Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0034350 | OGI:03085860 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:33676212-33679952 | ||||||||
| Gene Symbol | OsSTA114 | ||||||||||
| DNA seq | atataaggagaagaaacccagtcctttccatttcacacatacacaaccacaggcagatcgtccgttgtgttctttgccgaggagcgagatcgacaaagaacgaagtccatgacgagcagcggtggcgccgggtgcagccgcagccacagcttcagcggcatcagcagcgccgcggccaccggcggcgccggcgccggcgccgacgtgttcgtccgggcggcggacaacgagatgtacgtgcgggcggacaagatcgacctcaagaacctggacgtgcagttcgagaagacgcggtccaaggtgtggctcgagcagcaccgctcgtcgtcggcggcgtcgccgctgccgctgctggagtgggagatcgacctcgccaagctcgacatccagaaccaggtcgcccacggcaccttcggcgtcgtctaccgcggcacctacgacggccatgacgtcgccggtaaaaaatcgaatcaaatcaaccttcagatctctcgcgtcgatcaactcttttctatacatgctattactagtattagactcgtagactgtcaccgtgatgaacgtgcatgtcgcgctttgctagccgtacgcccgtacgccgcaccatagcactttttgatacggtgaatcgtcgtctgagcagtgagggctcgtttgtcaccaagagattttgtaaaatagccctttgtgttttcctttgtagtgatggttagtttttgttgttttccttaccattactggacattaggtttcgcttcccgtcggccagccggctgcgagaaccgaaacagaggagaacgatgagcggcggtggtggggttgatgacgatggtgatggtgatggtggtcagtgcaccgccggaagttagtatgggaggtgaaggtggacggaagcggatcaaggaggagggagggggggggggAggggggaggcgaggccggcgtaggctccgccgaagaggaacagtagacgttggttggtaggggtggaaggttggtgatgaggaactcctgttgaccacctttttggctctagcgaggtatagtaaacacgtgagttggcgcgtgcatcagtagaggctgttggagatgccgtgcgtgcgtcagtagaggctgttgcaggtggtggagaagataggagatgtcgtttgctaaggatgtttttggtgccgcgtgtcagtagagatatgaattggtgtggagggcaagacaacaatgatatagtgtgatgcaagctatgtggtaacggtcggtggggattcttaacttatggtaagctgtgtggtagtacattaattatgtacggaagggtgaattcctcggatccacgtgacctcaatttatggcataaagttctagtgtttctcggggataaatactccctagttaggaatatatatgtgtgtattcaacattagatagaatgatagctaacatagacctaagaaactttttatttaaaattttgttatttggaacattcagaatgcaattttggcaagatttacttctacaaaatagttgtgaaacattaattgtagtgcggttattgtatttttatttgtgagttttcaaggtcccttgtataaaagtggcaaatcttgattgaggcaaaaatcttaatcacactgtaccatttaattacagcttattcaattagctgaaatggaagaagggaaataatatctaggtgttgatggtcccataacatccatttgcaaagaagattatttagtaacttttactcaaacattagtaccATatatacatcagccgtatgtgaccctttatgcaagggagtacacctctatctagcatacattcaagttccttgatggagtaaaattttgggtacatatttttctagctagtagtaaatagatatcattttcccccaaagaacggacccattattacattacagatttacacaaggtcgtttgtaatttaattgacctattgcctgtaaacaatttgttgctagatgttatcactgatccagatgacaaacatcaatataaaaaatactccatccgtttcaggttataagatgttttgattttggttaaagtcaaactactttaagtttgataaagtttgtagaaaaaagtagtatcattttcaacctaagacaaatttattatgaagatatatatatatatatatatatattatatatatatatatatatatataatatatatatatatatatatatatatatatatatatatatatatattcaattattaatttaatgaaactaattttgtattatacatactatatttgtatataaacttaatcaaacttaaaacagtttgactttgatcaaaatcaaaacgtcttataacctgaaacggagggagtatgcactaatatttacatttgttgctcaatgtgtgttcaatgcagtgaaggtgctggactgggggcaggaggggcaggagtcgacggcgaagcaccgggaagccttcgagaaggaagtcgccgtctggcagaagcttgatcaccccaacgtcaccaaggtgagcagcaatcaatccacgccgttgaatccgtcgtgtacggtgtctgatcgatcgatctgtctgtgtacatgcgtgcagttcgtgggcgcgtcgatggggacgtcgcatctgaagatcccgtcggcgaaggcggagtcgcggtccagcagcgtcggcggtggcagcgccggcggcggcggggggcagcgttgcgtggtggtggtggagtaccagcacggcgggacgctgaagacgctgctgtacaagcaccgggacaagaagctgccgtacaagaaggtggtgcagctggcgctggacatggcgagggggctgagctacctgcacggggagaagatcgtgcaccgcgacgtcaaggcggagaacatgctgctcgacaggaagaagacgctcaagatcgccgacttcggcgtggcgcgcgtggaggccggcgccgacggcgacgacatgaccgggcagacgggcaccatcgggtacatggcgcccgaggtgctccagggccgcgcctacgaccacaagtgcgacgtctacagcttcggcgtcctcctctgggagacctactgctgcgccatggcctaccccaactacagcctcgctgacatctcctaccacgtcgtcaagctggtagatagacacatctcgccatgatcaatcgcctccccaagattcttgtcgattgattgattttgcttcttgtcgatcaatggatcatgggtgacaggggatcaggccggacataccgaggtgctgcccgaaggcgatggcggacatcatggcgaggtgctgggacgcgaacccggacaacaggccggagatgtcggaggtggtggcgctgctggagaagatcgacacctcgcgcggcaagggcggcatgacccccgtcccggagcacgcctcccagggttgctcctgcttcggcttctcccgcggcagcgcgtgagcgaaactgctagagcaaagctagcacctcgccggccgggacggctggccgtctcgatcctcgaactgtcgaacaccatccgtgcaggagttgcagctgtgtcgatccgatccgttacctgattttcttccgggattgatgtgtgttgttggcttgaaactatgcctgatctcagtgatgttgttgtcagctttagctttggtatgcaggatgttacctcgttgtgaacttgtgaggagttcgttcatctctattgcctgggtctacattttg
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| CDS seq | atgacgagcagcggtggcgccgggtgcagccgcagccacagcttcagcggcatcagcagcgccgcggccaccggcggcgccggcgccggcgccgacgtgttcgtccgggcggcggacaacgagatgtacgtgcgggcggacaagatcgacctcaagaacctggacgtgcagttcgagaagacgcggtccaaggtgtggctcgagcagcaccgctcgtcgtcggcggcgtcgccgctgccgctgctggagtgggagatcgacctcgccaagctcgacatccagaaccaggtcgcccacggcaccttcggcgtcgtctaccgcggcacctacgacggccatgacgtcgccggtaaaaaatcgaatcaaatcaaccttcagatctctcgcgggcaggagtcgacggcgaagcaccgggaagccttcgagaaggaagtcgccgtctggcagaagcttgatcaccccaacgtcaccaagttcgtgggcgcgtcgatggggacgtcgcatctgaagatcccgtcggcgaaggcggagtcgcggtccagcagcgtcggcggtggcagcgccggcggcggcggggggcagcgttgcgtggtggtggtggagtaccagcacggcgggacgctgaagacgctgctgtacaagcaccgggacaagaagctgccgtacaagaaggtggtgcagctggcgctggacatggcgagggggctgagctacctgcacggggagaagatcgtgcaccgcgacgtcaaggcggagaacatgctgctcgacaggaagaagacgctcaagatcgccgacttcggcgtggcgcgcgtggaggccggcgccgacggcgacgacatgaccgggcagacgggcaccatcgggtacatggcgcccgaggtgctccagggccgcgcctacgaccacaagtgcgacgtctacagcttcggcgtcctcctctgggagacctactgctgcgccatggcctaccccaactacagcctcgctgacatctcctaccacgtcgtcaagctggggatcaggccggacataccgaggtgctgcccgaaggcgatggcggacatcatggcgaggtgctgggacgcgaacccggacaacaggccggagatgtcggaggtggtggcgctgctggagaagatcgacacctcgcgcggcaagggcggcatgacccccgtcccggagcacgcctcccagggttgctcctgcttcggcttctcccgcggcagcgcgtga
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| Protein seq | MTSSGGAGCSRSHSFSGISSAAATGGAGAGADVFVRAADNEMYVRADKIDLKNLDVQFEKTRSKVWLEQHRSSSAASPLPLLEWEIDLAKLDIQNQVAHGTFGVVYRGTYDGHDVAGKKSNQINLQISRGQESTAKHREAFEKEVAVWQKLDHPNVTKFVGASMGTSHLKIPSAKAESRSSSVGGGSAGGGGGQRCVVVVEYQHGGTLKTLLYKHRDKKLPYKKVVQLALDMARGLSYLHGEKIVHRDVKAENMLLDRKKTLKIADFGVARVEAGADGDDMTGQTGTIGYMAPEVLQGRAYDHKCDVYSFGVLLWETYCCAMAYPNYSLADISYHVVKLGIRPDIPRCCPKAMADIMARCWDANPDNRPEMSEVVALLEKIDTSRGKGGMTPVPEHASQGCSCFGFSRGSA |
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| Function | Serine/threonine-protein kinase STY13 [UniProtKB/Swiss-Prot:Q9ZQ31] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0034350 | OsLima_03g0034350.01 | Chr03 | 33676212 | 33679952 | + | NAM | ||
| CDS seq | atgacgagcagcggtggcgccgggtgcagccgcagccacagcttcagcggcatcagcagcgccgcggccaccggcggcgccggcgccggcgccgacgtgttcgtccgggcggcggacaacgagatgtacgtgcgggcggacaagatcgacctcaagaacctggacgtgcagttcgagaagacgcggtccaaggtgtggctcgagcagcaccgctcgtcgtcggcggcgtcgccgctgccgctgctggagtgggagatcgacctcgccaagctcgacatccagaaccaggtcgcccacggcaccttcggcgtcgtctaccgcggcacctacgacggccatgacgtcgccggtaaaaaatcgaatcaaatcaaccttcagatctctcgcgggcaggagtcgacggcgaagcaccgggaagccttcgagaaggaagtcgccgtctggcagaagcttgatcaccccaacgtcaccaagttcgtgggcgcgtcgatggggacgtcgcatctgaagatcccgtcggcgaaggcggagtcgcggtccagcagcgtcggcggtggcagcgccggcggcggcggggggcagcgttgcgtggtggtggtggagtaccagcacggcgggacgctgaagacgctgctgtacaagcaccgggacaagaagctgccgtacaagaaggtggtgcagctggcgctggacatggcgagggggctgagctacctgcacggggagaagatcgtgcaccgcgacgtcaaggcggagaacatgctgctcgacaggaagaagacgctcaagatcgccgacttcggcgtggcgcgcgtggaggccggcgccgacggcgacgacatgaccgggcagacgggcaccatcgggtacatggcgcccgaggtgctccagggccgcgcctacgaccacaagtgcgacgtctacagcttcggcgtcctcctctgggagacctactgctgcgccatggcctaccccaactacagcctcgctgacatctcctaccacgtcgtcaagctggggatcaggccggacataccgaggtgctgcccgaaggcgatggcggacatcatggcgaggtgctgggacgcgaacccggacaacaggccggagatgtcggaggtggtggcgctgctggagaagatcgacacctcgcgcggcaagggcggcatgacccccgtcccggagcacgcctcccagggttgctcctgcttcggcttctcccgcggcagcgcgtga
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| Protein seq | MTSSGGAGCSRSHSFSGISSAAATGGAGAGADVFVRAADNEMYVRADKIDLKNLDVQFEKTRSKVWLEQHRSSSAASPLPLLEWEIDLAKLDIQNQVAHGTFGVVYRGTYDGHDVAGKKSNQINLQISRGQESTAKHREAFEKEVAVWQKLDHPNVTKFVGASMGTSHLKIPSAKAESRSSSVGGGSAGGGGGQRCVVVVEYQHGGTLKTLLYKHRDKKLPYKKVVQLALDMARGLSYLHGEKIVHRDVKAENMLLDRKKTLKIADFGVARVEAGADGDDMTGQTGTIGYMAPEVLQGRAYDHKCDVYSFGVLLWETYCCAMAYPNYSLADISYHVVKLGIRPDIPRCCPKAMADIMARCWDANPDNRPEMSEVVALLEKIDTSRGKGGMTPVPEHASQGCSCFGFSRGSA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0745700 | RBH | 0.0 | 0.0 | 1.637650 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g53410 | RBH | 0.0 | 0.0 | 0.510442 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0745700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0034480 | RBH | 0.0 | 0.0 | 0.783126 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0034160 | RBH | 0.0 | 0.0 | 2.531449 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0034250 | RBH | 0.0 | 0.0 | 3.683030 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0034560 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0034130 | RBH | 0.0 | 0.000000 | 3.554367 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0524100 | RBH | 0.0938635 | 0.1507535 | 0.199822 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0033920 | RBH | 0.0 | 0.0 | 0.499709 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0523900 | RBH | 0.075137 | 0.1382635 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0004470 | SBH | 0.508214 | 0.719219 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0034370 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0034080 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0034100 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0034120 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G033900 | RBH | 0.0 | 0.0 | 0.656877 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0033730 | RBH | 0.0 | 0.0 | 4.097210 |
