Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0023530 | OGI:03057500 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:22569917-22572149 | ||||||||
| Gene Symbol | RHS10 | ||||||||||
| DNA seq | atgatcatgccgagctccctaactacagccggcacgtctcagagcccgcctgacgccaccaccgccggcgcaccaccacctccggctccatcggtgggagcatggggcggcaacgtgccgagcgggttgctcatcggtgtcgccttcgccggtttcctcctggcgttggcgtccatgttcttgttcttgtgcatcaagaaccggtggaagaggaggcggcggccggcacaggtgatgaacctggcgcgcaggagaaccctcgtcgtgccggagcgtaagtgtagtagtccatctgtccaatgtccatgcatggattgacgtcggctcgtgtcctggcatgacatggcatgagatgcaggtgtggcgtcgccggaagtgtaccagccgtcgaacggtccgacggcgtcgccgagcgggacgagctcgtacgagttctccgggacgacgtcgtggttcacgtacgatgagctggcggcggtgaccggcgggttcgcggaggagaaagtgatcggcgagggcgggttcgggaaggtgtacatgggggcgctgggcgacgggcggcgcgtggcggtgaagcagctcaaggtggggagcgggcagggggagaaggagttccgcgccgaggtggacaccatcagccgcgtccaccaccgccacctcgtcaccctcgtcggctactccgtcaccgagcaccaccacctcctcgtctacgagttcgtctccaacaagacgctcgaccatcacctgcacggaggaggcctccccgtcatggattggCccaagcggatgaagattgccatcggatcagcccgtggtttgacctacctgcacgaagactgtacgccacaccttttttctttctttcTtttttaaacaaacgcaattacacttaatttggtcttcagcttaaTtttctgcattcctttaaccgttcaatcgactctattgtatttgcaggccatcctaggatcatacatagggacatcaagtcggccaacatcctcctggatgacgccttcgaagcaaaggtgcgaACacaacttgttcctcctcagcattccacacagaatgacaaactgacgacgattgaatttcttgccgatcggtgaccAAaaaaaaaaaaaaacaggtcgcggatttcggtcttgccaaattcaccaacgattcggtgactcatgtctcgacgcgcgtgatgggcacattcgggtaattaagcacttcgtacgtccgtacgtcctaatgcagatcatcatatatatcatggtttaattcgatcgatcgaaatttctatgtaggatgcatggctttcGTATgttgttacatgacacggattgtatatttgtatgtaaccttggtcgttgttgcacaggtacctggcgccggagtacgcatcaagcgggaagctgacggacagatcggacgtgttttcgttcggggtggtgctgttggagctcatcaccgggcggaagcccgtggactcgtctcagcccctcggagaagagagcttagttgaatgggtaattaagtatatatgcatgcgatgattctcaagttaattacagacgccgacgcgaaagcttttgtcagtctgtcttgttacatggtcacatggctggtgatctgtgtccggtggatgcaggctcggcctctcctggtggacgctttggagacggacgacttcagggagctcgctgaccccgcgctggagcgccgctactccaagtcggagatgcggaggatggtggaggccgcggccgcttgcattcggtactccgtcaccaagagaccaaggatggtgcaggtaattaaactgaaatcatccctcaagggccgtatctatcgtttctgacatgttattttaaataatcattcaaagatttcaagatgtattagatgtatcactccgacgaacatacaagtcaacttctattagttataacaaaaatgatttgataaatataattgctaatgtatatatgtatctgtctgtcaatgcaaatagtgtattataaaaaactatatattggatatataggtgtggcgatcgctggacgtggaggggagctcgccggacctgaccaacggagtgaagcttgggcagagcatggcgtacgactccaaccagtactcggcggacatcgagctcttccggcggatggcgTttgccaacgacctctccaccgctgagctcggctactccggcaaggacgacgtacgccgtccgccacgctag
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| CDS seq | atgatcatgccgagctccctaactacagccggcacgtctcagagcccgcctgacgccaccaccgccggcgcaccaccacctccggctccatcggtgggagcatggggcggcaacgtgccgagcgggttgctcatcggtgtcgccttcgccggtttcctcctggcgttggcgtccatgttcttgttcttgtgcatcaagaaccggtggaagaggaggcggcggccggcacaggtgatgaacctggcgcgcaggagaaccctcgtcgtgccggagcgtgtggcgtcgccggaagtgtaccagccgtcgaacggtccgacggcgtcgccgagcgggacgagctcgtacgagttctccgggacgacgtcgtggttcacgtacgatgagctggcggcggtgaccggcgggttcgcggaggagaaagtgatcggcgagggcgggttcgggaaggtgtacatgggggcgctgggcgacgggcggcgcgtggcggtgaagcagctcaaggtggggagcgggcagggggagaaggagttccgcgccgaggtggacaccatcagccgcgtccaccaccgccacctcgtcaccctcgtcggctactccgtcaccgagcaccaccacctcctcgtctacgagttcgtctccaacaagacgctcgaccatcacctgcacggaggaggcctccccgtcatggattggCccaagcggatgaagattgccatcggatcagcccgtggtttgacctacctgcacgaagactgccatcctaggatcatacatagggacatcaagtcggccaacatcctcctggatgacgccttcgaagcaaaggtcgcggatttcggtcttgccaaattcaccaacgattcggtgactcatgtctcgacgcgcgtgatgggcacattcgggtacctggcgccggagtacgcatcaagcgggaagctgacggacagatcggacgtgttttcgttcggggtggtgctgttggagctcatcaccgggcggaagcccgtggactcgtctcagcccctcggagaagagagcttagttgaatgggctcggcctctcctggtggacgctttggagacggacgacttcagggagctcgctgaccccgcgctggagcgccgctactccaagtcggagatgcggaggatggggagctcgccggacctgaccaacggagtgaagcttgggcagagcatggcgtacgactccaaccagtactcggcggacatcgagctcttccggcggatggcgTttgccaacgacctctccaccgctgagctcggctactccggcaaggacgacgtacgccgtccgccacgctag
