Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0032260 | OGI:03081580 | 12/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:31864958-31867459 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttacatctacaaaagcacattttaaccttttctagaacacatatgttacttagaagcaggaagttcatgcaaaatttcatcgacaagataaccagggcggcactggaagagttatcttttactcaatctgtatagcatcAaagttcatcggattgtacattggctaaaagtttcctgtttcatttgaaccacctcagcaaaagcaacctgaagagtttgttgtgcaaaggtaaaaacttccccagacgttgatccttcccttgcatatctaagggcatcacggtgaagctcactgtaccgcaagcattcgtccaacacaaagccattctttgcttcttttgtccaccgtttcaatatgtaaacatctggtatggtgcgtacatcaagggccaagaatactcttagtatatgccggcacaagataccacaactctcaaacttgcagcagctgcacttagctatattgccagaagtatcatacctgactctgcatgtggcttcagtatcctcctttgtgacactatacacagcaatcaacccatcattgtcaagactagagatataatagcctaaagatccaatgaattcttcctcaagaatgttgaacacagttgttgtgtatatttctgacacttgtttcatcatgtttgagggggttcttaggacaggtctggtaaaagatgtggccagatcctccacagcttctctttctgaccaaccggccatcagatgctcaaacaatgaaatgaaaactggtaaagctgttcttctgttgaagtacttctcaaagatgtttctcaagctttcaggtctctgagatgctgcaagatcagcagtaaatacacctttgaaatatacaggaacccatttttgccgaattctgtacagagactggagccatgagttgtcatgcaagtcatacttatcaaggactttcttccaacttaactcaaacatttcaattgtttcaggctcattgatgcacacataaaattctctttcaaaagaaacatgcctaaaatatatgtcagccaaaatgtccttggatctctttaatatgtctgcagtaaaatacagatggtgcgtttgtggaaatatttttgctattgctgaaccaattgcttcattataaaccgttgttagtgacgtaggatggtgtgaacccattgctgcaatccagttctgaaagagccaaatgtaggaagcctccgtgaaatcagttaataatgcacaaccaaacatttcacgttgcaagtgatgattgacaccagaaaacataactaatggcaaaaggtcattattctcaacaaaagatgtctcgagtgttacggcatctccaaaatagtaatacgatgttcttgctttggcatcagcccagaaggcatgggttaagcaatcatttttctcgacttgaaatgcatatgaaaatgtgggattctcggcattcagccgcttgaagtatccaagaagcttttgcgtatcatccaacccaaatgcattacggcgtggttctcttatttcttgatcatttgtcgcctgcttttcaaaattcctccctaggtctgccagaggtgaattcaaggttggagcaattgaattctctcgaagaacactactttttgcaagaacaactacctcactgtttgactgaatgtagtgcaccttgtttggtacattggccagctcatgtgtatgtgccaagaaaagcttcgaaacaacccatttatcttgatccttcttcactatctcaaacatcgcttggcaaccttcccttggaacaccccggtttctctttctcctgttctcattttcttcgcacggtgtagccccctcccttgtgcaaacaaagcgccgcattacaaatgtctcatcctttggtgaacggcgggataatctgatacgtacatcaaagcccatacggctagcatacgcatagtagaatgtttgggcagattcataagaagggaattccattcctgcaaaaggttctagttgtgcatattcttcaggcgcaacgtatctcactatgcttggagctgcaacagcatgattgtgttccttgatgagcttgatcacaacccaccgcccataatatttctgactaacctcgatcatcgcatggcaaccctcccttattattgcacgctttctctttctcttgccagtgtcagtttgcttcttgtggtggaaaccttcctttgaacacacaaaacggcgcatgataatagactcatcattccttgagcgtcgggacttgctaatgcgcacagagaaacctactcgactagcataagccatgtagaacacctttgcagcctcttctgattcaaattccatcccaacaaaaggttcactattttccagattcgctttgctggaagtattattcatgtcaactggttcactgttgacatcaaatgccatctgattttcagtataatcatcattaagatcaacaagattgtccctcaacaaattatcttcactcgaggcattgtccat
