Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0023200 | OGI:03056010 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:22021551-22022634 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgacgagcatcgcttggcagcgttgcgtcgtctacggactcaggcggctcggcgacgtccccggcaactccgacgagatggtttacgacgtagctggagctagtgatgccttgcgggcaccgagtagtggcactccggccggcgttctcctcgagcaaccagccgatgagttcgaagaagatggtaacgtcgacgagagcgagcggacgtcagtgatgtcgcgaagaggaggctgcgaccgggaaggtgacaacgtccagcgtctcggcgacatcacaaggcgtcgtgggatagaggttgcggccagcgaggcaaggacgtcgtggcagcaggtagatgtgtcaccggcgaccgacatctccgatgagagggagtgacgcgatctccggccggcggtgcgtccgacaggcggagaggacgctatatccgacggaccgagcagcaccagaaactcgcctcgtcgccgtgttgtgcatgcatgacgatctgaacagaaagagcaggaaaacaaatgaaaactaataagctgtacccatggcaatggctgggtacgtgctccggcgaccgtcttctcctccgcgcgcctcctcgccggacgccgaggcactgcggccaacgtcaccgaccgccgagcgcccgtgttctcgctggacgccgagattctccggccaaaatggtgtgtgtgtctctctctgtcactttcgtatgcgtgtgtGttcagtctgtgtgtgttcctccgtctctgtgtgttcctccgtgtgtgaaatggcatggccttttatagtgaagaaaggcggttccagccagtacgtgcatggctcgatcagtgcatgcgtgatcagccaattgcctaatttagcgattagcatctctttccatatgttgtgtgattcttccaattaacagagatcattattcagcatgattccatccgtgttacgccgaccgatctcctttccaagttggaatgatacagggggatcattttcctcgtattctcgtatatacgcgcaatctgtacatggtgaggcatcgataagaaatcaactgctggcaaatgatttgattattattgccctctaa
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| CDS seq | atgacgagcatcgcttggcagcgttgcgtcgtctacggactcaggcggctcggcgacgtccccggcaactccgacgagatggtttacgacgtagctggagctagtgatgccttgcgggcaccgagtagtggcactccggccggcgttctcctcgagcaaccagccgatgagttcgaagaagatggtaacgtcgacgagagcgagcggacgtcagtgatgtcgcgaagaggaggctgcgaccgggaaggtgacaacgtccagcgtctcggcgacatcacaaggcgtcgtgggatagaggttgcggccagcgaggcaaggacgtcgtggcagcaggtagatgtgtcaccggcgaccgacatctccgatgagagggacatgattccatccgtgttacgccgaccgatctcctttccaagttggaatgatacagggggatcattttcctcgtattctcgtatatacgcgcaatctgtacatggtgaggcatcgataagaaatcaactgctggcaaatgatttgattattattgccctctaa
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| Protein seq | MTSIAWQRCVVYGLRRLGDVPGNSDEMVYDVAGASDALRAPSSGTPAGVLLEQPADEFEEDGNVDESERTSVMSRRGGCDREGDNVQRLGDITRRRGIEVAASEARTSWQQVDVSPATDISDERDMIPSVLRRPISFPSWNDTGGSFSSYSRIYAQSVHGEASIRNQLLANDLIIIAL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0023200 | OsLima_03g0023200.01 | Chr03 | 22021551 | 22022634 | + | NAM | ||
| CDS seq | atgacgagcatcgcttggcagcgttgcgtcgtctacggactcaggcggctcggcgacgtccccggcaactccgacgagatggtttacgacgtagctggagctagtgatgccttgcgggcaccgagtagtggcactccggccggcgttctcctcgagcaaccagccgatgagttcgaagaagatggtaacgtcgacgagagcgagcggacgtcagtgatgtcgcgaagaggaggctgcgaccgggaaggtgacaacgtccagcgtctcggcgacatcacaaggcgtcgtgggatagaggttgcggccagcgaggcaaggacgtcgtggcagcaggtagatgtgtcaccggcgaccgacatctccgatgagagggacatgattccatccgtgttacgccgaccgatctcctttccaagttggaatgatacagggggatcattttcctcgtattctcgtatatacgcgcaatctgtacatggtgaggcatcgataagaaatcaactgctggcaaatgatttgattattattgccctctaa
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| Protein seq | MTSIAWQRCVVYGLRRLGDVPGNSDEMVYDVAGASDALRAPSSGTPAGVLLEQPADEFEEDGNVDESERTSVMSRRGGCDREGDNVQRLGDITRRRGIEVAASEARTSWQQVDVSPATDISDERDMIPSVLRRPISFPSWNDTGGSFSSYSRIYAQSVHGEASIRNQLLANDLIIIAL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g36260 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0023450 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0023300 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0023330 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0023370 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0023160 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0234900 | SBH | 0 | 0 | 0.13641 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0022930 | RBH | 0.0 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0232600 | SBH | 0 | 0 | 0.5516125 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0008160 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0023250 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0023300 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0023140 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0023000 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G023020 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0022980 | RBH | 0.0 | 0.0 | 0.0 |
