Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0032980 | OGI:03082840 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:32406064-32408517 | ||||||||
| Gene Symbol | OsbHLH018 | ||||||||||
| DNA seq | attggtggaaacgaaagagacctgaacccccccccccccccccccaatctccataggttggtctcacacgctcctcatcctctctctcctctcccacacattcatcacaagaacaactcaatctcactctcttttgagcacagaaacaaatgcaaatgctgttggttctgactgttgtgttgtgggtgtttggtttatgagcaggagtgtgatttgagctctcaagaccccccatctttggtttcgaggaattaatcgtcgagggaagaagggaagtagaaatggcgacgcagtggttctccaatatggtaaattttttggtcatctcgatgttaattgtggattcgagtatggttgtgtgctgatgttggatcgatccatggtttctttggtggcaggtgatggatgagccgagcttttttcaccagtggcagtcggatgggatgctggagcagtacacggagcagcagatcgccgtcgcgttcgggcaggccggcgaggcggacgcggcggcggcggcggcggcgacgatggtgcagcagcagcagtacgcggcggcggcggcggcggagcaccggccgcggaaggcggcgaaggtgaacaccagctgggactcgtgcatcacggagcagggctccccggcggactcctcctcgccgaccatcctctccttcggcggccacgccgacgccgccgccgccgcggcgttcgccagcgcggggcaggcgcagagcgccccgtactacggcggcgcctccgccgcggccttgaagcccaagcaggagctggacgccgccgccgcgcccttctcccaggcgcgcccggtcaagcggagctacgacgccatggtcgccgccgacgtcgccaaggcccccgccaccgccgcctcccggcctgcctcccagaaccaggaacacatcctcgccgagcggaagcgccgcgagaagctcagccagcgcttcatcgccctctccaagatcgtccctggcctcaagaaggtaggcaggcacacatccaaacaccttgcgtgcatggcttcctcttcctatttcctgacctagcaaagctccgatgattgacgaaccttgatttgccgatgcagatggacaaggcgtcggtgctgggcgacgcgatcaagtacgtgaagcagctgcaggaccaggtgaaggggctggaggaggaggcgcggcggcggccggtggaggcggcggtgctggtgaagaagtcccagctgtccgccgacgacgacgacggctcgtcctgcgacgagaacttcgacggcggcgaggccaccgccgggctgccggagatcgaggcccgcgtgtcggagcgcaccgtgctggtcaagatccactgcgagaaccgcaagggcgccctcatcaccgccctctccgaggtcgagaccatcggcctcaccatcatgaacaccaatgtgctccccttcacctcctcctccctcgacatcaccatcatggccaccgtaagctcccaatctccctcgaatttattttaacccccaaattaatcaccttttacgctacatggattaaaaaggaatggtgatgatgttcttgcaggctggagagaacttctcattatcagtcaaagatatcgtcaagaagctaaatcaagcattcaagttatccctgtgaaggacttgctttcctgatcaagtctaatctagatcaaatctttggtttttaatcttcctactacctttttatcattagccttgagagaaatctgaggctgatggttctaattaggtcctttccctgcttctgcttctgaagagagtttgcttgcaatccaccacagagcacaccccctcaaggatttagccattaaccacctgtttttgctgcatgggtgcagagaatttgcagattacctaaatatccacctacaagtcttctattttctctcccatcacatttttttgcatggattgagctagtcactccatgttcttgggagagggtagaaatgtaaaaaagagacctgtctttttctagggcctgtttatcaaggggagtttgactttttcaaaaaaaccttattttcatttctccccttctgcaatgttgccctttgatttcaccctgtttttctatgagaggattgaggtttttcaaacccaaataccaacctttgctggcatctcatacactatcctatcacacactgttcccaaacccaaaaggcttcaaattgtggagaaaatggtgccttccttttttcagctctgaggtggacttttgcaagctcttgattcagaagtagtgtagggtgtgtgtctctcttctcttttttagggtcatacaagctggccccagcttgattgcaccctttgcttgtagtgtcctttgtgggttttgttgtaacaggatcaagatgtagctgttccctcttgtttacacaagtataaAAATaaataaatgtgcttgttgttaa
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| CDS seq | atggcgacgcagtggttctccaatatggtgatggatgagccgagcttttttcaccagtggcagtcggatgggatgctggagcagtacacggagcagcagatcgccgtcgcgttcgggcaggccggcgaggcggacgcggcggcggcggcggcggcgacgatggtgcagcagcagcagtacgcggcggcggcggcggcggagcaccggccgcggaaggcggcgaaggtgaacaccagctgggactcgtgcatcacggagcagggctccccggcggactcctcctcgccgaccatcctctccttcggcggccacgccgacgccgccgccgccgcggcgttcgccagcgcggggcaggcgcagagcgccccgtactacggcggcgcctccgccgcggccttgaagcccaagcaggagctggacgccgccgccgcgcccttctcccaggcgcgcccggtcaagcggagctacgacgccatggtcgccgccgacgtcgccaaggcccccgccaccgccgcctcccggcctgcctcccagaaccaggaacacatcctcgccgagcggaagcgccgcgagaagctcagccagcgcttcatcgccctctccaagatcgtccctggcctcaagaagatggacaaggcgtcggtgctgggcgacgcgatcaagtacgtgaagcagctgcaggaccaggtgaaggggctggaggaggaggcgcggcggcggccggtggaggcggcggtgctggtgaagaagtcccagctgtccgccgacgacgacgacggctcgtcctgcgacgagaacttcgacggcggcgaggccaccgccgggctgccggagatcgaggcccgcgtgtcggagcgcaccgtgctggtcaagatccactgcgagaaccgcaagggcgccctcatcaccgccctctccgaggtcgagaccatcggcctcaccatcatgaacaccaatgtgctccccttcacctcctcctccctcgacatcaccatcatggccaccgctggagagaacttctcattatcagtcaaagatatcgtcaagaagctaaatcaagcattcaagttatccctgtga
