Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0026270 | OGI:03067950 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:26103169-26106085 | ||||||||
| Gene Symbol | OsSTA105 | ||||||||||
| DNA seq | atggtaagcctgcaactaagatcactctcatttcttcgcatgttcttcatggtggattggttggattttgcaagttgttagtttaaagctgctttggcgaaatcgattatgttcaattggtatcattttaactaaacatagtgaaatgagagctatcacaggagcaaaatttcagtagctAAaaaccttgagtttcatcatagcagtttatcatgtaaagatgaagtatcAaagtactcgtaagtcctaagctgaagttgatcaatatatcatgttctctaaataacaatgtcctgttttgtcattatggacttttcattaatattaaatgcgatctttttcatcatatttcctttcctccactattgtaggaaactagcatttgctattcacaccattatgttccttttttttttctacagaccataccaaacaagttcttggaccattttggtgggacgttgtcaagaaccattgaactagtatcccccaagggtattgtgtatattgtcaaagtcaccgagcacatgaataagacAatcctacagtgcggatgggaggcatttgtagatgcccatcacatagaagagaatgactccttattgttccgtcacattgagaattcccgctttgaggttctgatccttgattctgatggttgtgagaaagtctttacctgtgctggcataaaaaagacttctagtgttcaagaaagAaatgcagctccagttgatatttcaaggagcactcatgatgaaaccacacaatcatcagggagtaaaaaaattgttagatgccaaagggctagtgacagtcagcgtggaaaaactgcaaaattggcagaaacatcttcgtctggggaatcaggtttaaaattgacgattctcttcttcatgaacctttttgaaccatgcatcagctaaacattttcattttagatttgcagtactctgaaaaatagatttctctatatttgccttattgaatattgtgaaatgcacaggagaggagggcactgacagcagtacttctgaagatgagtcatcctatgagctagatgatcctcagatgcctccaggacgtaattatgtcttatcgcgttggactagtctatctgaagcacaggaagaaaaagtagatatgcttgtccaggacattcaacctgaaattcctgtatttgtggctatcatgaagcatagcaatgttaactcacgtcgtgcttgtcttgtaagtacttccttttagtcaagtagatagttcaaatcctgcatgtgctaacttttggggtttatgaatgcaccctttattccatgcaacttacacagtataattgttcttttctagatataatgatagtaatacgacagagtgagttactttgaaattaatagaaatggtaaggttaccttgctatcatttgagagcctagattagaaatgcttgtaatcaatagaaaacgatgaggatgcatcagataaggttattcaagttccatttggagataactccatttttcaataaaCagcatgaattgtgcatggtgtatggttagttgtacaatatgcagcctttttctttcagtagagaaggctgttaaatttgctgtggtctatagacctttgcacaatgcaaaatttattttctcttttctctattttacatcacaaaaatacatttacagcatcatattctgtctggatcaggtaattcctaagcgctatgcatctgcacacttcccacttgaaagtcaaaccatcacacttcagcggcaaggcaagaacaagaagtGgtatcccatgttttacattaggaaagatggatctggatacatgctttatgggtgttggaaaaaatttgttcgtgacaaccatgtgaaggagggagacatgtgcatctttcacctaacaaagtttactgggggggaattcggagcaacagtccatctactccgtgaaacaaaatctggttccttaggttcattccatactagtcataaaaggtttgacttaagggatggcagaacgtggccgaaagtgactggtgttagaagagtaagttctaggccttacctgacagcagacagagtttctctgactgaagaacaggtcaggaaagtggaagaagttgttcactccattcaatctgaaggtcccatgtatgtgtcaataatgaacaagagcaatgttggtaccgatgggctctacatcattgtaagtcttgctatttcctggacacacttccattactatttagcatttattattactactactacttgtcaataggctgtagtGGTATAGTTTGTTTTCTTGAATTAGACAATATGTCTGGATCTAGTAAGTAATCAGTATCACCACAGCACTTAATCGCACTGTATCTTGAACATTCACATCCAAACAAGCCTTGGCAATTGGAACTGCAATTTTTCATAACCCTTGGTGTAATTTAAGTTGTTCATGTTTGCGGATACACTGGCTAACCTATTGCTGTACTGAACACTGTACTGTATCCGAAAACAGATCTTTGGCAGGCAATTCGCGACAAGGTACCTCCCGGAAGGGGAGCAAACTTTGACGCTTCTGATGACGGGGAAGAGCGCATGGCAGGTCAAGATGCGCCCTCGGAGCGGCGATGCGAAGATGATCACCACAGGCTGGCGCCATTTTGTCCATGACAACCATCTGCAAATTGAAGACATCTGCCTCTTCCAGCTGATGAATGATGAGAGTAAGCTTACCATGACAGTCCATATCATTCGTCGCAACGAGAAGAGCTAGTTTCCCTCTGGTGGCACTTCCATGAGAAGCGTTGGCTTTTATTCTAGTACTTTATTTATGTAAGCTTTTGCTGGAGTAGTGGATTTGAATTCTGAAAATTGTGGTTATGCAATACTAATTATTAAGAGTTAGCTACTTTT
