Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0030301 | OGI:01056340 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:30290597-30293972 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TgtgtgcgagttgtctatttcaagaatagattggatctatccggctgcactttagaatattttttagtatttttcaaataaataagaaaagggtgcacgatctcgacgaattacttctgaataaatgcagaaatcatatgaaagaaccatagcatttcgcgacctattggtaaatcaaatcaactttgattctctatagaccaataATataagaccattaacacggttaaagctaaactgcttgaagtctaggcaaaagggggtactctttctacaactatattagaattagtaccaaatgctttaaacaggaaatagctaatgtagaatttatctgatatagaacactcatatcgataaaatggtttgaactatttactagaaggggcaccctgcccttttttatccaatgccgaatcgacgacctatgtataaaaaaaggagaaagtttttggatttgaagaaaaaagtaggaattctatccattttcaTtttccatttttctatttagtttttcttaatgaaattcaaaattttaactaaagggaaaatacaaataaaaaaacaactttgctgcccacgatagatttttatctaggcggaagagtcctcttaatatttatctagtcttatatgggtttcggtatattgaaatataaacagaaaagaaaagagagggtagagggtagtctcattacattaaaaaaaatatggaagtagccatagcaaaaaaagaaaaaaGggagcgtgagagccaaatgaatcgaaagattcatgtttggttcgggaagagatcataaaagttgtaaacttaatagcaaggtaatctactttcattaaaagatttattagataatcgaaaacagaggatcttgagtactattcgaaattcggaagaattgcgtagaggaaccattgagcagctcgaaaaagctcgaattcgattacagaaagtcgaactagaagcggatgagtattgaatgactggatactctgagatagaacgagaaaaagcaaatttgattaatgccacttctattagtttggaacaattagaaaagtctaaaaacgaaaccctttattttgaaaaacaaagggcgatgaatcagctccgacaacgggttttccaacaagccgtacaaggagctctaggaactctgaatacttgtttgaataCcgagttacatttccgtacgatttgtgctaatattagcattctcggggccatggaatggaagagttaaattaattaggccttgaacttctactttcctttagaatttaggcattatttttccctttgcttccgaaaaaaaatagtaaagaaacactaatggcaacccttcgagtcgacgaaattcataaaattctccgcgaacgtattgaacaatataatagaaaagtagggattgagaatatcgttacgcctttcgtgcgggtcggaacttacccgacaaggaatttcgctaccttaggaccgTtataattacggccgccgttcaccagggcttcggtcgccggcttccctgtcatcagttcaccaacttccttgaccttccggcactgggcaggcgtcagcccccatacatggtcttacgactttgcggagacctgtgtttttggtaaacaatcgcccgggcctggtcactgcgacccccttttgcgaggggacaccccttctctcgaagttacggggctattttgccgagttccttaaagagagttgtctcgcgcccctaggtattctctacctacccacctgtgtcggtttcgggtacaggtacccctttgttgaaggtcgttcgagcttttcctgggagtatggcatgggttacatacttcagcgccgtagcgcctggtatgagcctcgtggagaagcaatggctagtccacggggctcatacttcagcgctgcagtgcttggtactcggacctcggctcgaggcattttttctaccccttcttaccctgaaaaagcagggtcaccttgtgtccttaaacctataaccatctttcggctaacctagcctcctccgtCcctccgtaccaacaaggggtagtacaggaatattgacctgttgtccatcgactacgcctttcggcctgatcttaggccctgactcaccctccgtggacgaaccttgtggaggaaaccttgggttttcagggcattggattctcaccaatgttttcgttactcaagccgacattctcgcttccgcttcgtcgacccccgctttcgcggttgcttccctctaaggcggaacgctcccctaccgatgcattttgacatcccacagcttcggcagatcgcttagccccgttcatcttcagcgcaagggcgctcgatcagtgagctattacgcactctttaaagggtggctgcttctaggcaaacctcctggttgtactaaaaaatagtaaagaaacactaatggcaacccttctattaagaagaccccctggctgcgaagcttacccaggggatgttttttatttgcattcacgccttttagaaagagccactaaattaaattctcttttaggggaaggaagtatgactgctttaccaatagttgagactcaatctggagacgtttccgcctatattcctactaatgtaatctccattacagatggacaaatattcttatccgtagatctattcaatgccggaattcggcctgctattaatgtgggtatttccgttcctagagtaggatccgcggctcaaattaaagccatgaaaCaagtagctggcaaatcaaaattggaattagctcaatttgcagagttacaagcctttgcacaattcgcctctgctctcgataaaacaagtcagaatcaattggcaaggggcCGAcgaCGATTACGAGAATTGCTTAAACAATCCCAAGCAAGTCAGATAGCTACTATTTATATTGGAACAAGAGGATATCTTGATTCCTTAGAAATTGGACAGGTAAAGAAATTTCTGGATGAGTTACGTAAACACCTAAAAGATACTAAACCTCAATTCCAAGAAATTATATCTTCTAGCAAGACATTCACCGAGGAAGCGGAAATCCTTTTGAAGGAAGCTATTCAGGAACAACTCGAACGGTTTTCCCTTCAGGAACAAACATAAATTTTGCACGTCTACTCTTGTTAGTAGAAGTAGTAGAGGAGAAATCGTTGAGAAAGATTTTTCATTTGAATCATGCAAAAAAGTTTTCTTAGTTTTTAGTATAGTTATTTAAAGAATAGATAGAAATAAGATTGCGTCCAAATAGGATTTGAACATATACCAAAGGTTTAGAAGACCTCTGTCCTATCCATTAGACAATGGACGCTTTTTTCATATTTTCTTCTTTCTTTTCATTTTTTATCGGACCAA
