Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0039220 | OGI:03094950 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:37134828-37137909 | ||||||||
| Gene Symbol | CYP22, OsCYP22, OsCYP-10 | ||||||||||
| DNA seq | gtctcatttctctttgttatttcctgaatcatggtacacgcatgaatggcagcttatagtttagtatactttataaaatgggtgcaaccacagatcgactcatcatttcatcaagcatgttcagctgaatataatgccagctccacttgacatgacgaaggttcaagtcgaacagacacacatattccctgtttagaatattaatcaacagtttaagtgacaactgatgtcactgacgaagtgaggatgaactttcatcagtgtatagacagacactcattcaaggtgaattgatactttggtacagctatgtcttatggtgcttccaatgctggagtagtttcatccatgcaaagtctatttctacatcagcagcaccaagaatagtcaccctcaaggtacaaactacatctcaccacactcgcttatgacacatgcgagcttcggtcggttgtttggtccagttgcaacattctcgatcttccgcacagcaagcataccatcccctagcaccctctgaaatgatttaacatgacaatagagagttatttcaattagaatggtggtaggttaacatggtacgtagtaataggtaaaaacaccacctagcctgagactagcacatgactgctaagaaccattcaaacacattttttctactggggcaagccgtttttccataatctcaaaagtaaagcgaataaacttttttcttgttaccaggcatatatttactctgtaagtAaaaaaacatactgtagacaagtacatgctgttggaatgttgctccgagagcacaaagcattcaaaatgagggaacttaccccaaaaaccacatgcttgttgtccagccattcacattttgcacaagttataaagaactgcaagcataagaatagaagataatgttttcaggaatactgtaactgaaaagaaacctggaactggatattgctaattttgtatagagaacaaaatacaatcccaaaacagtaccccagcccgaagattgcaaaaccagctggataaaaaatctacagccacacagaaaaaaaatagagcagttatcaaaagaagtacctgagatccattagagttcaccccactatttgcctgaaaaaagataggacagttttttacatctagaaaataaaaccaaatatatcatctaaaataaatcaaattactgtcttgcagtgcaggaaacatgcacataaaagttctaaaaaacaaaatggatgtagaagtagctagttacaccgaaacagataaaaatatagattaataacagcataaggcggttggtcacttggtcaggcaaatgttctaaaagtaaacaatacaattgggtcagtcaccaatcacaatgacctttgatgatgcttcaatgtcttgttctaatttgatgtaaatgtaatatgacctaacctatgcaaatttcaacgttgggaagagtagattggaaatactgtgtgtaaaaacaatttgccacatttagatagttaacttcagatacctcattttacgcacgattgtgtatcaactatctgcaggtttccagagcacaagaggctctgcttacccaatgaccagaagccacacaccgaaggcattaacagatgaaaactaagaatttgtaacagagagagagagagagagcaaggagtccaaggaaattatctgcaaacatagctaaaccaccaaacactagaaatagttgtcctgcacaagattacattagagaggtaatAttttctaacagtatttcaattgaaaatcaggtggagaggaataataccatagaaagtaggccaggaccagtatgctttgcaatgaagttttcatcatcaaatttggtaccatagattgacgtgcatccagtaccatcccccttaggacatcaaaacagagtgctttaatttatttttaatatcacatgaatcaaatccaagtatggagatagctgaataacagttcattgcccaatgcttgataaaagataacatcaaagtgtgcaatagtagatgccttttgttataaatccacaggattagttagttagtcctatgaaaacaccagattaaagctattatgctaggtgacatgattgacacttgaagcaaatttagcacacgaaccttcatatagtcacctccctgaatcatgaaatctttgatcactcgatggaactgacaacccttatatccctgtggtaaacctgatttcctgcaatccagtgatgaagcttctatgattgaacaatggatgtgatagtaattcaatatgtgggtgaaagcttgcgcacttttgcctaaatcacataatcaagtaatcaatgttctgAaaaaaaatgcaagctcagtttcctgccaattacaacaatcgcagacaatggaggtataatagatgtcaaattagaatggaatttagttgtgcccaaaagctactcgaccagtatcagcaatactaacctagctacccaccatcttcatcgaagatccactactacagtataaagcaattctatggcaatatcatagtcaaacaaagctaaacatttaaagctgtcaagacagtcaatgctgaagaataaacaacaaatgcttggccatagccatcaaccaatcgccgggcctccctacctgtgctctccggtgcagaactgcctgaaaccaaacaaacagatgaaacaaatcagtgagatccatcaaaagcaaacacatcagaagcaggattaaacagatggaacctagggtttaaagcgagcgagggctctgggtcagtaccggaagttctccgccgtcttggggacgatgtcggcgaagagctccatcttgatgcggccggcggggatggacccgatggtcacgtcgaagaacaccaccgggttcttcgggttcggcggccgcaggtgccagtccaccgacgacgccgccgccgccgacggcggcgtgggccccgccgagatcgccgctccccccgaggacgccatgcccgtgctcgaactctccaagcttcgcacgcggcggaggaggcggcgacggcggcggcgcgcggtcgagaggcgggaGgaagaagatgc
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| CDS seq | atggcgtcctcggggggagcggcgatctcggcggggcccacgccgccgtcggcggcggcggcgtcgtcggtggactggcacctgcggccgccgaacccgaagaacccggtggtgttcttcgacgtgaccatcgggtccatccccgccggccgcatcaagatggagctcttcgccgacatcgtccccaagacggcggagaacttccggcagttctgcaccggagagcacaggaaatcaggtttaccacagggatataagggttgtcagttccatcgagtgatcaaagatttcatgattcagggaggtgactatatgaagggggatggtactggatgcacgtcaatctatggtaccaaatttgatgatgaaaacttcattgcaaagcatactggtcctggcctactttctatggcaaatagtggggtgaactctaatggatctcagttctttataacttgtgcaaaatgtgaatggctggacaacaagcatgtggtttttgggagggtgctaggggatggtatgcttgctgtgcggaagatcgagaatgttgcaactggaccaaacaaccgaccgaagctcgcatgtgtcataagcgagtgtggtgagatgtag
