Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0034890 | OGI:03087230 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:34089240-34095910 | ||||||||
| Gene Symbol | PAP2, MADS34, OsMADS34, RMADS212/RMADS217/RMADS221, OsPAP2/MADS34, MADS34/PAP2, PAP2/OsMADS34, OsMADS34/PAP2, OsMADS19 | ||||||||||
| DNA seq | aaacgcaaaaaggatggttgtcccgcttttgttttcacggtaccatatcacgcaccttactcgcagtgacagtactcacaaactgttcatacaagacaaaactatacatagtagtagtacattacactgagaaaagtttggcaagcacttaattagcaacaaattgaagaggaaggagagaggaacttctgaagcaacatatagaatccatacatatggccaaactcagctgatacttgaccctgattaactgaagctgaaacggtagctagctagctagctaggccatccactcaggaggataaccgcccggtggcggcgccggcggctggttcacgtccacggcatgaagcctgcaaaaattagcaagtgcatatttgccatcagtccaacatgattcatatatagacaaccatcactttgccattattaggacaaatcttgataatccgtggAaaactAacttgtttggtgcaaaagcggaattaatgatttttttccccttctaaatgaaagctccatttgtcaaaaagagtgtagaaatctccctttttctaacaaaagTttagcaaggatgaagacagtgcagTtcacgcacccgagggcctggaagaagtgctctggttggggaggctcactggaaaacacgccgccgccgccgccatggccattgctgcagtttccgttccatggaggctgtgggggagctgcctctacgtcgatctcgtcaagctgaaacaggaaaggatcaaacaaccaaattaaccaagagaagagcaacgttgtcactgccgatcactacagagaatgatcatgatcaagAaacatgtgcgttctccaaatagcatgatgtcaaattgatgcagagaggtgaaggctgagaagccgatgcatgcattttatactgctgccatgccaccagccggggggaCctaccgacctatatatacttggcctacttgtgcatcatcggcttttcaatcacgagcccacaaatctacttcagaggagatcgagcaaaattcttgggagtggtccaagaagcgagtcatgcggtccctaactacaaatgcagagggagctttttctatatggtttctaggtagcatttgagtaaatggaaatctcgtaccttccttttcaggaccctgtttgcatcttgtagcatttgttcctgaagaaaagttcaatattggagcaattagataaaaacAaaccgaatttgccactgaaagaggtacaagtattcactgtagtgtagtatatcatttggcggcattgaagaagataTttcagtgttacctttctctttaggtcgcagagttcatcaagtagtacctgagtctgcaaaatatgtatgaaatcatgcacagaagagtattagaagtcacctagcttggagcagctttttgaatcgtagagaataatatatatcccttaaTttttttaatgaaaaaaaggaaagcaaatagttgcaccttttctaatcaattggcagtcaccaagtgtacagcaatgtactccctctgtaaaaaaaaactaaacctaggaggggatatgacaTtttttaggacaacgaatctggacaaagggctgtctagatttattatactaagatatgtcacatccttgtttaggttgagttttttttttttaagaacGGAGggagtatcagtgtggcaaaatgcagttactttttttttaacgttacagttacttgttattcacaactcctagtcagaaaatcccacttttaatttaatccaacctttgtaaattattctaattaagcttaagcaacacaacaactaagggttaagcctcgtagaacattgatcttttatcacatggatgttgggtaagccaacaaatacaaatccacatcacatattaccacatttgtatagcttcagatatagtgcatagtaagcaaaccataATatatgtaacaaagaagctagcgcaacgttacggatgaaatctgaaaattttaatcggtaagtatactacatatttatacttgaacgagtttccttgctatgttaatttacctttcttgatctgatttgcttcaaggttctgactacttgactctcaagctgctcaagttcatttgtagccagtggagctaaatcctcacctagaaggttcctgcaacattatcaccagttaaaatatttTGCaaaacaaagggagcaatggagtagagccagtgttctttagactaaaatattagacccaacaaaattgaagaacacatgtacatatgagtatgaacataaagaatctattacctttgtgattgttgcagaatctcaacatgtgccttcaagttcacatattcctgatagttgttctacattataaagaaaagcgaattgaaaacaagctaaaattttAaatttagttattcttgtcatacacagcacaaaagcggcactaatgatttactgaaagtgtactgataatatacatttgtaatagtgacagcgtttgacctatattaatctacaaacagttgatctatatatatattgtattgtattattaagatagcttaaatggaagctaccacatttgctctggaggctaaaacctatattaatcggagaaaagggaaaaaaaatgtttggaccattagatcgtggggtctagctcattatagtttagattgatgaatatatctgcatataaaatgcaattgtagctatagaaaaaaaaggtagaaattgtatatgaaatccaattctattttttttaaaaaaaatatattaggtagaaaatacaattgtatcaatcgaatagagttaaagtattgcatatcaaatctaattctacttttgaaatctagcaccatgcaatttgcatgagacaatcgcctagttatattaagtataggccaagtTAtatttgcagtacgtataataaacaaattaaagatgtgaacaacatggtaattaaaactaaaatggtccctgtagagagatgcgtagagtttatgatgaatgccaataattgacggagtaactacgaagagaTACtatatatactctatctagtgcacccagatccccatggatatgttcaataaacatttatcacatttacatcatgtatgcgttgcccatttagctagataaatactgttcttatctgcttctttgggcttgcaagcaaatccgaagctccacaaacttaactaaactggaattcaaaggaaGTgcacaacgcattagtatgtgcttgcatgagaattgttgaacaaagaaatccttatagaaggtaatgcatgaaatgcactaggccaatggccatcgatttatacatgtgttcccaatttccggtgacttaggtatctctggtcttaatgcccggtgcaaattacaaatgggcacaattgatctttCtttttccttgtcaaaagttaaatggccggtgaggctagctatgagaggaaaggaatctttgccttaagaagagtcattatatttcaagctatggatgtctatgactcAAGaatttactattctttcTtctcatagtgagagaggagtacggtttttatgatcacatctcatgagtacttttAaaagttaaatttcatgagaaaacagttttctagtgtaaagattgcctctcataaatcaatctctagtagattataacacaaataaaaatactggaagcaattacctgatggttaattttctaggggacattatgcaaaaatgattatgtcaataaaaACatcaacaaataatgtgccataaactgaataaaattatcaaacctgcatctcatcgctagttggtgcggcagcatcttgcgaagcataaatgtacctctggtatctctcaagcgtcttaagcatgctgaaatatgaattagagatagatggttaactagcacactatacagaaaatatgTTtcccctaaaagaaatagtatattaataaagctgttaattatgtcttccgatcaatttgtgaatgtttcgttgtcattttcttcctcaggaaaaaaaaatcaagcctcctttagggtacattcattggagagggttgggaactgttccctctcgcacacaaaacaaagtaacgcacgattaattaagtattagcttaaaaaaacttaaaaatagattaatatggttttttataagcaactttcttatagatttttatAaaaaacgtattgtttagcaatttgggaaacgtacaaagtaaacgagataatagaagttgagaaagtgtctaaaagaagtaaagaacccaacctaagtccatcttaggtgctttggtgccaccagaaaattgattataccaaattaaacaagaaaaatgcaaataaatatatggaaaatatagctttAaatttgtatgccgctccatccgaagtgttttcgtcccccccccccCTcacctttaggagaaaaataaaaggtgatctaattaacaaagcagccctagtctgtgccaagccactaattgtacatccTttttcactgaggatgaaggataaaaataaaacaatattctaGTgtgttataacccaataagacaccattttttcctagcaatatttaaaaattattaatatgagaaacgtgtatctatggatgatgcatgtcacatatgacAaattaacagttcaccaacggtgaaactttgtgtgatcatcacatggtagctagtgaaCacatatactacaaaaacaaggtactgtggcacttgataaagaaccaataacggcatagcattattatacagaaatctcttattcaaatacagtaatctgtctctatggatgataccccttataacaacaaattaacagtgttaaccaagggttgaaacctgtgtgatcatcatacggtagctagcgcgaatgcatattcctacaaaaatatggtacatatatatatgatacttgacaaagaaccaacaagaaacagacAAAaaaactggacccttatggcaatttagtgattgattggaaaaactaaatgtgcaataattcagtaatagaaactactaggtcatttgatttccctttgtaacgtatatattaattgtaagaatgtagcatacattcatatggggaaaaaggccaaaacatattagcatccccatacaaactataactcactagcatgtatattaacatggtcagtgtattctttaatatgcaatttttgctaatgtgagttccacatttcatgcaaactgccccaaatttgaagattatcctgtatgggtcaattacacgttaatataataatatactataaattagcaattctacctcacagagtgtctatatatatggacggtgcatttgcctacagtgaattgttttatagagctgaaagtagttgtacagttgatcttttccaacgtagctataaggtaacagtaTtttggtactgtcagatatacaaagtcagagcttgtacgttaaagtagttcttgcaagttccaagccgtagatgaattaacacatgacgatgttggtgagtttaactagtgtgttgtgttcatgagatatttattgcagcaagtttataattaacacacaaaagtatccttgataatatataagtaaacgacaaattttgatcaaaagcggcattcttcagcaaattttgctcatcaacagctagtactaaaagtggcattcttccaagtaaattatttaaactccatcaagttaaatcctccaaattttaggctaattcagattctagcatttgtacacgccatgatatttacatcaaatgaaacccctttcttaatttttcttgcctgctatgacacacatacatatatacacacacggtatatatacgcatatatgtacatgtctggatctcctgccgaggacaacctcgtcttctttgccttgttcttttgtagccttttttacatgaacagtagcttcgcccaatagaacagaaagaaaggaacaggcgtagaaaaaacaacacgtacgaaatcatggcccctcccataagttcatgcacggacgacgacggatacagtacacgcgcgagaaaattcagatcggtcgtgatttcttgcagattgtgcgcgcaaagatggagcaaattgcggtttggggagtgcaggttaagcaagttgagagaatttgattaggggaagaggaggaagctgagatgagtgagaGgggcagtgggtttacttggatgaggaggagaactggtagaggcggccggcgtgggagaagaggacgagggcgacctcggcgtcgcagaggatggagagctcgtaggccttcttgagcaggccgttccgccgcttggcgaacgtcacctgccggctgatcttgttctcgatccgctgaagcaccaccttgcctcgccccatctcgatctcccgctcgagatctctcttcagtcttcccttcctctctctctctctagatcgatctctagcagaccagcaaatcaacacaaacctctgaagaattttcttcagcaaagcttagctgctagctcttctcatccatgcagcatctgcatgatggatggatcgatcagtgcatgaaatcaattccgattccttgctctctctcgctagctctctctcctactgtcacacacgcacaccggccggcctgcagctgatctgctcaagctgtggcttaattag
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| CDS seq | atggggcgaggcaaggtggtgcttcagcggatcgagaacaagatcagccggcaggtgacgttcgccaagcggcggaacggcctgctcaagaaggcctacgagctctccatcctctgcgacgccgaggtcgccctcgtcctcttctcccacgccggccgcctctaccagttctcctcctcatccaacatgcttaagacgcttgagagataccagaggtacatttatgcttcgcaagatgctgccgcaccaactagcgatgagatgcagaacaactatcaggaatatgtgaacttgaaggcacatgttgagattctgcaacaatcacaaaggaaccttctaggtgaggatttagctccactggctacaaatgaacttgagcagcttgagagtcaagtagtcagaaccttgaagcaaatcagatcaagaaagactcaggtactacttgatgaactctgcgacctaaagagaaaggaacaaatgctacaagatgcaaacagggtcctgaaaaggaagcttgacgagatcgacgtagaggcagctcccccacagcctccatggaacggaaactgcagcaatggccatggcggcggcggcggcgtgttttccagtgagcctccccaaccagagcacttcttccaggccctcgggcttcatgccgtggacgtgaaccagccgccggcgccgccaccgggcggttatcctcctgagtggatggcctag
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| Protein seq | MGRGKVVLQRIENKISRQVTFAKRRNGLLKKAYELSILCDAEVALVLFSHAGRLYQFSSSSNMLKTLERYQRYIYASQDAAAPTSDEMQNNYQEYVNLKAHVEILQQSQRNLLGEDLAPLATNELEQLESQVVRTLKQIRSRKTQVLLDELCDLKRKEQMLQDANRVLKRKLDEIDVEAAPPQPPWNGNCSNGHGGGGGVFSSEPPQPEHFFQALGLHAVDVNQPPAPPPGGYPPEWMA |