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| CDS seq | atggcaacccttctattaagaagaccccctggctgcgaagcttacccaggggatgttttttatttgcattcacgccttttagaaagagccactaaattaaattctcttttaggggaaggaagtatgactgctttaccaatagttgagactcaatctggagacgtttccgcctatattcctactaatgtaatctccattacagatggacaaatattcttatccgtagatctattcaatgccggaattcggcctgctattaatgtgggtatttccgttcctagagtaggatccgcggctcaaattaaagccatgaaaCaagtagctggcaaatcaaaattggaattagctcaatttgcagagttacaagcctttgcacaattcgcctctgctctcgataaaacaagtcagaatcaattggcaaggggcCGAcgaCGATTACGAGAATTGCTTAAACAATCCCAAGCAAGTCAGATAGCTACTATTTATATTGGAACAAGAGGATATCTTGATTCCTTAGAAATTGGACAGGTAAAGAAATTTCTGGATGAGTTACGTAAACACCTAAAAGATACTAAACCTCAATTCCAAGAAATTATATCTTCTAGCAAGACATTCACCGAGGAAGCGGAAATCCTTTTGAAGGAAGCTATTCAGGAACAACTCGAACGGTTTTCCCTTCAGGAACAA
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| Protein seq | MATLLLRRPPGCEAYPGDVFYLHSRLLERATKLNSLLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSVDLFNAGIRPAINVGISVPRVGSAAQIKAMKQVAGKSKLELAQFAELQAFAQFASALDKTSQNQLARGRRRLRELLKQSQASQIATIYIGTRGYLDSLEIGQVKKFLDELRKHLKDTKPQFQEIISSSKTFTEEAEILLKEAIQEQLERFSLQEQ |
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| Function | ATP synthase subunit alpha, chloroplastic [UniProtKB/Swiss-Prot:P0C2Z6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0030301 | OsLima_03g0030301.01 | Chr03 | 30290597 | 30291323 | + | IsoSeq | ||
| CDS seq | atgccgaatcgacgacctatgtataaaaaaaggagaaagtttttggatttgaagaaaaaagtaggaattctatccattttcaTtttccatttttct |
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| Protein seq | MPNRRPMYKKRRKFLDLKKKVGILSIFIFHFS |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0030301 | OsLima_03g0030301.02 | Chr03 | 30290601 | 30291056 | + | IsoSeq | ||
| CDS seq | atgcagaaatcatatgaaagaaccatagcatttcgcgacctattggtaaatcaaatcaactttgattct |
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| Protein seq | MQKSYERTIAFRDLLVNQINFDS |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0030301 | OsLima_03g0030301.03 | Chr03 | 30290601 | 30291394 | + | IsoSeq | ||
| CDS seq | atgccgaatcgacgacctatgtataaaaaaaggagaaagtttttggatttgaagaaaaaagtaggaattctatccattttcaTtttccatttttct |
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| Protein seq | MPNRRPMYKKRRKFLDLKKKVGILSIFIFHFS |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0030301 | OsLima_03g0030301.04 | Chr03 | 30290601 | 30291602 | + | IsoSeq | ||
| CDS seq | atgccgaatcgacgacctatgtataaaaaaaggagaaagtttttggatttgaagaaaaaagtaggaattctatccattttcaTtttccatttttct |
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| Protein seq | MPNRRPMYKKRRKFLDLKKKVGILSIFIFHFS |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0030301 | OsLima_03g0030301.05 | Chr03 | 30290601 | 30291905 | + | IsoSeq | ||
| CDS seq | atgccgaatcgacgacctatgtataaaaaaaggagaaagtttttggatttgaagaaaaaagtaggaattctatccattttcaTtttccatttttct |
