Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0038060 | OGI:03093010 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:36370420-36374837 | ||||||||
| Gene Symbol | REB, OsZIP33, RISBZ2, OsbZIP33 | ||||||||||
| DNA seq | agacaagaggaagcatcgatcaaaatattattgaatgatagcatagcagctgcctgaaatcagtcgttcaaattagggacgacgccatcacaccaatgaacatttggctaatgtgtatagtatttaggacgatgagatccacaaGgggtactaagtcccttagaagaagagggtactaagaggtgtcccttacaaagaatgcacaatgacgacgacgacgaccaacaatcatcaacctcacagcattagcaatgtctacgcctgtccaatcatcatttcctgctcgcagtgtctttcagaaccgaagcagctctgggtttcggtctcaggacgtcgacccagacgaagccggcccaccgcacatcctcttctggagatgctccaggctcgccacccgctgcagcgaggctggccggccaatcttgccggcagccagagcgccattgacgaagtcctcgtcctcctgagccgaagaaggtatgtcgggcatgtagttgttgttacctccgatgtcgttgttagtagcgaagtaattgttcgggtcatcttggatgggaacagcagcgtctgacgttgcttcagatggggagctgttgaatggcatgctgagggatgacatatcagaagcggcgggaaacaacgcgttcatgcctgtcacccgcttcaccgagtcctctgccatcttcacctgcgaatttttgatacatttcaatgttcagattgacctgatttaataatcatgtttggactggccaaatggtgatttatagagtataatggtagcgtggattattcttctaataacagggtacacaagtcagttgaaagtttgaaacaagccaaagtagccaatccatgggatgcatattgcaaaaggcatatatagcatacctttgctctcaaggtctcaacatctgcttttagcactctattgtcaacagcagcatcattgtacttctggttaacatcagcaagacgccttaacagcgaggagttctcgactcttaattgcgatacctgtaacaagtaaatccataactgaagtcagtagccagtaatttaggattttatgtcttatcgaaaataactatgtgaactatcacacctgtgcctccagctcattcaagtgagctgcctttctgcttcttgagcgcctggctgactcccgattggattgcttcctggaacaggtcaacaaaactagcattatatcgagaagtgcttgctcaacatcttcatacaaaatcacccaaaagaacagcctatattattgtctagcacaagtaacataataaacaatacaaggtataatgcaatccaccatatcatcacgtgacgtttgaatattttgattttagtgagcaaatgtggggtgtacacactgtccatatcataactcaccataccttgtatgctgcacatacatgtaccctaccgtgacattattttacagccaactgagactaataccaaacttaaattgagaaaatagctgccaaatgaattctggtaatcatagtcaatagctatcaaatccgtggtttattggggtaattgctttatgaaaggtaaagctctctagggagtataactttgatttgcaaatccaagatgggggtgcatcaaccagatactagatacaatcggtttcagaaacttgtgacataaggaatatgatgtgaactcagatttaattcatcccaaattgcttatgtcaataaacaagtagagagcaaagtgctacgtgtaatagccatacaaattcctctcttgctcgagacactaagcactgagtatggcacacagagaactaatatggtaggtaaaagatcataaatgcgatgcaataggaaactgaaaggctaccggatgaaagtggaaatccaactgaaagggctaaggtgaaaataggacacatgcatgcatgacgaggtaggttaattatgtacagaatctatattacaaggaagcaatgaatgatcaccttcgttgtaatctttgatcagcaggtcttgcagttccagtggtctcagcttctccctccatgtcatcatcatctgactgctcccttgatgaagagctggtgggctgctttacaaggacatcaacattctgtaccaactgtgagcccgatcccccacttgggccacttagcatgttttgaactggagtagcattgCctgatatgtgcccatgttccaaacagagcatagtaaagccaggcatgaaatatcagaagtcaaaagtagcattcctgttttgtcgacatttcactacaggaCaaatcatgataacaacagctatttaagtactactcaattctaaagctaagtgcccatctttgcaagatcctaaggattcaaggtgcattaatcaaaatatgttttcttgtgagcactcagaacaggaagttctccattcatggtcaaggcaacaacaaatgctcctgccagctggcagtcagcaatgaaatgatttaagggaactccaaacaaacataaccctatctacttaagcataacaattctaatgttcaaagaatcactaacaaatgcggaacttatttattcatagcttcagaactatttgatgacgtgacagcaatacaactctacttctatttcaaagaaactaaaatttaatcccatgcaattgtgcaggatatttgggtagtttcataacaatctgaaaatgtaaccagataagataagtacctccgatggaattaggagcgcctatgtgtgaaacatctgcattcagcaaggatgaaccagctccaggacgctcaggtggaactgtgccagaggcctgaagatgaaaatgacatgagctagcatgataaaatgaacagaactacataaatgattataggataaaccaatcagtgcatgttgctctagttgtccattttaagtccaatgtaacaaaaaattgaattgcaaataataaattataggcacaaaacgaggcatagccacacattgcaacaacataagctGggaaaaaactgaaggcaaccaacaaataggctaatttcagcaaatgaaggccagtgatcatcaaattctggagcacataaataggctatttttcgtttcttagaaaatcgatgacgacatagaaaagacaaattaagctgacatcacccaactaagcacaagcacctagaaatggctgtgacagcttatacgcatgccagggcggattcaacgtgggtgcaggggggactcaagtcccccctgcacccatcggacccatggatacccccctgagtccccccttcaattttttcaccatggttgataagataagaggtgctaaaggtctcttaatagcattttagcatagtttaatactgagatgatgtgtttatgccagtgtactcggtatgttgaatccccccaactttttgttcctggatccgcccaatcaaatacttgcataaagtcacatattgccaatctaaaaaggcaatgtacagtttaagcagccccatacaaaaatattgcaattgcaaacaaaccactgtctcgcagtttagtaagaatatgactgaTtacatcgccaattcgccaggttgcatcgatatcgcaatctcaataccgaggtctatgaagcttccgtttgtacacaaccctacatactatgagtcgaaccaACCaccgacactcaacagagcgcattgcaagaccatggacgccattggtctatagaaatgcccgatctaaatacctataaacattcgatgcaaacagtagctagcattgccgatctcagtaagctctcgagtactagaGggggggagaatggctgtaccctccacatggcgaccgcggcgaggtccttctccagcttctgcttcagcatcgcgttgtactccacggggtccaccaccgcgctcgtcgtcgccgccgccgagagctgcggctgcttaacatcgaccggcaccacccctcctgcgCccctgatccctcccgcttcggccctcgggctagggttcgggacggggctatcgagcaccgcctcctccagaaacttctggaagtaccactccgacgggcaccggttcatcgcgttcccgccgccgccgccccccgctacaccaccaccacctcccgaagccacgccgccgccgccctgctgctgggccgccgccgccgactgcggcggcggaggcgggacccagaatgggtcggagatctcctccacggagaacacccgctccatcgcggaatcggaatccgctctcgccgacgcggatcgcggggctaccctccgatggattcgcgagggggggattcgagggtttgatcggagaaaacctcgcgcgaattgccgcttggagaagaggagaggagagaggagaggattgggaaggcggctgcgtgctgctaattttttgtgtttgggtgtaaatt
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| CDS seq | atggagcgggtgttctccgtggaggagatctccgacccattctgggtcccgcctccgccgccgcagtcggcggcggcggcccagcagcagggcggcggcggcgtggcttcgggaggtggtggtggtgtagcggggggcggcggcggcgggaacgcgatgaaccggtgcccgtcggagtggtacttccagaagtttctggaggaggcggtgctcgatagccccgtcccgaaccctagcccgagggccgaagcgggagggatcagggGcgcaggaggggtggtgccggtcgatgttaagcagccgcagctctcggcggcggcgacgacgagcgcggtggtggaccccgtggagtacaacgcgatgctgaagcagaagctggagaaggacctcgccgcggtcgccatgtggagggcctctggcacagttccacctgagcgtcctggagctggttcatccttgctgaatgcagatgtttcacacataggcgctcctaattccatcggagGcaatgctactccagttcaaaacatgctaagtggcccaagtgggggatcgggctcacagttggtacagaatgttgatgtccttgtaaagcagcccaccagctcttcatcaagggagcagtcagatgatgatgacatggagggagaagctgagaccactggaactgcaagacctgctgatcaaagattacaacgaaggaagcaatccaatcgggagtcagccaggcgctcaagaagcagaaaggcagctcacttgaatgagctggaggcacaggtatcgcaattaagagtcgagaactcctcgctgttaaggcgtcttgctgatgttaaccagaagtacaatgatgctgctgttgacaatagagtgctaaaagcagatgttgagaccttgagagcaaaggtgaagatggcagaggactcggtgaagcgggtgacaggcatgaacgcgttgtttcccgccgcttctgatatgtcatccctcagcatgccattcaacagctccccatctgaagcaacgtcagacgctgctgttcccatccaagatgacccgaacaattacttcgctactaacaacgacatcggaggtaacaacaactacatgcccgacataccttcttcggctcaggaggacgaggacttcgtcaatggcgctctggctgccggcaagattggccggccagcctcgctgcagcgggtggcgagcctggagcatctccagaagaggatgtgcggtgggccggcttcgtctgggtcgacgtcctga
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| Protein seq | MERVFSVEEISDPFWVPPPPPQSAAAAQQQGGGGVASGGGGGVAGGGGGGNAMNRCPSEWYFQKFLEEAVLDSPVPNPSPRAEAGGIRGAGGVVPVDVKQPQLSAAATTSAVVDPVEYNAMLKQKLEKDLAAVAMWRASGTVPPERPGAGSSLLNADVSHIGAPNSIGGNATPVQNMLSGPSGGSGSQLVQNVDVLVKQPTSSSSREQSDDDDMEGEAETTGTARPADQRLQRRKQSNRESARRSRSRKAAHLNELEAQVSQLRVENSSLLRRLADVNQKYNDAAVDNRVLKADVETLRAKVKMAEDSVKRVTGMNALFPAASDMSSLSMPFNSSPSEATSDAAVPIQDDPNNYFATNNDIGGNNNYMPDIPSSAQEDEDFVNGALAAGKIGRPASLQRVASLEHLQKRMCGGPASSGSTS |
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| Function | bZIP transcription factor RISBZ2 [UniProtKB/Swiss-Prot:Q7X9A8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0038060 | OsLima_03g0038060.01 | Chr03 | 36370421 | 36374837 | - | NAM | ||
