Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0022590 | OGI:03049410 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:19607176-19608039 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggagctcagcaatccattctgccacaccatggcaatcctgctcgccgtcctccttgttgcggcggcagcaacaaccgaggcggacggcgccctctgcgacaagtccgacaaggcggctctccttgctgtcaagtcggccctcggcaacccgccggcgctctccgtctggaactcctccacaccgtgctgctcgtgggatggcgtctcctgcgacgccatcaccggccgcgtcaccgagctcacggtcttcgcgctcaacatctcggcgcccgtaccggccgccatcgccaacctgaccaagctgcagattctcaacctcgcctacaaccagctgtacggccccatcccgtcgttcctcggcccgcgcgcgctccccgacctcaccttcctccgcctcgacggcaaccgcctcagcggcgccatcccgcccaccgccaccgtcttcaacctcctcctcgagggcaacctcctcaccggcacgctcccgtccacgttcggcgccgccgccttcggggaggtgggcgtcgccggcaaccagctgagcggcgacgcgtcgatgttgtttggcgccaagaagaagctgaacgcgctgcggctgtcccgcaaccggttcgcgttcgacctcggcagcgtggagctgcccgaggggctggacatcctggtcatcgaccacaacatggtgtacgggagcatcccgccggcggcggcggcggcggggaggaagtggctggcgttcgacgtcagctacaaccagctgtgcgggcccataccgcaggggcggtacacgcaccggttcggggccaagcacttcgccgggaacaagtgcctctgcgaccgcccgctgccgccgtgcagcagctag
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| CDS seq | atggagctcagcaatccattctgccacaccatggcaatcctgctcgccgtcctccttgttgcggcggcagcaacaaccgaggcggacggcgccctctgcgacaagtccgacaaggcggctctccttgctgtcaagtcggccctcggcaacccgccggcgctctccgtctggaactcctccacaccgtgctgctcgtgggatggcgtctcctgcgacgccatcaccggccgcgtcaccgagctcacggtcttcgcgctcaacatctcggcgcccgtaccggccgccatcgccaacctgaccaagctgcagattctcaacctcgcctacaaccagctgtacggccccatcccgtcgttcctcggcccgcgcgcgctccccgacctcaccttcctccgcctcgacggcaaccgcctcagcggcgccatcccgcccaccgccaccgtcttcaacctcctcctcgagggcaacctcctcaccggcacgctcccgtccacgttcggcgccgccgccttcggggaggtgggcgtcgccggcaaccagctgagcggcgacgcgtcgatgttgtttggcgccaagaagaagctgaacgcgctgcggctgtcccgcaaccggttcgcgttcgacctcggcagcgtggagctgcccgaggggctggacatcctggtcatcgaccacaacatggtgtacgggagcatcccgccggcggcggcggcggcggggaggaagtggctggcgttcgacgtcagctacaaccagctgtgcgggcccataccgcaggggcggtacacgcaccggttcggggccaagcacttcgccgggaacaagtgcctctgcgaccgcccgctgccgccgtgcagcagctag
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| Protein seq | MELSNPFCHTMAILLAVLLVAAAATTEADGALCDKSDKAALLAVKSALGNPPALSVWNSSTPCCSWDGVSCDAITGRVTELTVFALNISAPVPAAIANLTKLQILNLAYNQLYGPIPSFLGPRALPDLTFLRLDGNRLSGAIPPTATVFNLLLEGNLLTGTLPSTFGAAAFGEVGVAGNQLSGDASMLFGAKKKLNALRLSRNRFAFDLGSVELPEGLDILVIDHNMVYGSIPPAAAAAGRKWLAFDVSYNQLCGPIPQGRYTHRFGAKHFAGNKCLCDRPLPPCSS |
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| Function | Polygalacturonase inhibitor [UniProtKB/Swiss-Prot:Q05091] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0022590 | OsLima_03g0022590.01 | Chr03 | 19607176 | 19608039 | + | NAM | ||
| CDS seq | atggagctcagcaatccattctgccacaccatggcaatcctgctcgccgtcctccttgttgcggcggcagcaacaaccgaggcggacggcgccctctgcgacaagtccgacaaggcggctctccttgctgtcaagtcggccctcggcaacccgccggcgctctccgtctggaactcctccacaccgtgctgctcgtgggatggcgtctcctgcgacgccatcaccggccgcgtcaccgagctcacggtcttcgcgctcaacatctcggcgcccgtaccggccgccatcgccaacctgaccaagctgcagattctcaacctcgcctacaaccagctgtacggccccatcccgtcgttcctcggcccgcgcgcgctccccgacctcaccttcctccgcctcgacggcaaccgcctcagcggcgccatcccgcccaccgccaccgtcttcaacctcctcctcgagggcaacctcctcaccggcacgctcccgtccacgttcggcgccgccgccttcggggaggtgggcgtcgccggcaaccagctgagcggcgacgcgtcgatgttgtttggcgccaagaagaagctgaacgcgctgcggctgtcccgcaaccggttcgcgttcgacctcggcagcgtggagctgcccgaggggctggacatcctggtcatcgaccacaacatggtgtacgggagcatcccgccggcggcggcggcggcggggaggaagtggctggcgttcgacgtcagctacaaccagctgtgcgggcccataccgcaggggcggtacacgcaccggttcggggccaagcacttcgccgggaacaagtgcctctgcgaccgcccgctgccgccgtgcagcagctag
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| Protein seq | MELSNPFCHTMAILLAVLLVAAAATTEADGALCDKSDKAALLAVKSALGNPPALSVWNSSTPCCSWDGVSCDAITGRVTELTVFALNISAPVPAAIANLTKLQILNLAYNQLYGPIPSFLGPRALPDLTFLRLDGNRLSGAIPPTATVFNLLLEGNLLTGTLPSTFGAAAFGEVGVAGNQLSGDASMLFGAKKKLNALRLSRNRFAFDLGSVELPEGLDILVIDHNMVYGSIPPAAAAAGRKWLAFDVSYNQLCGPIPQGRYTHRFGAKHFAGNKCLCDRPLPPCSS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0436600 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g32180 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0436600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0022830 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0022690 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0022760 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0022730 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0022540 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0303800 | RBH | 0.0370065 | 0.204449 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0022290 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0307300 | RBH | 0.0595255 | 0.161709 | 0.0474415 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0022570 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0022700 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0022520 | RBH | 0.0 | 0.0 | 0.231155 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0022370 | RBH | 0.121719 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G022360 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0022270 | RBH | 0.0 | 0.0 | 0.0 |
