Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0024500 | OGI:03061200 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:23769076-23775798 | ||||||||
| Gene Symbol | PLS2, RBP-59, OsPLS2, RLS3 | ||||||||||
| DNA seq | gattagactacgcgggcctggcccatgaaatgcgctttgcttgggcgaatcgcaaggcgattacgccgtggacgagacgagtgagaggaggagagcggccatggcggggcggagtggcggcggcggcggcgggagctccgggaagagcgggacggggaggatggtgtcgctgcaggagttcgtctcgtccatggcgcctctcatagacctggagaaggttccgtactccgatcccctatcgcttttctttcgctgtttggttcggaaggtggaacggatggtggtggtggtgggtggtgacgcgtctgtggtgtggttgcgcaggcggcggagatatcggcggagtcggcgacgagctcgaagaccctcgagaggaggggttgcgtcatggccaacctcaagtgcaccgacgcccaggttgatttgcttccattttgctgcttgcttgcttgcccatcggtgccaatgtgtcatcgaggcgtggtgctaatcttgttctggccttgttggacctgcttggtgcgtagagtagacggggctgatggggaagacgctcctggagttccaacccaacaagggcgacgtgcttccacctcacaaggtgaggttacctttgccctcctgtcgtattgttgttattgctcgctgtgataaaattctggttaggaatttatttgtggtatgtgagaacggtttgtttcagaacaattgtcgcttcaggtattgccgtcgaaactcacacttgcagtatttctgccatttgtttagtaattgtgaacaagtaatgttgttgttaactgatagtttcagtgaaatattagattcgtttgtaaagttcattatgaattgcatcacgtgtattattgattttgttgagattggcaggagttgatacatgaaaagctcatgcatgtttcttaatttaccggacactgattcaaagaaatttgtattttacttcaccattgctaatgcccacttatgtttttcttctctagtttggaacacacgatgtggttgctctgaagccaaataaggcagatgctggatctgctgctcttgggcaaggtgtagtttatcgcttgaaggtacctaactatcatctaagggctgttgactatttaaagtctttgcttctgaattaggagagatgactgtaatttgaacaaacaggattcttccattactgttgcctttgatgacattcctgaagatggattaaatagccctctccgccttgaaaagcttgcaaatgaggtatattttccatgctgttttcattactatttgcaaatgacattccattactgttttcttctctactatattttccatgctctctcttacaactttctgattagaaattttatagcctccaagtaaccataatagtataattgtatcataattcctctttgctttttttttatctccatgtatgtatttctatatatcttcattattgccccttgtcctccagcattgccttacaattcattggaccctaaattttgcatcttaatgctcttctaggtgacataccgcaggatgaaggatgcactagttcaacttagtaagggcattcaaacaggcccttcagcaaaccttattcctgttttgtttggagaaaacccacctatgagttccaaggatgttgcgaagttcagtccatttaacaagaatttggatgagtcacaggttacaatttgatttaTttttttcaactgcttttttttggcttgttgcataattaTgtttcagttaagttcttatctaaataaggagaagagaagccataagtacttggggcctggagaaatttatcagaacagtatgatctacaatagaattttccagtgcaatcactttgttctgctgatactatttcaagtatcagtagaatttgtatttttaacttattaagtaccagaggaagatctgaaatttattgaatggcagacactcatgattttaagaaaataaaagaacatatggaactaggcaaataacgctaacaccagcacctgcagtttcagactgtggacattccatcacTtttggcattacaacttacaaccaaatgtgtcaacaccgtcatcgattacatataattcttgcacctgctaatactggctttggaagacctcatcctgagtagtagcatatatttgcaatacttctgttaatggtgttgcttttgcttcggtgaactccacagctaattatgctggcactggtgtttggcctccacattttttaTtttctttgctagaaattgattgtttaatAaaaataaaaaaattacaattgatgccttttgtctttaccatgtatatctacttgttatgttcttttttgtatcgccttcaaataccagtttcaatatgtattcaaatgaaataaatttcctttttgtggggcccatatctttgttctgcagaaagatgctatctcgaaggCcctcaggtcaagggatgttttcttgcttcatggacctcctggcactgggaagacaacaactatcattgagataatattgcaggaggtgaaacgtggatcaaagattcttgcttgtgctgcttctaacatcgccgtggataacattgttgagcgactctCccgatataggttgctaacaaaattttgaaatacctttttaactcgaactttctattcccccatctatcttggtaatgttgaccatttacctcattcaaccaataataactgagaaaattctccctatcctgtcaaaataaaagatgtgatattggttaatgtgacatgttgttattgacatttttctagaaccaaattggtgaggttaggccatcctgctcgattactaccccaagtgttggacagtgctcttgacgcacaggtatagcttactctgagtgcttcaccttttctcctctactgaggattattaggataaatattcatgaaggttatgttccataattatttcatcagagttgctttgtctctttcaattttcaactgttatatttattcaaataccttgttaaagtgtacccgcctacgccttatgtgacatctgtaacatctgcatgacattctctttatgcccaagttaaaatgggatagattttcttatgaattacagttccacctgtattatctatgatccattcatgcattcacataacttaactgtacttaatctgcttactatttctaatgaaccaggtattgcgagcagataacagcagcttagcaggagatattcgcaaagaaatgaaggtaatcatttactacataattcttaggttcctattattaaatggcaagaccctgctttacatggcatattattttggcatttcaggaaccatctaattagaagctgtcatgtttagatgatagtaatgaaactgcaatttcaataatgttttccattgtagttaaatgtttcttgaTttgttctcttttcatcttttaggtgcttaatagcaaattgctgaaagctaaggataagaatacaaaaagggacatcaggaaagagctcagaacccttgccaaagaagagagaaaacgacaacagcttgctgttgctgatgtgataaaaaatgcagatgttgtactgtcgactttgactggtgcatcttccaaaaagctagatggtattacatttgatttggtcattattgatgaagctgctcaggcacttgagatggcatgttggatagccttattgaaggttaatactaacttatgactagttttttttttcatgttgctgcacgttttgagaatgatgattgctgtaaacagtcatcaaaggttctcgtattAtttaTGCttttttgagtagcacaataaagatagcatgtactgtttcacaaactcccacctttaactttaagcttaaaatatgtcttaaccaagccagcagttgagcatgatcacacgggttcaattttaaaagtgcatggtataatgagaacgagatgctgcattaggtgtccattttagagcaaaaggaaggagtatgagagaagttgggaaaactaaatgatttccttggaagatagctaaccttaatttcaataggtggttacacgtacttgaattcattctatcaatcttgtatggatgtatgtaaactctaacaagttctcatgacccctgtggggctccttcacactccacaagttggcttctctgattatgccagtgaacaatttcatcacctatttgattgcttgtgtttgtcatgattcagcatgcacagcgcgtcggttaaatggtcatcatactgtacttattgagatctgtcatagggctcctcagttcttttgtttttgtatgcagggtccaagatgtgtgcttgctggagaccatcttcaacttcctccgactatccaaagtgctgaggctgagaagaaggggatgggaaagacactctttgaacgccttactgaagcttatggagatcaaattacatccatgctcactatccagtacagaatgcatgagctcataatgaattggtcatctaaagaactttataataacaaggtgcacttcccattggTgtttttacactagccacctattactaacttgttttcactagccaccTATtagtaacttgttttcagcctctctctttagtccataactttcctcatgttgttatttctttgtttcttgtacttagatcaaagctcataacttttctcatgttgttatttctttgtttcttgtacttagatcaaagctcattctagtgttgctgatcatatgctctatgacattgaagaagtgaaaagatcttcttccacagagccgactatcatactaattgacactactgggttagtattctccaatgcttggcctattcaatgtgttcattcttttagtcatttatgggttgaacttgaaccttggcaattttgcttccctcgttgctttctttccctcactcaatagtgttggcttcctctataaaagagtgtcggcttcctctatatttccctcactcaatagtgttggcttcctctataaaagagtgttggcttcctctataaaagataggactaccgaattcacttcaaagggttatctcatacttgaagacaataattgggcagaagtaatacttcaaatttgtagccatcatttgactgatgaataaaagatatctgTttttttaaaagaaatgatgtgatgaccaacatcaatgtttgttagatacacttctaacagtctcaagtaatcatttaggtgtgacatggaagaagtaaaagatgaggaggagagcactatgaatgagggtgaggctgcagtatccattgctcatgccaagctgcttgttgagagtggtgtccgtgcatctgatattggaataattacaccttatgctgcacaggtttgctcctatatgctctgaatattatcaaatcaatatacagtgatgagcttaataaaacaaaacaaaataaacgtttataggacttatgggttggctccttcatgatgttgaagtttataggactgactcattgaatggtgtaatcccgtaggtaacctgtctgaagatgatgagaaacaaagatactaaactgaaggacttggagatatcgacagttgatgggttccagggtagggagaaagaagccatcatcatttcaatggtcagatccaactcaaagaaagaggtaagCTcccttccatgatcctccttggtgagtggatatcctatgtaaaatattcagctttacaaacatgaatattatacatggatgaggatttgattgctgctgcacagttgatccatcaaattagcatctggggagacttcaacttattttagaaaaatgtttaatagaatagagcgaatcagtatcgatatgatgtgaacgatctgtagatatatgtgcatgccatgcaaaatatctcattattgacataaggacgaaatatcatttttaaaataaaaggactgtctgattgaactactgaaataagaattcacaattatattacctggatactaaggaaaccttatctatttgcaaatttcaggtcggattcttaagtgatcatagacgaatgaatgttgctgtaacacgagccagaaggcagtgctgcctagtgtgcgatgtagagaccgtaagcaacgacaaattcttgaaacgcttggttgagtactttgaggagaacggggagtacttgagtgcatcagaataccagagctgatgacttggggtgttaacccttaaccgtgatagcccgtgcttatcgcaaagatagtgaagagatatatccaaacgatgcttgtgataggaacatcgtgcacttcaaactggtgcaatatggccaatggagatactgtcattcgacttttatagattggaaacagatcgctgtgagactgaacagataattagctcaggagtggatcaatttcgtcttgactggccctgttctggtctcttcttctgtggcttatggaaatgaaacctcagttatgtgtttttatatgtccgttctttcagctgatgtacaatgatagaagactaattttattcatccatgtgcaaatctaccatagttttttgcatggagttttgaaacttgggtccacaaaaatagtaataataggataggaggttgactgtactgaacttcgcatgataattaatctgtatctcatccatcttgcttattttcacaatgtcgcccaaaata
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| CDS seq | atgaaccaggtattgcgagcagataacagcagcttagcaggagatattcgcaaagaaatgaaggtgcttaatagcaaattgctgaaagctaaggataagaatacaaaaagggacatcaggaaagagctcagaacccttgccaaagaagagagaaaacgacaacagcttgctgttgctgatgtgataaaaaatgcagatgttgtactgtcgactttgactggtgcatcttccaaaaagctagatggtattacatttgatttggtcattattgatgaagctgctcaggcacttgagatggcatgttggatagccttattgaagggtccaagatgtgtgcttgctggagaccatcttcaacttcctccgactatccaaagtgctgaggctgagaagaaggggatgggaaagacactctttgaacgccttactgaagcttatggagatcaaattacatccatgctcactatccagtacagaatgcatgagctcataatgaattggtcatctaaagaactttataataacaagatcaaagctcattctagtgttgctgatcatatgctctatgacattgaagaagtgaaaagatcttcttccacagagccgactatcatactaattgacactactgggtgtgacatggaagaagtaaaagatgaggaggagagcactatgaatgagggtgaggctgcagtatccattgctcatgccaagctgcttgttgagagtggtgtccgtgcatctgatattggaataattacaccttatgctgcacaggtaacctgtctgaagatgatgagaaacaaagatactaaactgaaggacttggagatatcgacagttgatgggttccagggtagggagaaagaagccatcatcatttcaatggtcagatccaactcaaagaaagaggtcggattcttaagtgatcatagacgaatgaatgttgctgtaacacgagccagaaggcagtgctgcctagtgtgcgatgtagagaccgtaagcaacgacaaattcttgaaacgcttggttgagtactttgaggagaacggggagtacttgagtgcatcagaataccagagctga
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| Protein seq | MNQVLRADNSSLAGDIRKEMKVLNSKLLKAKDKNTKRDIRKELRTLAKEERKRQQLAVADVIKNADVVLSTLTGASSKKLDGITFDLVIIDEAAQALEMACWIALLKGPRCVLAGDHLQLPPTIQSAEAEKKGMGKTLFERLTEAYGDQITSMLTIQYRMHELIMNWSSKELYNNKIKAHSSVADHMLYDIEEVKRSSSTEPTIILIDTTGCDMEEVKDEEESTMNEGEAAVSIAHAKLLVESGVRASDIGIITPYAAQVTCLKMMRNKDTKLKDLEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDHRRMNVAVTRARRQCCLVCDVETVSNDKFLKRLVEYFEENGEYLSASEYQS |
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| Function | DNA-binding protein SMUBP-2 [UniProtKB/Swiss-Prot:Q60560] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0024500 | OsLima_03g0024500.01 | Chr03 | 23769076 | 23775798 | + | NAM | ||
| CDS seq | atgaaccaggtattgcgagcagataacagcagcttagcaggagatattcgcaaagaaatgaaggtgcttaatagcaaattgctgaaagctaaggataagaatacaaaaagggacatcaggaaagagctcagaacccttgccaaagaagagagaaaacgacaacagcttgctgttgctgatgtgataaaaaatgcagatgttgtactgtcgactttgactggtgcatcttccaaaaagctagatggtattacatttgatttggtcattattgatgaagctgctcaggcacttgagatggcatgttggatagccttattgaagggtccaagatgtgtgcttgctggagaccatcttcaacttcctccgactatccaaagtgctgaggctgagaagaaggggatgggaaagacactctttgaacgccttactgaagcttatggagatcaaattacatccatgctcactatccagtacagaatgcatgagctcataatgaattggtcatctaaagaactttataataacaagatcaaagctcattctagtgttgctgatcatatgctctatgacattgaagaagtgaaaagatcttcttccacagagccgactatcatactaattgacactactgggtgtgacatggaagaagtaaaagatgaggaggagagcactatgaatgagggtgaggctgcagtatccattgctcatgccaagctgcttgttgagagtggtgtccgtgcatctgatattggaataattacaccttatgctgcacaggtaacctgtctgaagatgatgagaaacaaagatactaaactgaaggacttggagatatcgacagttgatgggttccagggtagggagaaagaagccatcatcatttcaatggtcagatccaactcaaagaaagaggtcggattcttaagtgatcatagacgaatgaatgttgctgtaacacgagccagaaggcagtgctgcctagtgtgcgatgtagagaccgtaagcaacgacaaattcttgaaacgcttggttgagtactttgaggagaacggggagtacttgagtgcatcagaataccagagctga
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| Protein seq | MNQVLRADNSSLAGDIRKEMKVLNSKLLKAKDKNTKRDIRKELRTLAKEERKRQQLAVADVIKNADVVLSTLTGASSKKLDGITFDLVIIDEAAQALEMACWIALLKGPRCVLAGDHLQLPPTIQSAEAEKKGMGKTLFERLTEAYGDQITSMLTIQYRMHELIMNWSSKELYNNKIKAHSSVADHMLYDIEEVKRSSSTEPTIILIDTTGCDMEEVKDEEESTMNEGEAAVSIAHAKLLVESGVRASDIGIITPYAAQVTCLKMMRNKDTKLKDLEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDHRRMNVAVTRARRQCCLVCDVETVSNDKFLKRLVEYFEENGEYLSASEYQS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0024500 | OsLima_03g0024500.02 | Chr03 | 23769141 | 23775589 | + | IsoSeq | ||
| CDS seq | ccgtggacgagacgagtgagaggaggagagcggccatggcggggcggagtggcggcggcggcggcgggagctccgggaagagcgggacggggaggatggtgtcgctgcaggagttcgtctcgtccatggcgcctc |
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| Protein seq | PWTRRVRGGERPWRGGVAAAAAGAPGRAGRGGWCRCRSSSRPWRL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.245970 | 0.089568 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0586900 | RBH | 3.383950 | 2.648181 | 4.008512 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g38990 | RBH | 2.245295 | 1.747570 | 1.012431 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0586900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0024830 | RBH | 0.914187 | 2.322480 | 3.583814 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0024620 | RBH | 0.128935 | 2.091213 | 3.684506 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0024680 | RBH | 1.214206 | 8.923656 | 7.799239 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0024730 | RBH | 0.279889 | 0.302118 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0024430 | RBH | 8.687798 | 9.887232 | 10.570633 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0374100 | RBH | 6.5532325 | 13.3689995 | 11.141546 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0024210 | RBH | 0.593546 | 0.921803 | 0.674599 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0376400 | RBH | 7.1320535 | 12.475169 | 13.081639 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0024540 | RBH | 0.997353 | 8.921766 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0024610 | RBH | 9.941255 | 12.640976 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0024380 | RBH | 0.485740 | 0.701118 | 1.159945 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0024270 | RBH | 0.392324 | 1.898803 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G024360 | RBH | 0.307656 | 4.022513 | 1.847464 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0024320 | RBH | 0.944071 | 8.952902 | 5.530948 |
