Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0029350 | OGI:11004300 | 13/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:29388882-29393379 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggaccccatagctacatatttgttggaaattaaactagcgggggatcgaaaaaatgctagggtggaatatgattggtttatattcagtaaggtggtagactcaaatgtattgtgctacaaagactttgttgatgacattgcaaagtcatatccatgggggccaaatgagactgttacaattgactacatggatttggttgataaaacctctcatcatgtcaaaactgatcaggacatgatagcaatgtttgaaaagttcattgatatcaaggtgattccaatgattattcgtatacatggtattgatgaaaatattgatgagttagaccacactcttgataaagtaaacatagacgtgttcgatactccttctttggcaattccctctcaagtggatttcagccaacctagcagcagcactcaaccttctcgtgtcactgtgccatccaacacatacttagtaaacctttttccaatggctgagcatgttggtgtggatgatgagggcatgtacttaaatgatgttgaggaagctgctgctggtcatgctgaggaaactagaggtaaagaggttgtcaatgaaGactccgaggatgaatcttattttgcatctaaggatgcatctgaggatgaaactgaggatgcatctgaggatgagtgtgtggatgaatctgaggatgaggggatggcattggatgagatgccagaatatcttcctaccataacctatgataaaaatgatccaccaatgataaaaggcagcacttatcctaacattgatgaatttagattggcaatagcacaacatgcaatAAaaaaggaattttaatataacattatcgagagtgaaccagggaaatttactgcaagttgtgctgctgaaggctgcaaatggaggattcatgcatctgcggttgctgatggtgtcaccatcatggtaggtttctattgtacatcaacATatattCtttaaatattgcaaaatatgtGttttattgtggtattgattatctatgacattttaggtaaaaactaatcttgttgcccatggatgctcaagtactagaagaagtgaaaatatcaaggctgcaagcaagttttggatttgtgagaaggtgaaagattggttgttggaggatgctactgttggagcaaaggaattgtaaagaaggattcatgagacacacaaggttttgatcaattacaaaagagtgtttgttggtAGagagcttgctcttacaaagttgtatgggagctggaatgaaaattttgacatgttgtatagatacgaggcacaaattgaattatcaagccctggtagctttttcatcattgaccatcacaaggttctagaagaaataaggttcaggaggttattctttgccttaaaaccatgcattgatggtttcctgtaaaatcaaaggtgtttttgattattattttgtgatgaacaattgagcattggagattattggttttgttatttggaatttattcatgaagtggttttggagatgattggaatttacaggtgaatataaaggatgctgttatttcatgtgaccagtcAaaccgggctgtgtatgccggtcagaccggcggtgatcgagcggtcggaccggccagcccgcggtctgaccggccgacgctgtgtcggtttcagtttcgggttgtttgtttggatatccgtgattatttcatgattatggcttctagatgggtactaaacgtatgtaatactgttgtttgctactatgagtcaagttggagatagcttggtctaggaatatggtttctttgtttatttcatgtgtaggtgacttgatgcctcGggagagtatttgcggtgatggactgggagtcggcttggggataagacgacgtccgtggtggtcagagatcatgcgggatacttaggctagagttgatgcacgtggttgatggagattccatatggcatacgatggaggtattgtgtgcgtatgggatgtggagtcgaatttggaaggagtccaaatttggtacgattggttatgtaaagtttctttcttgtactagagggttttctaaggtgttttaggactcttagtatgagtttggttcgtggctttaggctgcctacctcatgtataaatagagggggagcgtgaggcttcccgatatcgctttagagagcaattgagttgagTtttgagttagggttttgagtttagtcgaaatttttgtaaggagagctcttggtgcactttgtaaacacagagagaatcaagaaagatgtcatctactttaaaagttcttcgatttgtgtttaccgggtttcggcggtctaaccggcgatctaccggcggtcagatcggcggcaagcggcggttagaccggcggcatatGggcggtccgactagcggtagcgacaggcgactacagtggtcagaccagagattcaacaccggtcagaccGgcggcatccacacggtcagaccggcagatcaatctcggtcagaccgacttccgtcgatttcgagggtaacttttatttccgctaaaagttttcggtttttgggtataccaaccattcacccccccctctggttggcttagttcttgtgattcgatcctacattttcttggtggttgcaggccatatttggctatagacagtactttcttaataggcaaatttaagggacagctagcagttgtttgtgctatagatggccataattggatgcacccagttgcttgtggtatatttgactcagagaccaatgaaaactggatatagttcatgcagcaacttagagatgcaattggcactccaacaggcttggctatttgcaCcgatgcaggaaagggggtagataatgcagtgaatgaggtaatttatgccttgtacgttttgttatttcttttgaaaaatagctaacaagcattactatttttctcctttgttttaggtcttctcttctgcagaacatagggagtgcatgAaacacttggtcactaacttcaagaagaagttttctggcaaggtttttgatgacaacctttggccagtagcatatgcatggagcgcttctttGAgaagcacattgcagccatgcaaaaagctaaaccggaagcgatgtcatacctgaagaagtatcacaaaaggctatggagcaggagtcagttctccacagtttgtaaggttgactatgtcacaaatAatcttgcaaagagcttcaataatatggtcaaagactggaagggactccatttatatgacttcctagagaagattcggcggtggatgatggtcaaatGggacaagaggcgaagaatatgtatgaagtttgaaggtcgcattctacctcatattgtgaaggaactgaatgaaaaaagcagagatttggacatggtggtcactaggaatggtgattttgaggcggaagtagaagtgaaagggggtagtgggttcagacatgttgtcaatttggagcacaaaacctgcacatgtagggaatttcaagtctcaggaaaaccttgtctccatgctatagcatttatattatatcaattagaggaaggcttgaagattatgtggatatctgctttagtgtgtatcaattcaggacagcatatgataaatttgtgccttcattgcctgacaagtctcaatggccaaagctaatcatgggttcttcttggcaccacccattttgaagagatcagctgggaggccaaaaactatgaggtacaaagaatgcactgagAaagtaagcaaaagaagtgggaggcacaagtgcccaatttgcaagacctatggccatcattggaacaattgcaaagagggtgatccggagcaactagcggcaatgcttgctgaaaggtaactacacgtcttacaaatttccattatgtttcttataaccttaagacatatattttctccttttcatagagggccgccaaagaagagaaggaagaaaactaatAaacctccctcagagactagcatcatagttgctccaacatttacaccgataatgacatatccccctaggttagccaatatccttctttatcttattctaatctgaatttagatcagcctttgtacataacaattaattcttcacatctaacccatttattccagtgaggacaatatgacaaggaacaatagcttggattcaagtaaatcagttaggtaagtacttgtgccaattgttagtattattttgctttatccaatccatttgcatttacaattatgtttttataggtctaactcacttactggctccaaccaacctgagccttccaacatgattatagcactgccaccccttggagagcaaacaccaccacctgcaccaacaaaagccaagcgcaagacgaaaggaaaaccaccatctgatgctgctcctgacagcccagctatgggcacaaggagcaaaaagaagagccctgcaatgagcactagaagcaaaaaaaaaaaaaagcttatggactaa
More
|
||||||||||
| CDS seq | atggaccccatagctacatatttgttggaaattaaactagcgggggatcgaaaaaatgctagggtggaatatgattggtttatattcagtaaggtggtagactcaaatgtattgtgctacaaagactttgttgatgacattgcaaagtcatatccatgggggccaaatgagactgttacaattgactacatggatttggttgataaaacctctcatcatgtcaaaactgatcaggacatgatagcaatgtttgaaaagttcattgatatcaaggtgattccaatgattattcgtatacatggtattgatgaaaatattgatgagttagaccacactcttgataaagtaaacatagacgtgttcgatactccttctttggcaattccctctcaagtggatttcagccaacctagcagcagcactcaaccttctcgtgtcactgtgccatccaacacatacttagtaaacctttttccaatggctgagcatgttggtgtggatgatgagggcatgtacttaaatgatgttgaggaagctgctgctggtcatgctgaggaaactagaggtaaagaggttgtcaatgaaGactccgaggatgaatcttattttgcatctaaggatgcatctgaggatgaaactgaggatgcatctgaggatgatgaggacaatatgacaaggaacaatagcttggattcaagtaaatcagttaggtctaactcacttactggctccaaccaacctgagccttccaacatgattatagcactgccaccccttggagagcaaacaccaccacctgcaccaacaaaagccaagcgcaagacgaaaggaaaaccaccatctgatgctgctcctgacagcccagctatgggcacaaggagcaaaaagaagagccctgcaatgagcactagaagcaaaaaaaaaaaaaagcttatggactaa
More
|
||||||||||