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| Protein seq | MATQWFSNMVMDEPSFFHQWQSDGMLEQYTEQQIAVAFGQAGEADAAAAAAATMVQQQQYAAAAAAEHRPRKAAKVNTSWDSCITEQGSPADSSSPTILSFGGHADAAAAAAFASAGQAQSAPYYGGASAAALKPKQELDAAAAPFSQARPVKRSYDAMVAADVAKAPATAASRPASQNQEHILAERKRREKLSQRFIALSKIVPGLKKMDKASVLGDAIKYVKQLQDQVKGLEEEARRRPVEAAVLVKKSQLSADDDDGSSCDENFDGGEATAGLPEIEARVSERTVLVKIHCENRKGALITALSEVETIGLTIMNTNVLPFTSSSLDITIMATAGENFSLSVKDIVKKLNQAFKLSL |
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| Function | Transcription factor bHLH25 [UniProtKB/Swiss-Prot:Q9T072] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0032980 | OsLima_03g0032980.01 | Chr03 | 32406064 | 32408517 | + | NAM | ||
| CDS seq | atggcgacgcagtggttctccaatatggtgatggatgagccgagcttttttcaccagtggcagtcggatgggatgctggagcagtacacggagcagcagatcgccgtcgcgttcgggcaggccggcgaggcggacgcggcggcggcggcggcggcgacgatggtgcagcagcagcagtacgcggcggcggcggcggcggagcaccggccgcggaaggcggcgaaggtgaacaccagctgggactcgtgcatcacggagcagggctccccggcggactcctcctcgccgaccatcctctccttcggcggccacgccgacgccgccgccgccgcggcgttcgccagcgcggggcaggcgcagagcgccccgtactacggcggcgcctccgccgcggccttgaagcccaagcaggagctggacgccgccgccgcgcccttctcccaggcgcgcccggtcaagcggagctacgacgccatggtcgccgccgacgtcgccaaggcccccgccaccgccgcctcccggcctgcctcccagaaccaggaacacatcctcgccgagcggaagcgccgcgagaagctcagccagcgcttcatcgccctctccaagatcgtccctggcctcaagaagatggacaaggcgtcggtgctgggcgacgcgatcaagtacgtgaagcagctgcaggaccaggtgaaggggctggaggaggaggcgcggcggcggccggtggaggcggcggtgctggtgaagaagtcccagctgtccgccgacgacgacgacggctcgtcctgcgacgagaacttcgacggcggcgaggccaccgccgggctgccggagatcgaggcccgcgtgtcggagcgcaccgtgctggtcaagatccactgcgagaaccgcaagggcgccctcatcaccgccctctccgaggtcgagaccatcggcctcaccatcatgaacaccaatgtgctccccttcacctcctcctccctcgacatcaccatcatggccaccgctggagagaacttctcattatcagtcaaagatatcgtcaagaagctaaatcaagcattcaagttatccctgtga
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| Protein seq | MATQWFSNMVMDEPSFFHQWQSDGMLEQYTEQQIAVAFGQAGEADAAAAAAATMVQQQQYAAAAAAEHRPRKAAKVNTSWDSCITEQGSPADSSSPTILSFGGHADAAAAAAFASAGQAQSAPYYGGASAAALKPKQELDAAAAPFSQARPVKRSYDAMVAADVAKAPATAASRPASQNQEHILAERKRREKLSQRFIALSKIVPGLKKMDKASVLGDAIKYVKQLQDQVKGLEEEARRRPVEAAVLVKKSQLSADDDDGSSCDENFDGGEATAGLPEIEARVSERTVLVKIHCENRKGALITALSEVETIGLTIMNTNVLPFTSSSLDITIMATAGENFSLSVKDIVKKLNQAFKLSL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.180907 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0725800 | RBH | 0.0 | 0.074468 | 5.393083 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g51580 | RBH | 0.0 | 0.049936 | 1.353145 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0725800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0033130 | RBH | 0.142667 | 14.051802 | 2.226952 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0032830 | RBH | 0.000000 | 1.544796 | 2.812038 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0032900 | RBH | 0.812322 | 26.675119 | 7.251125 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0033200 | RBH | 0.102552 | 1.591218 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0032790 | RBH | 0.958604 | 26.289244 | 10.423409 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0505700 | RBH | 3.8799355 | 30.30849 | 4.9210605 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0032540 | RBH | 0.083877 | 3.417339 | 0.375952 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0505400 | RBH | 5.382992 | 6.9657055 | 22.1929995 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0009380 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0032980 | RBH | 0.0 | 13.365933 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0032780 | RBH | 0.0 | 18.219278 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0032740 | RBH | 0.085376 | 2.759717 | 0.547941 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0032720 | RBH | 0.116839 | 21.252411 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G032530 | RBH | 0.077654 | 10.827967 | 1.524153 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0032380 | RBH | 0.937190 | 14.472721 | 3.628385 |
