Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0036760 | OGI:03090580 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:35504995-35508414 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tggactggcagtctggggatagttcccttaacacttaaaaaagatgtcgcatcaaattttcgattgaagattacaatgttcaaatgacagtttataagtaggtatgtcgaattatactctaatgtttcgtagagagcttatcttgaatgatttacaaagccatgggctaaagcaatgatgccgcaaagttccaatgacgcaagtacagttaatgtctcagacaaaaaaaaatcccatgatctgtttctctcttgtgcaaaattcgagtatatattgaaacttctcgctgctgctattattgttgagttgttgtcaaacgttgaaccggaaaagcatgacatcgccttcctgcacgatgtaatccttcccttccaacctcaactgcagtgacagaggtaacaggtgaacacatatctctagccctagaattcgttgcataataaattgcaaaattgttttaccaatcccttctcccttgcaactccaagagaacccgccgcgacaaaatcatcatatgatacctgggatatggtaaatgaccattgaaaaatcagtaaaagAatatctaaaagaatactaggaagtgagcaatatcttgatcaaatgcatctaaagagatgcagatatcgccaaatcttaactccatcgagccaattactagaaccattagttaacctttgtgattatggaacttacagtttcagctctaatgaagcctttctgaaagtcactgtgaataactcctgctgcttgaggtgcagtcatgcctaacacacagtcaaaacttttagtttatacagtaattgaaatgccacaaaagaacagcactgtgaagaagaataaaacctgcaagaatagtccaagcttttgtttcctgataaagaggggggaaattggaatcaaatggcaataccaaaaaccaggaaacgaagtagtcccttgacacaaaatttcaccttatctccagttgtgaaataagtcctcaatcccagaaggtcatatgttgcctttaccaaatttcctagtccactttcagtaacaccaagggattttagatattcgactctctcttctaatggcagttcagcaagttcagcctcaacctgatttgtgttccacacatttatttttgcttagatcaatgcgaacatattgtttaggtagtatcgatcaatgtctaagtaaacaaatgctcagatgtactcatgtagatgcgtattacaaacctgagctgatattgtaaccatgccagattccaagtctgttgctagtttggctacctctttgacatgagggttgttaccaggttcagcaagatcagattcagttacgttggcaacataaatgacaggtttcatagttagtagacaaagatgttggatagcttctttctcatggtcagccaaatcaacagatctagcaggttttccatccataagtacagtctgaattttttccaatccagtcctctctgcttgttcctgagtagtgagaactgttgggatctataataaccatcaaaataaggagaagagcctgaaaaccttaccttgacctttacttgctggtctttagttttgctctttttaagcttatccagtcttttctctatctgcatctcgaacacaattgtcagcgttaatggcaaaaaagaaagcacataattaaatccatacatgtttttttttcaccccacaaagcaagcaaggagataacataatgcagttacaaaattacctggtcaagatcagaaaatataagctccagattaattacatcaatatctgatttgggatcaactttcccactcacatgaacaatatcatcatcttcaaaacatcgcacaacctgaaaaggccttaaaactcaacgattaaaacccccaaaggccccaaaggcaaaacataagacagcacaagaaagttaaaataccgataatgaattgcagtgccaagaaaaacaaagtgacactcattatgtgttcaaattttgtatagaagcttaattggtactttacgaacattgaaaaaacatctaccagagaataatataaagttatccttagcaatatgaaaaatacaacagaataatatgtagtacttgatgaacaatggaatgaggcatgcgaaaaatgcatggttaaagtctccagaacttgacaaatatctgatggcaaaagatttataaaaacgacaagaaactgacctgaaggatggaatcaacctcacggatgttcgaaagAaattggtttcctagtccctgatgtatcacggttatataaactagtcagaactcagaaacaacatcagccagaacagcacattgacatcctaacataaagcgaagtcattaatgaaacacctctcctttgcttgctcctttGAcgagacctgcaatatccacaagctctatggatgttgggattgtctccttagacttgcttaattttgagagcacatgcaagcgagcatctgggatagccacaacaccaacgttggggtttatggtgcagaagggaaagtttgcagcttgtgccttcccattttcaacctgacaacgttgacaaaagaattcatgttacaacgtaatcaacaatagcatgcacattattgcgaggaatggcatgtcccgtgcaatacggcagttgcattttcatgcgttaaagattcactatacttcccatcaaacaatcatcacgactgcaaaagcactcctgcagctagggaaatgaaaattcagtgcaaaaaatctgtgacgagtcctatctaagttaagcatcataagttcataactagtcaaacgttggagagctgcatctctgtgtggcaaagaatcaaacagttgatgcgcagttccattgacgccgcatacccacttcatcctcgaccaaaaccaatccatgaatcgagaagaactcctcaaaagcacaaataatcaagatcgccttctttctcctcgagttgcttccagctaaaaacgagttcataacagcacggaattcttcggaagaagcagagggaaggttccttacaatggcattgaagagtgtggacttgccgacgttgggcaggccgacgatgccggcgcggaggctcatgctaatccgcgcgttgcggccggacgcgaaccgccgggcgcctacacccgcgctccggcgccaccgcaggagacgcgccggggacgcgcacgaggaaggcaaggtggccgtcggagtcatagctggtgtccgcgtgaatcccgcgaacgcagagccgagtgcgcggcgagacatcgtcgccatagacacgtacgcccgcgcggcggcagcggcggaggcggcggcgcggagcggaaggcgggcggctgtacggttgtcagagagacgacgaggcgggcggaggtgagagatagagtagatgagatggcacgtgagccgctcgt
More
|
||||||||||
| CDS seq | atggcgacgatgtctcgccgcgcactcggctctgcgttcgcgggattcacgcggacaccagctatgactccgacggccaccttgccttcctcgtgcgcgtccccggcgcgtctcctgcggtggcgccggagcgcgggtgtaggcgcccggcggttcgcgtccggccgcaacgcgcggattagcatgagcctccgcgccggcatcgtcggcctgcccaacgtcggcaagtccacactcttcaatgccattgttgaaaatgggaaggcacaagctgcaaactttcccttctgcaccataaaccccaacgttggtgttgtggctatcccagatgctcgcttgcatgtgctctcaaaattaagcaagtctaaggagacaatcccaacatccatagagcttgtggatattgcaggtctcgTCaaaggagcaagcaaaggagagggactaggaaaccaattTctttcgaacatccgtgaggttgattccatccttcaggttgtgcgatgttttgaagatgatgatattgttcatgtgagtgggaaagttgatcccaaatcagatattgatgtaattaatctggagcttatattttctgatcttgaccagatagagaaaagactggataagcttaaaaagagcaaaactaaagaccagcaagtaaaggtcaaggaacaagcagagaggactggattggaaaaaattcagactgtacttatggatggaaaacctgctagatctgttgatttggctgaccatgagaaagaagctatccaacatctttgtctactaactatgaaacctgtcatttatgttgccaacgtaactgaatctgatcttgctgaacctggtaacaaccctcatgtcaaagaggtagccaaactagcaacagacttggaatctggcatggttacaatatcagctcaggttgaggctgaacttgctgaactgccattagaagagagagtcgaatatctaaaatcccttggtgttactgaaagtggactaggaaatttggtaaaggcaacatatgaccttctgggattgaggacttatttcacaactggagataaggaaacaaaagcttggactattcttgcaggcatgactgcacctcaagcagcaggagttattcacagtgactttcagaaaggcttcattagagctgaaactgtatcatatgatgattttgtcgcggcgggttctcttggagttgcaagggagaagggattgttgaggttggaagggaaggattacatcgtgcaggaaggcgatgtcatgcttttccggttcaacgtttga
More
|
||||||||||
| Protein seq | MATMSRRALGSAFAGFTRTPAMTPTATLPSSCASPARLLRWRRSAGVGARRFASGRNARISMSLRAGIVGLPNVGKSTLFNAIVENGKAQAANFPFCTINPNVGVVAIPDARLHVLSKLSKSKETIPTSIELVDIAGLVKGASKGEGLGNQFLSNIREVDSILQVVRCFEDDDIVHVSGKVDPKSDIDVINLELIFSDLDQIEKRLDKLKKSKTKDQQVKVKEQAERTGLEKIQTVLMDGKPARSVDLADHEKEAIQHLCLLTMKPVIYVANVTESDLAEPGNNPHVKEVAKLATDLESGMVTISAQVEAELAELPLEERVEYLKSLGVTESGLGNLVKATYDLLGLRTYFTTGDKETKAWTILAGMTAPQAAGVIHSDFQKGFIRAETVSYDDFVAAGSLGVAREKGLLRLEGKDYIVQEGDVMLFRFNV |
||||||||||
| Function | Ribosome-binding ATPase YchF [UniProtKB/Swiss-Prot:P37518] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0036760 | OsLima_03g0036760.01 | Chr03 | 35504995 | 35508414 | - | NAM | ||