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| Protein seq | MIMPSSLTTAGTSQSPPDATTAGAPPPPAPSVGAWGGNVPSGLLIGVAFAGFLLALASMFLFLCIKNRWKRRRRPAQVMNLARRRTLVVPERVASPEVYQPSNGPTASPSGTSSYEFSGTTSWFTYDELAAVTGGFAEEKVIGEGGFGKVYMGALGDGRRVAVKQLKVGSGQGEKEFRAEVDTISRVHHRHLVTLVGYSVTEHHHLLVYEFVSNKTLDHHLHGGGLPVMDWPKRMKIAIGSARGLTYLHEDCHPRIIHRDIKSANILLDDAFEAKVADFGLAKFTNDSVTHVSTRVMGTFGYLAPEYASSGKLTDRSDVFSFGVVLLELITGRKPVDSSQPLGEESLVEWARPLLVDALETDDFRELADPALERRYSKSEMRRMGSSPDLTNGVKLGQSMAYDSNQYSADIELFRRMAFANDLSTAELGYSGKDDVRRPPR |
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| Function | Proline-rich receptor-like protein kinase PERK12 [UniProtKB/Swiss-Prot:Q9ZUE0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0023530 | OsLima_03g0023530.01 | Chr03 | 22569917 | 22572149 | + | NAM | ||
| CDS seq | atgatcatgccgagctccctaactacagccggcacgtctcagagcccgcctgacgccaccaccgccggcgcaccaccacctccggctccatcggtgggagcatggggcggcaacgtgccgagcgggttgctcatcggtgtcgccttcgccggtttcctcctggcgttggcgtccatgttcttgttcttgtgcatcaagaaccggtggaagaggaggcggcggccggcacaggtgatgaacctggcgcgcaggagaaccctcgtcgtgccggagcgtgtggcgtcgccggaagtgtaccagccgtcgaacggtccgacggcgtcgccgagcgggacgagctcgtacgagttctccgggacgacgtcgtggttcacgtacgatgagctggcggcggtgaccggcgggttcgcggaggagaaagtgatcggcgagggcgggttcgggaaggtgtacatgggggcgctgggcgacgggcggcgcgtggcggtgaagcagctcaaggtggggagcgggcagggggagaaggagttccgcgccgaggtggacaccatcagccgcgtccaccaccgccacctcgtcaccctcgtcggctactccgtcaccgagcaccaccacctcctcgtctacgagttcgtctccaacaagacgctcgaccatcacctgcacggaggaggcctccccgtcatggattggCccaagcggatgaagattgccatcggatcagcccgtggtttgacctacctgcacgaagactgccatcctaggatcatacatagggacatcaagtcggccaacatcctcctggatgacgccttcgaagcaaaggtcgcggatttcggtcttgccaaattcaccaacgattcggtgactcatgtctcgacgcgcgtgatgggcacattcgggtacctggcgccggagtacgcatcaagcgggaagctgacggacagatcggacgtgttttcgttcggggtggtgctgttggagctcatcaccgggcggaagcccgtggactcgtctcagcccctcggagaagagagcttagttgaatgggctcggcctctcctggtggacgctttggagacggacgacttcagggagctcgctgaccccgcgctggagcgccgctactccaagtcggagatgcggaggatggggagctcgccggacctgaccaacggagtgaagcttgggcagagcatggcgtacgactccaaccagtactcggcggacatcgagctcttccggcggatggcgTttgccaacgacctctccaccgctgagctcggctactccggcaaggacgacgtacgccgtccgccacgctag
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| Protein seq | MIMPSSLTTAGTSQSPPDATTAGAPPPPAPSVGAWGGNVPSGLLIGVAFAGFLLALASMFLFLCIKNRWKRRRRPAQVMNLARRRTLVVPERVASPEVYQPSNGPTASPSGTSSYEFSGTTSWFTYDELAAVTGGFAEEKVIGEGGFGKVYMGALGDGRRVAVKQLKVGSGQGEKEFRAEVDTISRVHHRHLVTLVGYSVTEHHHLLVYEFVSNKTLDHHLHGGGLPVMDWPKRMKIAIGSARGLTYLHEDCHPRIIHRDIKSANILLDDAFEAKVADFGLAKFTNDSVTHVSTRVMGTFGYLAPEYASSGKLTDRSDVFSFGVVLLELITGRKPVDSSQPLGEESLVEWARPLLVDALETDDFRELADPALERRYSKSEMRRMGSSPDLTNGVKLGQSMAYDSNQYSADIELFRRMAFANDLSTAELGYSGKDDVRRPPR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0568800 | RBH | 0.0 | 0.0 | 4.817469 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g37120 | RBH | 0.0 | 0.0 | 1.229140 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0568800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0023770 | RBH | 0.0 | 0.0 | 2.487561 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0023600 | RBH | 0.0 | 0.0 | 6.501963 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0023640 | RBH | 0.0 | 0.0 | 10.326212 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0023670 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0023480 | RBH | 0.0 | 0.0 | 7.716392 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0351400 | RBH | 0.007087 | 0 | 0.005121 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0023260 | RBH | 0.0 | 0.0 | 4.534900 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0353300 | RBH | 0.027673 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0023560 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0023660 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0023460 | RBH | 0.0 | 0.0 | 1.104021 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0023340 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G023370 | RBH | 0.0 | 0.0 | 1.227280 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0023320 | RBH | 0.0 | 0.0 | 10.225832 |