| Protein seq | MDPIATYLLEIKLAGDRKNARVEYDWFIFSKVVDSNVLCYKDFVDDIAKSYPWGPNETVTIDYMDLVDKTSHHVKTDQDMIAMFEKFIDIKVIPMIIRIHGIDENIDELDHTLDKVNIDVFDTPSLAIPSQVDFSQPSSSTQPSRVTVPSNTYLVNLFPMAEHVGVDDEGMYLNDVEEAAAGHAEETRGKEVVNEDSEDESYFASKDASEDETEDASEDDEDNMTRNNSLDSSKSVRSNSLTGSNQPEPSNMIIALPPLGEQTPPPAPTKAKRKTKGKPPSDAAPDSPAMGTRSKKKSPAMSTRSKKKKKLMD |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0029350 | OsLima_03g0029350.01 | Chr03 | 29388882 | 29393379 | + | NAM | ||
| CDS seq | atggaccccatagctacatatttgttggaaattaaactagcgggggatcgaaaaaatgctagggtggaatatgattggtttatattcagtaaggtggtagactcaaatgtattgtgctacaaagactttgttgatgacattgcaaagtcatatccatgggggccaaatgagactgttacaattgactacatggatttggttgataaaacctctcatcatgtcaaaactgatcaggacatgatagcaatgtttgaaaagttcattgatatcaaggtgattccaatgattattcgtatacatggtattgatgaaaatattgatgagttagaccacactcttgataaagtaaacatagacgtgttcgatactccttctttggcaattccctctcaagtggatttcagccaacctagcagcagcactcaaccttctcgtgtcactgtgccatccaacacatacttagtaaacctttttccaatggctgagcatgttggtgtggatgatgagggcatgtacttaaatgatgttgaggaagctgctgctggtcatgctgaggaaactagaggtaaagaggttgtcaatgaaGactccgaggatgaatcttattttgcatctaaggatgcatctgaggatgaaactgaggatgcatctgaggatgatgaggacaatatgacaaggaacaatagcttggattcaagtaaatcagttaggtctaactcacttactggctccaaccaacctgagccttccaacatgattatagcactgccaccccttggagagcaaacaccaccacctgcaccaacaaaagccaagcgcaagacgaaaggaaaaccaccatctgatgctgctcctgacagcccagctatgggcacaaggagcaaaaagaagagccctgcaatgagcactagaagcaaaaaaaaaaaaaagcttatggactaa
More
|
|||||||
| Protein seq | MDPIATYLLEIKLAGDRKNARVEYDWFIFSKVVDSNVLCYKDFVDDIAKSYPWGPNETVTIDYMDLVDKTSHHVKTDQDMIAMFEKFIDIKVIPMIIRIHGIDENIDELDHTLDKVNIDVFDTPSLAIPSQVDFSQPSSSTQPSRVTVPSNTYLVNLFPMAEHVGVDDEGMYLNDVEEAAAGHAEETRGKEVVNEDSEDESYFASKDASEDETEDASEDDEDNMTRNNSLDSSKSVRSNSLTGSNQPEPSNMIIALPPLGEQTPPPAPTKAKRKTKGKPPSDAAPDSPAMGTRSKKKSPAMSTRSKKKKKLMD
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g62810 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0041860 | SBH | 0.585706 | 0.000000 | 3.028708 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0041560 | SBH | 0.285678 | 0.566002 | 2.298139 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0041610 | SBH | 0.808504 | 2.188025 | 6.750972 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0041850 | SBH | 0.111848 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0041390 | SBH | 2.516846 | 7.096284 | 11.371699 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0607500 | SBH | 0 | 0.101224 | 0.0136925 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0041280 | RBH | 0.096751 | 0.222642 | 0.619384 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0609300 | SBH | 6.152223 | 19.395855 | 17.158287 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0012750 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0029420 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0041300 | SBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0029180 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0029130 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G029120 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0029090 | RBH | 0.191860 | 0.0 | 0.931876 |