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| CDS seq | atggaaactagcatttgctattcacaccattatgttccttttttttttctacagaccataccaaacaagttcttggaccattttggtgggacgttgtcaagaaccattgaactagtatcccccaagggtattgtgtatattgtcaaagtcaccgagcacatgaataagacAatcctacagtgcggatgggaggcatttgtagatgcccatcacatagaagagaatgactccttattgttccgtcacattgagaattcccgctttgaggttctgatccttgattctgatggttgtgagaaagtctttacctgtgctggcataaaaaagacttctagtgttcaagaaagAaatgcagctccagttgatatttcaaggagcactcatgatgaaaccacacaatcatcagggagtaaaaaaattgttagatgccaaagggctagtgacagtcagcgtggaaaaactgcaaaattggcagaaacatcttcgtctggggaatcaggagaggagggcactgacagcagtacttctgaagatgagtcatcctatgagctagatgatcctcagatgcctccaggacgtaattatgtcttatcgcgttggactagtctatctgaagcacaggaagaaaaagtagatatgcttgtccaggacattcaacctgaaattcctgtatttgtggctatcatgaagcatagcaatgttaactcacgtcgtgcttgtcttgtaattcctaagcgctatgcatctgcacacttcccacttgaaagtcaaaccatcacacttcagcggcaaggcaagaacaagaagtGgtatcccatgttttacattaggaaagatggatctggatacatgctttatgggtgttggaaaaaatttgttcgtgacaaccatgtgaaggagggagacatgtgcatctttcacctaacaaagtttactgggggggaattcggagcaacagtccatctactccgtgaaacaaaatctggttccttaggttcattccatactagtcataaaaggtttgacttaagggatggcagaacgtggccgaaagtgactggtgttagaagagtaagttctaggccttacctgacagcagacagagtttctctgactgaagaacaggtcaggaaagtggaagaagttgttcactccattcaatctgaaggtcccatgtatgtgtcaataatgaacaagagcaatgttggtaccgatgggctctacatcattATCTTTGGCAGGCAATTCGCGACAAGGTACCTCCCGGAAGGGGAGCAAACTTTGACGCTTCTGATGACGGGGAAGAGCGCATGGCAGGTCAAGATGCGCCCTCGGAGCGGCGATGCGAAGATGATCACCACAGGCTGGCGCCATTTTGTCCATGACAACCATCTGCAAATTGAAGACATCTGCCTCTTCCAGCTGATGAATGATGAGAGTAAGCTTACCATGACAGTCCATATCATTCGTCGCAACGAGAAGAGCTAG
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| Protein seq | METSICYSHHYVPFFFLQTIPNKFLDHFGGTLSRTIELVSPKGIVYIVKVTEHMNKTILQCGWEAFVDAHHIEENDSLLFRHIENSRFEVLILDSDGCEKVFTCAGIKKTSSVQERNAAPVDISRSTHDETTQSSGSKKIVRCQRASDSQRGKTAKLAETSSSGESGEEGTDSSTSEDESSYELDDPQMPPGRNYVLSRWTSLSEAQEEKVDMLVQDIQPEIPVFVAIMKHSNVNSRRACLVIPKRYASAHFPLESQTITLQRQGKNKKWYPMFYIRKDGSGYMLYGCWKKFVRDNHVKEGDMCIFHLTKFTGGEFGATVHLLRETKSGSLGSFHTSHKRFDLRDGRTWPKVTGVRRVSSRPYLTADRVSLTEEQVRKVEEVVHSIQSEGPMYVSIMNKSNVGTDGLYIIIFGRQFATRYLPEGEQTLTLLMTGKSAWQVKMRPRSGDAKMITTGWRHFVHDNHLQIEDICLFQLMNDESKLTMTVHIIRRNEKS |
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| Function | B3 domain-containing protein Os03g0620400 [UniProtKB/Swiss-Prot:Q851W5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0026270 | OsLima_03g0026270.01 | Chr03 | 26103169 | 26106085 | + | NAM | ||
| CDS seq | atggaaactagcatttgctattcacaccattatgttccttttttttttctacagaccataccaaacaagttcttggaccattttggtgggacgttgtcaagaaccattgaactagtatcccccaagggtattgtgtatattgtcaaagtcaccgagcacatgaataagacAatcctacagtgcggatgggaggcatttgtagatgcccatcacatagaagagaatgactccttattgttccgtcacattgagaattcccgctttgaggttctgatccttgattctgatggttgtgagaaagtctttacctgtgctggcataaaaaagacttctagtgttcaagaaagAaatgcagctccagttgatatttcaaggagcactcatgatgaaaccacacaatcatcagggagtaaaaaaattgttagatgccaaagggctagtgacagtcagcgtggaaaaactgcaaaattggcagaaacatcttcgtctggggaatcaggagaggagggcactgacagcagtacttctgaagatgagtcatcctatgagctagatgatcctcagatgcctccaggacgtaattatgtcttatcgcgttggactagtctatctgaagcacaggaagaaaaagtagatatgcttgtccaggacattcaacctgaaattcctgtatttgtggctatcatgaagcatagcaatgttaactcacgtcgtgcttgtcttgtaattcctaagcgctatgcatctgcacacttcccacttgaaagtcaaaccatcacacttcagcggcaaggcaagaacaagaagtGgtatcccatgttttacattaggaaagatggatctggatacatgctttatgggtgttggaaaaaatttgttcgtgacaaccatgtgaaggagggagacatgtgcatctttcacctaacaaagtttactgggggggaattcggagcaacagtccatctactccgtgaaacaaaatctggttccttaggttcattccatactagtcataaaaggtttgacttaagggatggcagaacgtggccgaaagtgactggtgttagaagagtaagttctaggccttacctgacagcagacagagtttctctgactgaagaacaggtcaggaaagtggaagaagttgttcactccattcaatctgaaggtcccatgtatgtgtcaataatgaacaagagcaatgttggtaccgatgggctctacatcattATCTTTGGCAGGCAATTCGCGACAAGGTACCTCCCGGAAGGGGAGCAAACTTTGACGCTTCTGATGACGGGGAAGAGCGCATGGCAGGTCAAGATGCGCCCTCGGAGCGGCGATGCGAAGATGATCACCACAGGCTGGCGCCATTTTGTCCATGACAACCATCTGCAAATTGAAGACATCTGCCTCTTCCAGCTGATGAATGATGAGAGTAAGCTTACCATGACAGTCCATATCATTCGTCGCAACGAGAAGAGCTAG
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| Protein seq | METSICYSHHYVPFFFLQTIPNKFLDHFGGTLSRTIELVSPKGIVYIVKVTEHMNKTILQCGWEAFVDAHHIEENDSLLFRHIENSRFEVLILDSDGCEKVFTCAGIKKTSSVQERNAAPVDISRSTHDETTQSSGSKKIVRCQRASDSQRGKTAKLAETSSSGESGEEGTDSSTSEDESSYELDDPQMPPGRNYVLSRWTSLSEAQEEKVDMLVQDIQPEIPVFVAIMKHSNVNSRRACLVIPKRYASAHFPLESQTITLQRQGKNKKWYPMFYIRKDGSGYMLYGCWKKFVRDNHVKEGDMCIFHLTKFTGGEFGATVHLLRETKSGSLGSFHTSHKRFDLRDGRTWPKVTGVRRVSSRPYLTADRVSLTEEQVRKVEEVVHSIQSEGPMYVSIMNKSNVGTDGLYIIIFGRQFATRYLPEGEQTLTLLMTGKSAWQVKMRPRSGDAKMITTGWRHFVHDNHLQIEDICLFQLMNDESKLTMTVHIIRRNEKS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.050887 | 0.074390 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0620400 | RBH | 0.060460 | 0.000000 | 0.613433 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g42280 | RBH | 0.063645 | 0.000000 | 0.155276 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0620400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0026630 | RBH | 0.0 | 1.456725 | 0.957225 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0026360 | RBH | 0.0 | 0.000000 | 0.173804 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0026420 | SBH | 0.142810 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0026450 | RBH | 0.000000 | 0.019506 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0026230 | RBH | 0.0 | 1.155621 | 0.694569 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0414700 | RBH | 0.0573295 | 0.611044 | 0.3566055 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0026010 | RBH | 0.0 | 0.0 | 0.226859 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0419100 | RBH | 0.03226 | 0.436147 | 0.549062 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0026280 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0026290 | RBH | 0.0 | 1.855678 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0026400 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0026140 | RBH | 0.0 | 0.0 | 0.282812 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0026050 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G026100 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0026050 | RBH | 0.0 | 0.0 | 3.395494 |