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| CDS seq | atggacaatgcctcgagtgaagataatttgttgagggacaatcttgttgatcttaatgatgattatactgaaaatcagatggcatttgatgtcaacagtgaaccagttgacatgaataatacttccagcaaagcgaatctggaaaatagtgaaccttttgttgggatggaatttgaatcagaagaggctgcaaaggtgttctacatggcttatgctagtcgagtaggtttctctgtgcgcattagcaagtcccgacgctcaaggaatgatgagtctattatcatgcgccgttttgtgtgttcaaaggaaggtttccaccacaagaagcaaactgacactggcaagagaaagagaaagcgtgcaataataagggagggttgccatgcgatgatcgaggttagtcagaaatattatgggcggtgggttgtgatcaagctcatcaaggaacacaatcatgctgttgcagctccaagcatagtgagatacgttgcgcctgaagaatatgcacaactagaaccttttgcaggaatggaattcccttcttatgaatctgcccaaacattctactatgcgtatgctagccgtatgggctttgatgtacgtatcagattatcccgccgttcaccaaaggatgagacatttgtaatgcggcgctttgtttgcacaagggagggggctacaccgtgcgaagaaaatgagaacaggagaaagagaaaccggggtgttccaagggaaggttgccaagcgatgtttgagatagtgaagaaggatcaagataaatgggttgtttcgaagcttttcttggcacatacacatgagctggccaatgtaccaaacaaggtgcactacattcagtcaaacagtgaggtagttgttcttgcaaaaagtagtgttcttcgagagaattcaattgctccaaccttgaattcacctctggcagacctagggaggaattttgaaaagcaggcgacaaatgatcaagaaataagagaaccacgccacatattaaagagatccaaggacattttggctgacatatattttaggcatgtttcttttgaaagagaattttatgtgtgcatcaatgagcctgaaacaattgaaatgtttgagttaagttggaagaaagtccttgataagtatgacttgcatgacaactcatggctccagtctctgtacagaattcggcaaaaatgggttcctgtatatttcaaaggtgtatttactgctgatcttgcagcatctcagagacctgaaagcttgagaaacatctttgagaagtacttcaacagaagaacagctttaccagttttcatttcattgtttgagcatctgatggccggttggtcagaaagagaagctgtggaggatctggccacatcttttaccagacctgtcctaagaaccccctcaaacatgatgaaacaagtgtcagaaatatacacaacaactgtgttcaacattcttgaggaagaattcattggatctttaggctattatatctctagtcttgacaatgatgggttgattgctgtgtatagtatgtaa
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| Protein seq | MDNASSEDNLLRDNLVDLNDDYTENQMAFDVNSEPVDMNNTSSKANLENSEPFVGMEFESEEAAKVFYMAYASRVGFSVRISKSRRSRNDESIIMRRFVCSKEGFHHKKQTDTGKRKRKRAIIREGCHAMIEVSQKYYGRWVVIKLIKEHNHAVAAPSIVRYVAPEEYAQLEPFAGMEFPSYESAQTFYYAYASRMGFDVRIRLSRRSPKDETFVMRRFVCTREGATPCEENENRRKRNRGVPREGCQAMFEIVKKDQDKWVVSKLFLAHTHELANVPNKVHYIQSNSEVVVLAKSSVLRENSIAPTLNSPLADLGRNFEKQATNDQEIREPRHILKRSKDILADIYFRHVSFEREFYVCINEPETIEMFELSWKKVLDKYDLHDNSWLQSLYRIRQKWVPVYFKGVFTADLAASQRPESLRNIFEKYFNRRTALPVFISLFEHLMAGWSEREAVEDLATSFTRPVLRTPSNMMKQVSEIYTTTVFNILEEEFIGSLGYYISSLDNDGLIAVYSM |
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| Function | Protein FAR1-RELATED SEQUENCE 5 [UniProtKB/Swiss-Prot:Q9SZL8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0032260 | OsLima_03g0032260.01 | Chr03 | 31864958 | 31867459 | - | NAM | ||
| CDS seq | atggacaatgcctcgagtgaagataatttgttgagggacaatcttgttgatcttaatgatgattatactgaaaatcagatggcatttgatgtcaacagtgaaccagttgacatgaataatacttccagcaaagcgaatctggaaaatagtgaaccttttgttgggatggaatttgaatcagaagaggctgcaaaggtgttctacatggcttatgctagtcgagtaggtttctctgtgcgcattagcaagtcccgacgctcaaggaatgatgagtctattatcatgcgccgttttgtgtgttcaaaggaaggtttccaccacaagaagcaaactgacactggcaagagaaagagaaagcgtgcaataataagggagggttgccatgcgatgatcgaggttagtcagaaatattatgggcggtgggttgtgatcaagctcatcaaggaacacaatcatgctgttgcagctccaagcatagtgagatacgttgcgcctgaagaatatgcacaactagaaccttttgcaggaatggaattcccttcttatgaatctgcccaaacattctactatgcgtatgctagccgtatgggctttgatgtacgtatcagattatcccgccgttcaccaaaggatgagacatttgtaatgcggcgctttgtttgcacaagggagggggctacaccgtgcgaagaaaatgagaacaggagaaagagaaaccggggtgttccaagggaaggttgccaagcgatgtttgagatagtgaagaaggatcaagataaatgggttgtttcgaagcttttcttggcacatacacatgagctggccaatgtaccaaacaaggtgcactacattcagtcaaacagtgaggtagttgttcttgcaaaaagtagtgttcttcgagagaattcaattgctccaaccttgaattcacctctggcagacctagggaggaattttgaaaagcaggcgacaaatgatcaagaaataagagaaccacgccacatattaaagagatccaaggacattttggctgacatatattttaggcatgtttcttttgaaagagaattttatgtgtgcatcaatgagcctgaaacaattgaaatgtttgagttaagttggaagaaagtccttgataagtatgacttgcatgacaactcatggctccagtctctgtacagaattcggcaaaaatgggttcctgtatatttcaaaggtgtatttactgctgatcttgcagcatctcagagacctgaaagcttgagaaacatctttgagaagtacttcaacagaagaacagctttaccagttttcatttcattgtttgagcatctgatggccggttggtcagaaagagaagctgtggaggatctggccacatcttttaccagacctgtcctaagaaccccctcaaacatgatgaaacaagtgtcagaaatatacacaacaactgtgttcaacattcttgaggaagaattcattggatctttaggctattatatctctagtcttgacaatgatgggttgattgctgtgtatagtatgtaa
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| Protein seq | MDNASSEDNLLRDNLVDLNDDYTENQMAFDVNSEPVDMNNTSSKANLENSEPFVGMEFESEEAAKVFYMAYASRVGFSVRISKSRRSRNDESIIMRRFVCSKEGFHHKKQTDTGKRKRKRAIIREGCHAMIEVSQKYYGRWVVIKLIKEHNHAVAAPSIVRYVAPEEYAQLEPFAGMEFPSYESAQTFYYAYASRMGFDVRIRLSRRSPKDETFVMRRFVCTREGATPCEENENRRKRNRGVPREGCQAMFEIVKKDQDKWVVSKLFLAHTHELANVPNKVHYIQSNSEVVVLAKSSVLRENSIAPTLNSPLADLGRNFEKQATNDQEIREPRHILKRSKDILADIYFRHVSFEREFYVCINEPETIEMFELSWKKVLDKYDLHDNSWLQSLYRIRQKWVPVYFKGVFTADLAASQRPESLRNIFEKYFNRRTALPVFISLFEHLMAGWSEREAVEDLATSFTRPVLRTPSNMMKQVSEIYTTTVFNILEEEFIGSLGYYISSLDNDGLIAVYSM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.323296 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0718200 | RBH | 0.281964 | 0.580244 | 1.648478 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g50900 | RBH | 0.612512 | 0.453166 | 0.607814 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0718200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0032600 | RBH | 0.395605 | 14.866283 | 3.410688 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0011240 | SBH | 0.643070 | 3.513811 | 1.855230 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0032370 | RBH | 1.066013 | 1.881082 | 3.126893 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0011220 | SBH | 0.795520 | 0.389736 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0011090 | SBH | 11.623124 | 8.892706 | 10.267609 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0444100 | SBH | 6.0248155 | 27.4659245 | 5.853337 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0031840 | RBH | 0.136016 | 0.000000 | 0.925078 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0498900 | RBH | 2.7972815 | 4.0200255 | 13.314579 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0032290 | RBH | 0.612302 | 3.040725 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0032270 | RBH | 7.427455 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0011160 | SBH | 3.136905 | 2.345608 | 0.964813 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0032070 | RBH | 0.000000 | 3.209117 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G032030 | RBH | 0.306932 | 1.192263 | 2.497180 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0031880 | RBH | 0.464063 | 4.706016 | 4.944968 |
