcaaccatgccagcccgaccaaacatgtcaaccatgcaaccatagtgctcaatcttaggctcaatgccatactccactttcatggcatcaaagtagccacagccttcatccaccataccagcatggctgcaagctgtgagcaccccaatgaaggcaacatcatcaggtggaacacctgcaaccttcatctcttcaaacactcgcacagcctccttcccacgaccctccatcgcaagcgcatcaatcaccgatgtccatgaaacaacactccgctgctgcatcccctcaaacacagccaccgccccatccacatctccacacttagcgagcgtgtcgatcagtgcattgcacagcgtcacagacttcccgatcccctctctctccacaaagcgtcggacccatcgagccagctcaagtgcacccaaatctgtggccgccgccaggactccaatcactgtcacctcatcggcctgtaCcccattggcctgcatctccctgaagagctcgacagcatcactcgacagccccCCAcgcacatacccgccgatcatcgcactccaggtaacggcactctccttgggcattctatcaaacacattccgcgcgtcgccaaggaacccgccgccaaagcaggagtacatgtgtatgagagtattggagacgtactgatccgtcgcgaacccgaacttgagagcggcggcgtgggcctggaagccgacgtctggggatcccgggagcgcggcgcacgccttgaggaggaaggggaaggtgaacttgttgggaacgacggcgccgcggagcatgagggggaagaaggcggcggcgcggaggcggacggaggggatcggggaggtggcgtgggcgcggatgagggtgttggcgaggaaggcgtcgagcgggacggaggggcggaggagggcggcgacgaggggatcgagcagcgcgggcgcggcggaggcggaggcggcgaagagccgggtgaggacgagcgggttagcgtggaggccggacttgaggaggaaggcgaccgactggaggagggacgtgggcgtcgaggaggccgcgaggaggcggaggcaatgctgctcggccgcgcgcgccgcggacggcgagaggcgcggagccggcggggaggagactggaggaggcggcatttgctcgaacac
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| CDS seq | atgccgcctcctccagtctcctccccgccggctccgcgcctctcgccgtccgcggcgcgcgcggccgagcagcattgcctccgcctcctcgcggcctcctcgacgcccacgtccctcctccagtcggtcgccttcctcctcaagtccggcctccacgctaacccgctcgtcctcacccggctcttcgccgcctccgcctccgccgcgcccgcgctgctcgatcccctcgtcgccgccctcctccgcccctccgtcccgctcgacgccttcctcgccaacaccctcatccgcgcccacgccacctccccgatcccctccgtccgcctccgcgccgccgccttcttccccctcatgctccgcggcgccgtcgttcccaacaagttcaccttccccttcctcctcaaggcgtgcgccgcgctcccgggatccccagacgtcggcttccaggcccacgccgccgctctcaagttcgggttcgcgacggatcagtacgtctccaatactctcatacacatgtactcctgctttggcggcgggttccttggcgacgcgcggaatgtgtttgatagaatgcccaaggagagtgccgttacctggagtgcgatgatcggcgggtatgtgcgTGGggggctgtcgagtgatgctgtcgagctcttcagggagatgcaggccaatgggGtacaggccgatgaggtgacagtgattggagtcctggcggcggccacagatttgggtgcacttgagctggctcgatgggtccgacgctttgtggagagagaggggatcgggaagtctgtgacgctgtgcaatgcactgatcgacacgctcgctaagtgtggagatgtggatggggcggtggctgtgtttgaggggatgcagcagcggagtgttgtttcatggacatcggtgattgatgcgcttgcgatggagggtcgtgggaaggaggctgtgcgagtgtttgaagagatgaaggttgcaggtgttccacctgatgatgttgccttcattggggtgctcacagcttgcagccatgctggtatggtggatgaaggctgtggctactttgatgccatgaaagtggagtatggcattgagcctaagattgagcactatggttgcatggttgacatgtttggtcgggctggcatggttgagcgggcgatggaattcgtccgtacaatgcctatacaaccgaacccatgtgaggttatggattctgcccgctgcatgcatgaaaatgggatcttgatctatctggagcataataaatga
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| Protein seq | MPPPPVSSPPAPRLSPSAARAAEQHCLRLLAASSTPTSLLQSVAFLLKSGLHANPLVLTRLFAASASAAPALLDPLVAALLRPSVPLDAFLANTLIRAHATSPIPSVRLRAAAFFPLMLRGAVVPNKFTFPFLLKACAALPGSPDVGFQAHAAALKFGFATDQYVSNTLIHMYSCFGGGFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVELFREMQANGVQADEVTVIGVLAAATDLGALELARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPIQPNPCEVMDSARCMHENGILIYLEHNK |
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| Function | Pentatricopeptide repeat-containing protein At1g74630 [UniProtKB/Swiss-Prot:Q9CA54] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0039930 | OsLima_03g0039930.01 | Chr03 | 37604341 | 37607097 | - | NAM | ||
| CDS seq | atgccgcctcctccagtctcctccccgccggctccgcgcctctcgccgtccgcggcgcgcgcggccgagcagcattgcctccgcctcctcgcggcctcctcgacgcccacgtccctcctccagtcggtcgccttcctcctcaagtccggcctccacgctaacccgctcgtcctcacccggctcttcgccgcctccgcctccgccgcgcccgcgctgctcgatcccctcgtcgccgccctcctccgcccctccgtcccgctcgacgccttcctcgccaacaccctcatccgcgcccacgccacctccccgatcccctccgtccgcctccgcgccgccgccttcttccccctcatgctccgcggcgccgtcgttcccaacaagttcaccttccccttcctcctcaaggcgtgcgccgcgctcccgggatccccagacgtcggcttccaggcccacgccgccgctctcaagttcgggttcgcgacggatcagtacgtctccaatactctcatacacatgtactcctgctttggcggcgggttccttggcgacgcgcggaatgtgtttgatagaatgcccaaggagagtgccgttacctggagtgcgatgatcggcgggtatgtgcgTGGggggctgtcgagtgatgctgtcgagctcttcagggagatgcaggccaatgggGtacaggccgatgaggtgacagtgattggagtcctggcggcggccacagatttgggtgcacttgagctggctcgatgggtccgacgctttgtggagagagaggggatcgggaagtctgtgacgctgtgcaatgcactgatcgacacgctcgctaagtgtggagatgtggatggggcggtggctgtgtttgaggggatgcagcagcggagtgttgtttcatggacatcggtgattgatgcgcttgcgatggagggtcgtgggaaggaggctgtgcgagtgtttgaagagatgaaggttgcaggtgttccacctgatgatgttgccttcattggggtgctcacagcttgcagccatgctggtatggtggatgaaggctgtggctactttgatgccatgaaagtggagtatggcattgagcctaagattgagcactatggttgcatggttgacatgtttggtcgggctggcatggttgagcgggcgatggaattcgtccgtacaatgcctatacaaccgaacccatgtgaggttatggattctgcccgctgcatgcatgaaaatgggatcttgatctatctggagcataataaatga
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| Protein seq | MPPPPVSSPPAPRLSPSAARAAEQHCLRLLAASSTPTSLLQSVAFLLKSGLHANPLVLTRLFAASASAAPALLDPLVAALLRPSVPLDAFLANTLIRAHATSPIPSVRLRAAAFFPLMLRGAVVPNKFTFPFLLKACAALPGSPDVGFQAHAAALKFGFATDQYVSNTLIHMYSCFGGGFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVELFREMQANGVQADEVTVIGVLAAATDLGALELARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPIQPNPCEVMDSARCMHENGILIYLEHNK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.064520 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0821700 | RBH | 0.806112 | 0.100836 | 0.717779 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g60690 | RBH | 0.499746 | 0.056058 | 0.200569 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0821700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0040070 | RBH | 0.000000 | 0.917083 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0039740 | RBH | 0.000000 | 0.733064 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0039810 | RBH | 0.287079 | 0.0 | 0.451327 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0040050 | RBH | 0.048612 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0039620 | RBH | 3.017726 | 0.0 | 0.746790 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0552300 | SBH | 0.9969375 | 3.4152915 | 0.7234285 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0039370 | RBH | 0.0 | 0.265625 | 0.247915 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0590800 | RBH | 0.7272705 | 1.153985 | 3.609661 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0000980 | SBH | 0.0 | 0.048199 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0039870 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0039500 | RBH | 3.506396 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0039600 | RBH | 0.0 | 0.185924 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0039660 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G039420 | RBH | 0.103689 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0039170 | RBH | 0.323958 | 0.0 | 0.0 |