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| Function | MADS-box transcription factor 34 [UniProtKB/Swiss-Prot:Q6Q9H6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0034890 | OsLima_03g0034890.01 | Chr03 | 34089240 | 34095910 | - | NAM | ||
| CDS seq | atggggcgaggcaaggtggtgcttcagcggatcgagaacaagatcagccggcaggtgacgttcgccaagcggcggaacggcctgctcaagaaggcctacgagctctccatcctctgcgacgccgaggtcgccctcgtcctcttctcccacgccggccgcctctaccagttctcctcctcatccaacatgcttaagacgcttgagagataccagaggtacatttatgcttcgcaagatgctgccgcaccaactagcgatgagatgcagaacaactatcaggaatatgtgaacttgaaggcacatgttgagattctgcaacaatcacaaaggaaccttctaggtgaggatttagctccactggctacaaatgaacttgagcagcttgagagtcaagtagtcagaaccttgaagcaaatcagatcaagaaagactcaggtactacttgatgaactctgcgacctaaagagaaaggaacaaatgctacaagatgcaaacagggtcctgaaaaggaagcttgacgagatcgacgtagaggcagctcccccacagcctccatggaacggaaactgcagcaatggccatggcggcggcggcggcgtgttttccagtgagcctccccaaccagagcacttcttccaggccctcgggcttcatgccgtggacgtgaaccagccgccggcgccgccaccgggcggttatcctcctgagtggatggcctag
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| Protein seq | MGRGKVVLQRIENKISRQVTFAKRRNGLLKKAYELSILCDAEVALVLFSHAGRLYQFSSSSNMLKTLERYQRYIYASQDAAAPTSDEMQNNYQEYVNLKAHVEILQQSQRNLLGEDLAPLATNELEQLESQVVRTLKQIRSRKTQVLLDELCDLKRKEQMLQDANRVLKRKLDEIDVEAAPPQPPWNGNCSNGHGGGGGVFSSEPPQPEHFFQALGLHAVDVNQPPAPPPGGYPPEWMA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0753100 | RBH | 0.0 | 0.0 | 4.535445 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g54170 | RBH | 0.0 | 0.0 | 1.165695 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0753100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0035050 | RBH | 0.0 | 0.0 | 6.484746 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0034720 | RBH | 0.0 | 0.0 | 4.903141 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0034810 | RBH | 0.0 | 0.0 | 3.724949 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0035120 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0034690 | RBH | 0.0 | 1.823063 | 11.551527 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0532100 | RBH | 0.0253515 | 0.062101 | 52.4616335 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0034470 | RBH | 0.0 | 0.0 | 1.523510 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0531200 | RBH | 0.0200135 | 0.3700575 | 57.920042 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0034930 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0034630 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0034730 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0034670 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G034480 | RBH | 0.0 | 0.0 | 5.967420 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0034320 | RBH | 0.000000 | 0.0 | 5.589261 |
