Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0038460 | OGI:03093630 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:36627586-36629252 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctcaactccacctcgtcgcctccgccgcttggAGAagaagaagaagaagaagaagaagatctctctcgcctcggagagaggaggaggaggagatccggcggcgatggagctgttcgcgagggcgcaggtggtgAggctgaagagccaccacgacaagttcctctacgccgacgaggacgaggtgcacgtcacgcaggacaggaacggcgccgccacgaacgcgcggtggacggtggagcgggtgccgcactcacccggcgtcgtgcgcctccgcagccgatacggccgctacctctccgcctccaacgagcccttcctgctcgggatgacgggccgcaaggtgctgcaggcgccgccgcccggcggccgcgccaccgactcgtcgctggagtgggagcccgtcaaggacggcttccaggcgaagctcaagacgcggtacggccactacctccgcgccaacggcggcctcccgccgtggcggaactcggtcacgcacgacgtgccgcaccgcaccgccacgcaggactgggtgctctgggacgtcgagatcgtgcaggtgctcacccccggccacgaccgcgcccccacctccgccgcgccgccgtcgccggcccacgcgctcgagcttaagaagccgccgccgccgccggaggcgcaccaccggCccaccaagtcctacaccgggcacccgccgccgccgccgctggagaaagacgcgccgccgcagccgccgcgaccgcaggaggtccaccaccggcccaccaaatcgtacaccgggaacccgccgcagccgctggagaaagacgcgtcgccgcagcctccaccgccgaagcccgcgtcctctagactcgaggtttgtcatttgttcgaacatttcccttgctctccattgaattgaccagtgcatgttcgtcgaattggtctccatctcatcctgagatcattgacttcagatttggagcaaagaaagccatcattgacttcagatttggagcaccctttaattgcgtaggctaatgtgtcgtcctttggatgaactaaccaatcatttcataaagctgcttctagaatcaacaaatagagatgctcaaatgcaattagcaatcatttggaacttttaatcattatgtgtgccaagaaatttggaactattatagttgatttctccaatttcccaattacttctgaaacttttgcaatgattcaggaaattaacactgagacttccttgtgctgtcagtcctccctttctttctctgcgccattgcacaaggtggagggccgtgcaatctactaccacattgcagatgataaGggcgatgtggacgaagacgacgagacacgctcattcacattcaatggctccaacttggaggagctcacacacaagttgcaggaagagacgggcctccatgacataatcatctgcacacgcagccctatcactggcaagctcgCTcctctccgcttgcagctgccaccaaacaatgcagcaatgcatattgtgcttgtccaggagtcctcaaaaggtgaattttgtcattccttgttgttttcaccatcctaactactcctgcttctattggatgctattgtaaaagcaaaagaaactaaattttatttaggctaatgatatgccctgaatctgtctgattagtctaagatta
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| CDS seq | atggagctgttcgcgagggcgcaggtggtgAggctgaagagccaccacgacaagttcctctacgccgacgaggacgaggtgcacgtcacgcaggacaggaacggcgccgccacgaacgcgcggtggacggtggagcgggtgccgcactcacccggcgtcgtgcgcctccgcagccgatacggccgctacctctccgcctccaacgagcccttcctgctcgggatgacgggccgcaaggtgctgcaggcgccgccgcccggcggccgcgccaccgactcgtcgctggagtgggagcccgtcaaggacggcttccaggcgaagctcaagacgcggtacggccactacctccgcgccaacggcggcctcccgccgtggcggaactcggtcacgcacgacgtgccgcaccgcaccgccacgcaggactgggtgctctgggacgtcgagatcgtgcaggtgctcacccccggccacgaccgcgcccccacctccgccgcgccgccgtcgccggcccacgcgctcgagcttaagaagccgccgccgccgccggaggcgcaccaccggCccaccaagtcctacaccgggcacccgccgccgccgccgctggagaaagacgcgccgccgcagccgccgcgaccgcaggaggtccaccaccggcccaccaaatcgtacaccgggaacccgccgcagccgctggagaaagacgcgtcgccgcagcctccaccgccgaagcccgcgtcctctagactcgagtcctccctttctttctctgcgccattgcacaaggtggagggccgtgcaatctactaccacattgcagatgataaGggcgatgtggacgaagacgacgagacacgctcattcacattcaatggctccaacttggaggagctcacacacaagttgcaggaagagacgggcctccatgacataatcatctgcacacgcagccctatcactggcaagctcgCTcctctccgcttgcagctgccaccaaacaatgcagcaatgcatattgtgcttgtccaggagtcctcaaaaggtgaattttgtcattccttgttgttttcaccatcc
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| Protein seq | MELFARAQVVRLKSHHDKFLYADEDEVHVTQDRNGAATNARWTVERVPHSPGVVRLRSRYGRYLSASNEPFLLGMTGRKVLQAPPPGGRATDSSLEWEPVKDGFQAKLKTRYGHYLRANGGLPPWRNSVTHDVPHRTATQDWVLWDVEIVQVLTPGHDRAPTSAAPPSPAHALELKKPPPPPEAHHRPTKSYTGHPPPPPLEKDAPPQPPRPQEVHHRPTKSYTGNPPQPLEKDASPQPPPPKPASSRLESSLSFSAPLHKVEGRAIYYHIADDKGDVDEDDETRSFTFNGSNLEELTHKLQEETGLHDIIICTRSPITGKLAPLRLQLPPNNAAMHIVLVQESSKGEFCHSLLFSPS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0038460 | OsLima_03g0038460.01 | Chr03 | 36627586 | 36629252 | + | NAM | ||