| CDS seq | atggcgacgatgtctcgccgcgcactcggctctgcgttcgcgggattcacgcggacaccagctatgactccgacggccaccttgccttcctcgtgcgcgtccccggcgcgtctcctgcggtggcgccggagcgcgggtgtaggcgcccggcggttcgcgtccggccgcaacgcgcggattagcatgagcctccgcgccggcatcgtcggcctgcccaacgtcggcaagtccacactcttcaatgccattgttgaaaatgggaaggcacaagctgcaaactttcccttctgcaccataaaccccaacgttggtgttgtggctatcccagatgctcgcttgcatgtgctctcaaaattaagcaagtctaaggagacaatcccaacatccatagagcttgtggatattgcaggtctcgTCaaaggagcaagcaaaggagagggactaggaaaccaattTctttcgaacatccgtgaggttgattccatccttcaggttgtgcgatgttttgaagatgatgatattgttcatgtgagtgggaaagttgatcccaaatcagatattgatgtaattaatctggagcttatattttctgatcttgaccagatagagaaaagactggataagcttaaaaagagcaaaactaaagaccagcaagtaaaggtcaaggaacaagcagagaggactggattggaaaaaattcagactgtacttatggatggaaaacctgctagatctgttgatttggctgaccatgagaaagaagctatccaacatctttgtctactaactatgaaacctgtcatttatgttgccaacgtaactgaatctgatcttgctgaacctggtaacaaccctcatgtcaaagaggtagccaaactagcaacagacttggaatctggcatggttacaatatcagctcaggttgaggctgaacttgctgaactgccattagaagagagagtcgaatatctaaaatcccttggtgttactgaaagtggactaggaaatttggtaaaggcaacatatgaccttctgggattgaggacttatttcacaactggagataaggaaacaaaagcttggactattcttgcaggcatgactgcacctcaagcagcaggagttattcacagtgactttcagaaaggcttcattagagctgaaactgtatcatatgatgattttgtcgcggcgggttctcttggagttgcaagggagaagggattggtaaaacaattttgcaatttattatgcaacgaattctag
More
|
|||||||
| Protein seq | MATMSRRALGSAFAGFTRTPAMTPTATLPSSCASPARLLRWRRSAGVGARRFASGRNARISMSLRAGIVGLPNVGKSTLFNAIVENGKAQAANFPFCTINPNVGVVAIPDARLHVLSKLSKSKETIPTSIELVDIAGLVKGASKGEGLGNQFLSNIREVDSILQVVRCFEDDDIVHVSGKVDPKSDIDVINLELIFSDLDQIEKRLDKLKKSKTKDQQVKVKEQAERTGLEKIQTVLMDGKPARSVDLADHEKEAIQHLCLLTMKPVIYVANVTESDLAEPGNNPHVKEVAKLATDLESGMVTISAQVEAELAELPLEERVEYLKSLGVTESGLGNLVKATYDLLGLRTYFTTGDKETKAWTILAGMTAPQAAGVIHSDFQKGFIRAETVSYDDFVAAGSLGVAREKGLVKQFCNLLCNEF
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0036760 | OsLima_03g0036760.02 | Chr03 | 35504995 | 35508414 | - | NAM | ||
| CDS seq | atggcgacgatgtctcgccgcgcactcggctctgcgttcgcgggattcacgcggacaccagctatgactccgacggccaccttgccttcctcgtgcgcgtccccggcgcgtctcctgcggtggcgccggagcgcgggtgtaggcgcccggcggttcgcgtccggccgcaacgcgcggattagcatgagcctccgcgccggcatcgtcggcctgcccaacgtcggcaagtccacactcttcaatgccattgttgaaaatgggaaggcacaagctgcaaactttcccttctgcaccataaaccccaacgttggtgttgtggctatcccagatgctcgcttgcatgtgctctcaaaattaagcaagtctaaggagacaatcccaacatccatagagcttgtggatattgcaggtctcgTCaaaggagcaagcaaaggagagggactaggaaaccaattTctttcgaacatccgtgaggttgattccatccttcaggttgtgcgatgttttgaagatgatgatattgttcatgtgagtgggaaagttgatcccaaatcagatattgatgtaattaatctggagcttatattttctgatcttgaccagatagagaaaagactggataagcttaaaaagagcaaaactaaagaccagcaagtaaaggtcaaggaacaagcagagaggactggattggaaaaaattcagactgtacttatggatggaaaacctgctagatctgttgatttggctgaccatgagaaagaagctatccaacatctttgtctactaactatgaaacctgtcatttatgttgccaacgtaactgaatctgatcttgctgaacctggtaacaaccctcatgtcaaagaggtagccaaactagcaacagacttggaatctggcatggttacaatatcagctcaggttgaggctgaacttgctgaactgccattagaagagagagtcgaatatctaaaatcccttggtgttactgaaagtggactaggaaatttggtaaaggcaacatatgaccttctgggattgaggacttatttcacaactggagataaggaaacaaaagcttggactattcttgcaggcatgactgcacctcaagcagcaggagttattcacagtgactttcagaaaggcttcattagagctgaaactgtatcatatgatgattttgtcgcggcgggttctcttggagttgcaagggagaagggattgttgaggttggaagggaaggattacatcgtgcaggaaggcgatgtcatgcttttccggttcaacgtttga
More
|
|||||||
| Protein seq | MATMSRRALGSAFAGFTRTPAMTPTATLPSSCASPARLLRWRRSAGVGARRFASGRNARISMSLRAGIVGLPNVGKSTLFNAIVENGKAQAANFPFCTINPNVGVVAIPDARLHVLSKLSKSKETIPTSIELVDIAGLVKGASKGEGLGNQFLSNIREVDSILQVVRCFEDDDIVHVSGKVDPKSDIDVINLELIFSDLDQIEKRLDKLKKSKTKDQQVKVKEQAERTGLEKIQTVLMDGKPARSVDLADHEKEAIQHLCLLTMKPVIYVANVTESDLAEPGNNPHVKEVAKLATDLESGMVTISAQVEAELAELPLEERVEYLKSLGVTESGLGNLVKATYDLLGLRTYFTTGDKETKAWTILAGMTAPQAAGVIHSDFQKGFIRAETVSYDDFVAAGSLGVAREKGLLRLEGKDYIVQEGDVMLFRFNV
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr03 | 35504995 | 35505515 | - | OsLima_03g0036760.01 | OsLima_03g0036760.02,OsLima_03g0036760.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.121729 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0781000 | RBH | 3.593165 | 2.929820 | 1.343846 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g56840 | RBH | 2.338797 | 2.029473 | 0.446592 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0781000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0036940 | RBH | 0.524263 | 3.096330 | 3.451586 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0036630 | RBH | 0.408568 | 0.000000 | 1.093899 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0036690 | RBH | 1.998444 | 1.219619 | 6.482524 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0036980 | RBH | 0.240674 | 0.189211 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0036470 | RBH | 8.715240 | 1.307294 | 13.546217 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0552200 | RBH | 27.6748485 | 5.136621 | 2.1702405 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0036270 | RBH | 1.241819 | 0.351354 | 1.182124 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0553000 | SBH | 15.622432 | 3.4403705 | 11.7132265 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0036770 | RBH | 0.197373 | 1.652648 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0036410 | RBH | 1.347673 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0036500 | RBH | 2.808939 | 0.130595 | 1.323544 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0036460 | RBH | 0.957017 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G036270 | RBH | 0.324039 | 3.055779 | 0.578760 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0036060 | RBH | 1.493635 | 0.000000 | 4.517187 |