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| Protein seq | MPNRRPMYKKRRKFLDLKKKVGILSIFIFHFS |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0030301 | OsLima_03g0030301.06 | Chr03 | 30290603 | 30291150 | + | IsoSeq | ||
| CDS seq | atgccgaatcgacgacctatgtataaaaaaaggagaaagtttttggatttgaagaaaaaagtaggaattctatccattttcaTtttccatttttct |
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| Protein seq | MPNRRPMYKKRRKFLDLKKKVGILSIFIFHFS |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0030301 | OsLima_03g0030301.07 | Chr03 | 30290822 | 30293972 | + | IsoSeq | ||
| CDS seq | atggcaacccttctattaagaagaccccctggctgcgaagcttacccaggggatgttttttatttgcattcacgccttttagaaagagccactaaattaaattctcttttaggggaaggaagtatgactgctttaccaatagttgagactcaatctggagacgtttccgcctatattcctactaatgtaatctccattacagatggacaaatattcttatccgtagatctattcaatgccggaattcggcctgctattaatgtgggtatttccgttcctagagtaggatccgcggctcaaattaaagccatgaaaCaagtagctggcaaatcaaaattggaattagctcaatttgcagagttacaagcctttgcacaattcgcctctgctctcgataaaacaagtcagaatcaattggcaaggggcCGAcgaCGATTACGAGAATTGCTTAAACAATCCCAAGCAAGTCAGATAGCTACTATTTATATTGGAACAAGAGGATATCTTGATTCCTTAGAAATTGGACAGGTAAAGAAATTTCTGGATGAGTTACGTAAACACCTAAAAGATACTAAACCTCAATTCCAAGAAATTATATCTTCTAGCAAGACATTCACCGAGGAAGCGGAAATCCTTTTGAAGGAAGCTATTCAGGAACAACTCGAACGGTTTTCCCTTCAGGAACAA
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| Protein seq | MATLLLRRPPGCEAYPGDVFYLHSRLLERATKLNSLLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSVDLFNAGIRPAINVGISVPRVGSAAQIKAMKQVAGKSKLELAQFAELQAFAQFASALDKTSQNQLARGRRRLRELLKQSQASQIATIYIGTRGYLDSLEIGQVKKFLDELRKHLKDTKPQFQEIISSSKTFTEEAEILLKEAIQEQLERFSLQEQ
More
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 17.131563 | 0.884266 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g48471 | RBH | 4.383280 | 4.464649 | 0.465718 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0009090 | RBH | 400.428223 | 85.896706 | 644.869629 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0030410 | SBH | 21.131731 | 4.016240 | 21.247755 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0030470 | RBH | 5.962484 | 0.000000 | 12.362711 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0030580 | RBH | 98.227249 | 4.531226 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0030260 | RBH | 11.925137 | 6.506388 | 12.422420 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0300300 | SBH | 4539.07959 | 422.9936675 | 612.403595 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0029970 | RBH | 159.341278 | 7.673171 | 86.401794 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0030310 | RBH | 5627.881348 | 21.796021 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0030380 | RBH | 5.428410 | 6.108679 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0002700 | RBH | 87415.539062 | 608.788208 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0030150 | RBH | 21.889034 | 0.080598 | 8.077003 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0030120 | RBH | 0.000000 | 1.614789 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G017790 | SBH | 286.852173 | 78.991211 | 447.335388 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0004650 | SBH | 2354.627930 | 984.945374 | 3754.520264 |