| CDS seq | atggagctgttcgcgagggcgcaggtggtgAggctgaagagccaccacgacaagttcctctacgccgacgaggacgaggtgcacgtcacgcaggacaggaacggcgccgccacgaacgcgcggtggacggtggagcgggtgccgcactcacccggcgtcgtgcgcctccgcagccgatacggccgctacctctccgcctccaacgagcccttcctgctcgggatgacgggccgcaaggtgctgcaggcgccgccgcccggcggccgcgccaccgactcgtcgctggagtgggagcccgtcaaggacggcttccaggcgaagctcaagacgcggtacggccactacctccgcgccaacggcggcctcccgccgtggcggaactcggtcacgcacgacgtgccgcaccgcaccgccacgcaggactgggtgctctgggacgtcgagatcgtgcaggtgctcacccccggccacgaccgcgcccccacctccgccgcgccgccgtcgccggcccacgcgctcgagcttaagaagccgccgccgccgccggaggcgcaccaccggCccaccaagtcctacaccgggcacccgccgccgccgccgctggagaaagacgcgccgccgcagccgccgcgaccgcaggaggtccaccaccggcccaccaaatcgtacaccgggaacccgccgcagccgctggagaaagacgcgtcgccgcagcctccaccgccgaagcccgcgtcctctagactcgagtcctccctttctttctctgcgccattgcacaaggtggagggccgtgcaatctactaccacattgcagatgataaGggcgatgtggacgaagacgacgagacacgctcattcacattcaatggctccaacttggaggagctcacacacaagttgcaggaagagacgggcctccatgacataatcatctgcacacgcagccctatcactggcaagctcgCTcctctccgcttgcagctgccaccaaacaatgcagcaatgcatattgtgcttgtccaggagtcctcaaaaggtgaattttgtcattccttgttgttttcaccatcc
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| Protein seq | MELFARAQVVRLKSHHDKFLYADEDEVHVTQDRNGAATNARWTVERVPHSPGVVRLRSRYGRYLSASNEPFLLGMTGRKVLQAPPPGGRATDSSLEWEPVKDGFQAKLKTRYGHYLRANGGLPPWRNSVTHDVPHRTATQDWVLWDVEIVQVLTPGHDRAPTSAAPPSPAHALELKKPPPPPEAHHRPTKSYTGHPPPPPLEKDAPPQPPRPQEVHHRPTKSYTGNPPQPLEKDASPQPPPPKPASSRLESSLSFSAPLHKVEGRAIYYHIADDKGDVDEDDETRSFTFNGSNLEELTHKLQEETGLHDIIICTRSPITGKLAPLRLQLPPNNAAMHIVLVQESSKGEFCHSLLFSPS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.064722 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0801900 | RBH | 0.538579 | 0.428451 | 1.225617 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g58740 | RBH | 0.271533 | 0.214838 | 0.235213 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0801900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0038540 | RBH | 0.0 | 6.418128 | 2.335876 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0038220 | RBH | 0.0 | 0.548119 | 0.486753 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0038280 | RBH | 0.535918 | 1.136324 | 1.517456 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0038570 | RBH | 0.036348 | 0.120258 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0038110 | RBH | 1.632974 | 0.000000 | 5.198244 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0571500 | RBH | 2.2272155 | 17.186671 | 4.086975 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0037880 | RBH | 0.0 | 0.241560 | 0.390088 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0573500 | RBH | 2.7907425 | 15.5939105 | 4.9305905 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0005800 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0038450 | RBH | 0.173489 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0038050 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0038110 | RBH | 0.0 | 0.0 | 1.070848 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0038140 | RBH | 0.062509 | 1.083337 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G037910 | RBH | 0.066907 | 2.067999 | 1.215217 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0037690 | RBH | 0.000000 | 4.580329 | 0.0 |