| CDS seq | atggagcgggtgttctccgtggaggagatctccgacccattctgggtcccgcctccgccgccgcagtcggcggcggcggcccagcagcagggcggcggcggcgtggcttcgggaggtggtggtggtgtagcggggggcggcggcggcgggaacgcgatgaaccggtgcccgtcggagtggtacttccagaagtttctggaggaggcggtgctcgatagccccgtcccgaaccctagcccgagggccgaagcgggagggatcagggGcgcaggaggggtggtgccggtcgatgttaagcagccgcagctctcggcggcggcgacgacgagcgcggtggtggaccccgtggagtacaacgcgatgctgaagcagaagctggagaaggacctcgccgcggtcgccatgtggagggcctctggcacagttccacctgagcgtcctggagctggttcatccttgctgaatgcagatgtttcacacataggcgctcctaattccatcggagGcaatgctactccagttcaaaacatgctaagtggcccaagtgggggatcgggctcacagttggtacagaatgttgatgtccttgtaaagcagcccaccagctcttcatcaagggagcagtcagatgatgatgacatggagggagaagctgagaccactggaactgcaagacctgctgatcaaagattacaacgaaggaagcaatccaatcgggagtcagccaggcgctcaagaagcagaaaggcagctcacttgaatgagctggaggcacaggtatcgcaattaagagtcgagaactcctcgctgttaaggcgtcttgctgatgttaaccagaagtacaatgatgctgctgttgacaatagagtgctaaaagcagatgttgagaccttgagagcaaaggtgaagatggcagaggactcggtgaagcgggtgacaggcatgaacgcgttgtttcccgccgcttctgatatgtcatccctcagcatgccattcaacagctccccatctgaagcaacgtcagacgctgctgttcccatccaagatgacccgaacaattacttcgctactaacaacgacatcggaggtaacaacaactacatgcccgacataccttcttcggctcaggaggacgaggacttcgtcaatggcgctctggctgccggcaagattggccggccagcctcgctgcagcgggtggcgagcctggagcatctccagaagaggatgtgcggtgggccggcttcgtctgggtcgacgtcctga
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| Protein seq | MERVFSVEEISDPFWVPPPPPQSAAAAQQQGGGGVASGGGGGVAGGGGGGNAMNRCPSEWYFQKFLEEAVLDSPVPNPSPRAEAGGIRGAGGVVPVDVKQPQLSAAATTSAVVDPVEYNAMLKQKLEKDLAAVAMWRASGTVPPERPGAGSSLLNADVSHIGAPNSIGGNATPVQNMLSGPSGGSGSQLVQNVDVLVKQPTSSSSREQSDDDDMEGEAETTGTARPADQRLQRRKQSNRESARRSRSRKAAHLNELEAQVSQLRVENSSLLRRLADVNQKYNDAAVDNRVLKADVETLRAKVKMAEDSVKRVTGMNALFPAASDMSSLSMPFNSSPSEATSDAAVPIQDDPNNYFATNNDIGGNNNYMPDIPSSAQEDEDFVNGALAAGKIGRPASLQRVASLEHLQKRMCGGPASSGSTS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0038060 | OsLima_03g0038060.02 | Chr03 | 36370420 | 36370580 | - | IsoSeq | ||
| CDS seq | agggacttagtacccCttgtggatctcatcgtcctaaatactatacacattagccaaatgttcattggtgtgatggcgtcgtcccta |
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| Protein seq | RDLVPLVDLIVLNTIHISQMFIGVMASSL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.395292 | 0.302386 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0796900 | RBH | 0.614552 | 0.432161 | 3.327955 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g58250 | RBH | 0.385731 | 0.294846 | 0.828483 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0796900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0038160 | RBH | 0.322722 | 3.861734 | 1.795605 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0037840 | RBH | 0.0 | 1.175533 | 0.898145 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0037890 | RBH | 0.443555 | 8.119714 | 4.229561 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0038190 | RBH | 0.066591 | 0.249417 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0037710 | RBH | 2.701450 | 5.810143 | 7.111470 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0566700 | RBH | 4.90461 | 26.97993 | 7.976641 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0037490 | RBH | 0.151868 | 0.617213 | 0.943593 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0568600 | RBH | 6.525034 | 33.5240325 | 11.560127 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0005050 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0038050 | RBH | 0.500102 | 5.411979 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0037660 | RBH | 2.259980 | 5.317997 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0037720 | RBH | 0.965517 | 0.584135 | 0.628745 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0037740 | RBH | 0.627713 | 3.887790 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G037530 | RBH | 0.605400 | 1.491514 | 2.154829 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0037310 | RBH | 0.919763 | 24.296144 | 3.854222 |