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| Protein seq | MASSGGAAISAGPTPPSAAAASSVDWHLRPPNPKNPVVFFDVTIGSIPAGRIKMELFADIVPKTAENFRQFCTGEHRKSGLPQGYKGCQFHRVIKDFMIQGGDYMKGDGTGCTSIYGTKFDDENFIAKHTGPGLLSMANSGVNSNGSQFFITCAKCEWLDNKHVVFGRVLGDGMLAVRKIENVATGPNNRPKLACVISECGEM |
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| Function | Peptidyl-prolyl cis-trans isomerase CYP22 [UniProtKB/Swiss-Prot:Q9ZVJ4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0039220 | OsLima_03g0039220.01 | Chr03 | 37134828 | 37137909 | - | NAM | ||
| CDS seq | atggcgtcctcggggggagcggcgatctcggcggggcccacgccgccgtcggcggcggcggcgtcgtcggtggactggcacctgcggccgccgaacccgaagaacccggtggtgttcttcgacgtgaccatcgggtccatccccgccggccgcatcaagatggagctcttcgccgacatcgtccccaagacggcggagaacttccggcagttctgcaccggagagcacaggaaatcaggtttaccacagggatataagggttgtcagttccatcgagtgatcaaagatttcatgattcagggaggtgactatatgaagggggatggtactggatgcacgtcaatctatggtaccaaatttgatgatgaaaacttcattgcaaagcatactggtcctggcctactttctatggcaaatagtggggtgaactctaatggatctcagttctttataacttgtgcaaaatgtgaatggctggacaacaagcatgtggtttttgggagggtgctaggggatggtatgcttgctgtgcggaagatcgagaatgttgcaactggaccaaacaaccgaccgaagctcgcatgtgtcataagcgagtgtggtgagatgtag
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| Protein seq | MASSGGAAISAGPTPPSAAAASSVDWHLRPPNPKNPVVFFDVTIGSIPAGRIKMELFADIVPKTAENFRQFCTGEHRKSGLPQGYKGCQFHRVIKDFMIQGGDYMKGDGTGCTSIYGTKFDDENFIAKHTGPGLLSMANSGVNSNGSQFFITCAKCEWLDNKHVVFGRVLGDGMLAVRKIENVATGPNNRPKLACVISECGEM
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0039220 | OsLima_03g0039220.02 | Chr03 | 37135018 | 37135344 | - | IsoSeq | ||
| CDS seq | gagggtgctaggggatggtatgcttgctgtgcggaagatcgagaatgttgcaactggaccaaacaaccgaccgaagctcgcatgtgtcataagcgagtg |
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| Protein seq | EGARGWYACCAEDRECCNWTKQPTEARMCHKRV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.888313 | 0.636689 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0811600 | RBH | 2.225133 | 1.486950 | 6.212669 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g59700 | RBH | 1.406071 | 0.931820 | 1.475301 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0811600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0039320 | RBH | 2.613999 | 6.991475 | 7.238184 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0038990 | RBH | 1.074590 | 4.771100 | 2.989307 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0039050 | RBH | 2.612101 | 15.421165 | 4.750474 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0039340 | RBH | 0.063109 | 0.359526 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0038890 | RBH | 20.381601 | 34.178333 | 20.828329 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0579500 | RBH | 14.7185815 | 22.7817935 | 47.3208085 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0038660 | RBH | 0.843067 | 2.083209 | 2.678798 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0582000 | RBH | 15.9533155 | 19.573121 | 42.2269765 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0039180 | RBH | 0.572877 | 20.241827 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0038830 | RBH | 13.345996 | 22.464083 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0038860 | RBH | 1.078833 | 2.018248 | 1.863816 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0038920 | RBH | 0.850928 | 8.520282 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G038700 | RBH | 0.755974 | 7.937085 | 3.666286 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0038450 | RBH | 1.799694 | 23.057516 | 15.911292 |
